The Journal of General and Applied Microbiology 2009: Index & Table of Contents

2009·1.8 MB·English

KEY WORDS INDEX
(Vol. 55)
A binary fission 267 elastase
biodegradation 261 empty oil palm fruit bunches
a novel CTX-M enzyme
biofilm 69, 359 endophyte
acetic acid bacteria
biosorption 27 Enterobacter
Acidimicrobiu:
bleaching 283 Enterococcus faecalis
Acidomonas
Enterococcus faecium
acidophilin
enzyme characterization
Acinetobacter
cadmium 27 enzyme purification
acne
cAMP 499 essential oil
AcrAB
cAMP-dependent protein kinase 499 esterases
acriflavine
Candida morkotiae sp. nov. estuarine sediment
AcrR Candida wancherniae sp. nov. estuary
Actinobacteria
chitin evolution
Actinomadura sp.
chitinase extended-spectrum B-lactamase 207
activated sludge
Chitiniphilus shinanonensis gen. extreme environments 447
AFLP
nov., Sp. Nov. extremely thermophilic bacterium 323
aging
chitinolytic bacterium
agrobacteria F
chlorine
Agrobacterium Chlorobiaceae
ferric uptake regulator 351
alkalophilic cholesterol oxidase fingerprinting 9
Alphaproteobacteria
Citrobacter braakii forest fire 329
amino acid transporter cloning forest soil 1
ammonia oxidizing bacteria 329, 373
Comamonadaceae comb. nov. fruit fly 479
amoA gene 373
compatible solute
Amphibacillus 155 compost G
Andean lake microbiology 447 conidiation
anoxygenic phototrophic bacteria 163 GABA 305
continuous culture
antimicrobial activity 395 Gammaproteobacteria 301
copper
antimicrobial resistance 191 cpn60 gene GC-content 403
antimicrobial susceptibility 207 gene cloning 241
Cryptococcus
appressorium formation 489 genomic library 317
cyanobacteria
aquaculture ponds and 16S rRNA Geobacillus 81, 87
gene based phylogeny 163 Gluconobacter kanchanaburiensis
archaea 403 dairy products Sp. Nov.
artificial sea water 201 decolorization glucose-1-phosphatase
Aspergillus fumigatus 381 Deltaproteobacteria glutamate decarboxylase
Aspergillus nidulans 381 denitrification GPI
Aspergillus oryzae 381 desiccation tolerance green house soil
Autophagy 409 Desulfovibrio green sulfur bacteria
Avt6 409 Desulfovibrio portus sp. nov. growth on methanol
azo dye 51 DGGE H
Azospirillum palatum sp. nov. dibutyl phthalate
dipicolinic acid halotolerant
dissimilatory sulfite reductase gene heterotrophic bacteria
bacillus 125 histone deacetylase
Bacillus licheniformis DNA-DNA relatedness 469 histone deacetylase inhibitor
bacteria DNase activity 291 Hyalopus
bacterial communities DNase test 291 hydrophobicity
bacterial diversity domain swapping 351 hydrospheres
bacterial spores Hypsizygus marmoreus
E
bacterial symbionts
bacteriochlorophyll c E. coli 305
Bactrocera tau edible mushroom 9 identification 181
Betaproteobacteria Edwardsiella tarda 57, 351 llumatobacter fluminis gen. nov., sp.
506
nov. oO 16S rRNA gene sequence 147
immune protection 16S-23S rDNA ITS 469
immunogen Oceanobacillus soja gen. nov., sp. 16S-23S rRNA gene ITS sequence
indigo nov. 225 111, 247
infant orthogonal array 171 Saccharomyces cerevisiae 409, 427
Inflammation Ser/Thr protein kinase
intrageneric diversity serogroup
Pantoea Shewanella oneidensis
K
phototrophic bacteria site-directed mutagenesis
Kitasatospora atroaurantiaca comb. Phycisphaera mikurensis soil
nov. 19 phylogenetic tree soil bacteria
Kitasatospora kazusanensis sp. nov. phylogenic relationship solid state fermentation
19 phylogeny solvents
Kitasatospora saccharophila sp. nov. Pichia pastoris soy sauce
PLA-degrading actinomycetes spore
Klebsiella Planctomycetes Sporosarcina luteola gen. nov., sp.
plant pathogen nov.
polyphasic taxonomic Staphylococcus
laccase post-translational regulation Streptococcus thermophilus
lactic acid bacteria 181, 277, 395 probiotic Streptomyces lavendulae NCIM
Lactobacillus acidophilus 277 proline uptake 2499
Leifsonia lichenia sp. nov. 339 proline-specific permease stress conditions
lyophilized cells Propionibacterium stress tolerance
Prosthecochloris substrate specificity
y-proteobacterium sulfate-reducing bacteria
Magnaporthe oryzae Pseudomonas stutzeri SVM
marine alga puf gene T
marine bacteria purple bacteria
Mcyl dehydrogenase activity purple nonsulfurbacteria tannase
methyl viologen PUT4 tannic acid
microbial community taxonomic discrimination
microcystin biosynthesis gene taxonomy
Microcystis rDNA sequencing terrestrial cyanobacterium
molecular characterization Reactive Black 5 Thermaerobacter composti sp. nov.
multiplex PCR recombinant human defensin 5
mutagenesis resistance to salts thermal inactivation
mxaF gene response to salts thermophilic bacteria
mycocinotyping response surface methodology Thymus quinquecostatus
Myxococcus xanthus restriction analysis trichostatin A
restriction fragment length polymor- tRNA gene
N
phism (RFLP) tropical rainforest
NADH oxidase Rhizobium two novel anamorphic yeasts
Neisseriaceae Rhodoferax ferrireducens
U
new class Rhodopseudomonas
nitrate Rhodovastum atsumiense UV-B resistance
nitrate removal river
nitrite RPS
novel yeasts from Thailand Ss vaccine
nucleotide sequence vacuole
16S rDNA sequence analysis 181 Vibrio cholerae
16S rRNA 359, 479 virulence
16S rRNA gene 1, 75, 125, 233, 373 virulence gene
VOLUME 55
THE JOURNAL OF GENERAL
AND
APPLIED MICROBIOLOGY
EXECUTIVE EDITORS:
KOJI YODA (Chief) HIDEHARU ANAZAWA KATSUHIKO KITAMOTO
YASUJI KOYAMA SHINICHI MATSUYAMA KENICHI NISHIYAMA
AKINORI OHTA KAN TANAKA YOSHINORI WATANABE
AKIRA YOKOTA
EDITORIAL BOARD MEMBERS:
ROY H. DO! NOBUYUKI FUJITA KENSUKE FURUKAWA
AKIRA HIRAISHI YASUO IGARASHI! YOICHI KAMAGATA
YOKO KATAYAMA FUJIO KAWAMURA HIROSHI KOBAYASHI
KAZUHIRO KOGURE HISAYUKI MITSUI KAORU NAKASONE
HIDEAKI NOUJIRI HISAYOSHI NOZAK!I MASAYUKI OHMORI
HIROYUKI OSADA KEISHI SENOO MAKOTO SHIRAI
ADVISORY BOARD MEMBERS:
KO AIDA BUNJI MARUO HIUGA SAITO TOMOMICHI YANAGITA
Volume 55
February 2009-December 2009
PUBLISHED by
THE MICROBIOLOGY RESEARCH FOUNDATION

THE JOURNAL OF GENERAL AND
APPLIED MICROBIOLOGY
VOLUME 55 2009
CONTENTS
VOLUME 55 FEBRUARY 2009 NUMBER 1
Full Papers
Azospirillum palatum sp. nov., isolated from forest soil in Zhejiang province, China
by Y. Zhou, W. Wei, X. Wang, L. Xu, and R. Lai
Development of AFLP markers and phylogenetic analysis in Hypsizygus marmoreus
by L. Wang, X. Hu, Z. Feng, and Y. Pan
Kitasatospora saccharophila sp. nov. and Kitasatospora kazusanensis sp. nov.,
isolated from soil and transfer of Streptomyces atroaurantiacus to
the genus Kitasatospora as Kitasatospora atroaurantiaca comb. nov.
by B. Li, K. Furihata, T. Kudo, and A. Yokota
Biosorptive capacity of Cd(Il) and Cu(II) by lyophilized cells of Pseudomonas stutzeri
by S.H.A. Hassan, S.-J. Kim, A.-Y. Jung, J. H. Joo, S. E. Oh, and J.E. Yang
Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability ofA . vitis and
A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of
a simple salt requirement test in the pathogenic Agrobacterium species
by K. Tanaka, H.H. Arafat, H. Urbanczyk, S. Yamamoto, K. Moriguchi,
H. Sawada, and K. Suzuki
Rhodovastum atsumiense gen. nov., sp. nov., a phototrophic alphaproteobacterium isolated
from paddy soil
by K. Okamura, T. Hisada, T. Kanbe, and A. Hiraishi
Short Communications
Isolation and characterization of Shewanella oneidensis WL-7 capable of decolorizing azo dye
Reactive Black 5
by J. Wu, K.-S. Kim, N.-C. Sung, C.-H. Kim, and Y.-C. Lee
Immunoprotective analysis of two Edwardsiella tarda antigens
by J.-H. Hou, W.-W. Zhang, and L. Sun
Chemical composition and biological activities of Jeju Thymus quinquecostatus essential
oils against Propionibacterium species inducing acne
by T.-H. Oh, S.-S. Kim, W.-J. Yoon, J.-Y. Kim, E.-J. Yang, N.H. Lee, and C.-G. Hyun
Diversity of heterotrophic bacteria isolated from biofilm samples and cell surface
hydrophobicity
by K. Furuhata, Y. Kato, K. Goto, M. Hara, and M. Fukuyama
Nitrate removal mediated by soil microorganism, Enterobacter sp. GG0461
by S.-T. Kim, T.-G. Choi, H.-S. Wang, and Y.-K. Kim
VOLUME 55 APRIL 2009 NUMBER 2
Full Papers
Cultivation characteristics of denitrification by thermophilic Geobacillus sp. strain TDNO1
by M. Mishima, K. Iwata, K. Nara, T. Matsui, T. Shigeno, and T. Omori
Functional analysis of the thermophilic denitrifying bacterium Geobacillus sp.
strain TDNO1 in continuous culture
by K. Nara, K. Iwata, T. Matsui, T. Shigeno, and T. Omori
Candida wancherniae sp. nov. and Candida morakotiae sp. nov., two novel ascomycetous
anamorphic yeast species found in Thailand
by T. Nakase, S. Jindamorakot, S. Ninomiya, Y. Imanishi, and H. Kawasaki
MxaF gene, a gene encoding alpha subunit of methanol dehydrogenase in and
false growth of acetic acid bacteria on methanol
by R. Suzuki, P. Lisdiyanti, K. Komagata, and T. Uchimura
Genetic analysis of the microcystin biosynthesis gene cluster in Microcystis strains from
four bodies of eutrophic water in Japan
by T. Noguchi, A. Shinohara, A. Nishizawa, M. Asayama, T. Nakano,
M. Hasegawa, K. Harada, T. Nishizawa, and M. Shirai
Desulfovibrio portus sp. nov., a novel sulfate-reducing bacterium in the class
Deltaproteobacteria isolated from an estuarine sediment
by D. Suzuki, A. Ueki, A. Amaishi, and K. Ueki
Water-stress induced trehalose accumulation and control of trehalase in
the cyanobacterium Nostoc punctiforme \|AM M-15
by T. Yoshida and T. Sakamoto
Chitiniphilus shinanonensis gen. nov., sp. nov., a novel chitin-degrading bacterium
belonging to Betaproteobacteria
by K. Sato, Y. Kato, G. Taguchi, M. Nogawa, A. Yokota, and M. Shimosaka
Taxonomical and physiological comparisons of the three species of the genus Amphibacillus
by T. Arai, S. Yanahashi, J. Sato, T. Sato, M. Ishikawa, Y. Koizumi, S. Kawasaki,
Y. Niimura, and J. Nakagawa
Prosthecochloris indica sp. nov., a novel green sulfur bacterium from a marine
aquaculture pond, Kakinada, India
by PA. Kumar, T. N. R. Srinivas, C. Sasikala, C. V. Ramana, J. Suling, and J. Imhoff
VOLUME 55 JUNE 2009 NUMBER 3
Full Papers
Medium optimization by orthogonal array and response surface methodology for
cholesterol oxidase production by Streptomyces lavendulae NCIM 2499
by A.K. Chauhan, S.A. Survase, J. Kishenkumar, and U. S. Annapure
Rapid identification of lactic acid bacteria isolated from home-made fermented milk in Tibet
by J. Yu, Z. Sun, W. Liu, J. Zhang, T. Sun, Q. Bao, and H. Zhang
Identification and characterization of the AcrR/AcrAB system of a pathogenic
Edwardsiella tarda strain
by J.-H. Hou, Y.-H. Hu, M. Zhang, and L. Sun
llumatobacter fluminis gen. nov., sp. Nov., a novel actinobacterium isolated from
the sediment of an estuary
by A. Matsumoto, H. Kasai, Y. Matsuo, S. Omura, Y. Shizuria,n d Y. Takahashi
Phenotypic and molecular characterization of a novel B-lactamase carried by Klebsiella
pneumoniae, CTX-M-72, derived from CTX-M-3
by J. Cheng, Q. Wang, Y. Chen,Y . Ye, H. Li, X. Li, and J.-B. Li
Sporosarcina luteola sp. nov. isolated from soy sauce production equipment in Japan
by T. Tominaga, S.-Y. An, H. Oyaizu, and A. Yokota
Oceanobacillus soja sp. nov. isolated from soy sauce production equipment in Japan
by T. Tominaga, S.-Y. An, H. Oyaizu, and A. Yokota
Short Communications
Bacterial diversity associated with empty oil palm fruit bunch compost as revealed by
cultivation-independent analyses of PCR-amplified 16S rRNA genes
by PW.Y. Liew, B.C. Jong, C.M. Goh, and M. Ahmad
Cloning and molecular characterization of chitinase from Bacillus licheniformis MS-3
by S.A. Mostafa, M.S. Mahmoud, Z.K. Mohamed, and M.R. Enan
Gluconobacter kanchanaburiensis sp. nov., a brown pigment-producing acetic acid
bacterium for Thai isolates in the Alphaproteobacteria
by T. Malimas, P. Yukphan, T. Lundaa, Y. Muramatsu, M. Takahashi,
M. Kaneyasu, W. Potacharoen, S. Tanasupawat, Y. Nakagawa, K. Suzuki,
M. Tanticharoen, and Y. Yamada
Extracellular tannase production by endophytic Hya/opus sp.
by S. Mahapatra and D. Banerjee
VOLUME 55 AUGUST 2009 NUMBER 4
Full Papers
Isolation and identification of dibutyl phthalate-degrading bacteria from
hydrospheres in Tokyo
by G. Ogawa, M. Ishida, and N. Urano
Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of
Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov.
in the phylum Planctomycetes
by Y. Fukunaga, M. Kurahashi, Y. Sakiyama, M. Ohuchi,
A. Yokota, and S. Harayama
Impact of stress conditions on the growth of Lactobacillus acidophilus |BB 801 and
production of acidophilin 801
by M. Zamfir and S. Grosu-Tudor
Performance of an alkalophilic and halotolerant laccase from y-proteobacterium JB in
the presence of industrial pollutants
by G. Singh, P Sharma, and N. Capalash
A new, simple, rapid test for detection of DNase activity of microorganisms: DNase Tube test
by D. Gerceker, D. Karasartova, E. Elyurek, S. Barkar, M. Kiyan,
T.M. Ozsan, M.K. Calgin, and F. Sahin
Short Communications
Kinetic evaluation of physiological heterogeneity in bacterial spores during thermal inactivation
by H. Xu, X. He, J. Gou, H.-Y. Lee, and J. Ahn
Albidoferax, a new genus of Comamonadaceae and reclassification of Rhodoferax
ferrireducens (Finneran et al., 2003) as Albidoferax ferrireducens comb. nov.
by C.V. Ramana and C. Sasikala
Cloning and expression of glutamate decarboxylase gene from Streptococcus thermophilus Y2
by Q. Lin, S. Yang, F. LU, Z. Lu, X. Bie, Y. Jiao, and X. Zou
Survey of probiotic enterococci from traditional dairy products and their impact upon
the infant intestinal microbiota
by D. Vassos, E. Bezirtzoglou, C. Voidarou, A. Alexopoulos, and V. Maipa
VOLUME 55 OCTOBER 2009 NUMBER 5
Full Papers
Functional cloning and predictive structural modeling of a novel esterase from
Bacillus subtilis strain, RRL 1789
by K. Peerzada, M.U. Hussain, N. Jan, V. Verma, G.N. Qazi, and K.I. Andrabi
Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from
compost
by S. Yabe, A. Kato, M. Hazaka, and A. Yokota
Community composition of soil bacteria nearly a decade after a fire in a tropical
rainforest in East Kalimantan, Indonesia
by K. lsobe, S. Otsuka, IM. Sudiana, A. Nurkanto, and K. Senoo
Leifsonia lichenia sp. nov., isolated from lichen in Japan
by S.-Y. An, T. Xiao, and A. Yokota
Purification, characterization, and gene cloning of glucose-1-phosphatase from
Citrobacter braakii
by Y.-O. Kim, H.-W. Kim, |.-S. Park, J.-H. Lee, S.-J. Lee, and K.-K. Kim
Domain analysis of the Edwardsiella tarda ferric uptake regulator
by K. Sun, S. Cheng, F. Wang, and L. Sun
Bacterial populations in epilithic biofilms along two oligotrophic rivers in
the Tohoku region in Japan
by H. Honma, R. Asano, M. Obara, K. Otawa, Y. Suyama, and Y. Nakai
Ammonia oxidizing bacteria community in activated sludge monitored by
denaturing gradient gel electrophoresis (DGGE)
by A. Ziembinska, S. Ciesielski, and K. Miksch
Using a new GPI-anchored-protein identification system to mine the protein databases of
Aspergillus fumigatus, Aspergillus nidulans, and Aspergillus oryzae
by W. Cao, J. Maruyama, K. Kitamoto, K. Sumikoshi, T. Terada,
S. Nakamura, and K. Shimizu
Production of bioactive human a-defensin 5 in Pichia pastoris
by K.-H. Hsu, C. Pei, J.-Y. Yeh, C.-H. Shih, Y.-C. Chung, L.-T. Hung, and B.-R. Ou
Short Communication
GC-content of tRNA genes classifies archaea into two groups
by Y. Kawai and Y. Maeda
VOLUME 55 DECEMBER 2009 NUMBER 6
Full Papers
Evidence for Avt6 as a vacuolar exporter of acidic amino acids in
Saccharomyces cerevisiae cells
by T. Chahomchuen, K. Hondo, M. Ohsaki, T. Sekito, and Y.Kakinuma
Molecular characterization of serogrouping and virulence genes of Malaysian
Vibrio cholerae isolated from different sources
by C. S. J. Teh, K.L. Thong, S.T. Ngoi, N. Anmad, G.B. Nair, and T. Ramamurthy
Proline transport and stress tolerance of ammonia-insensitive mutants of the
PUT4-encoded proline-specific permease in yeast
by K. Poole, M.E. Walker, T. Warren, J. Gardner, C. McBryde,
M. de B. Lopes, and V. Jiranek
New filobasidiaceous yeasts found in the phylloplane of a fern
by W.I. Golubev and J.P Sampaio
Isolation of UV-B resistant bacteria from two high altitude Andean lakes (4,400 m) with
saline and non saline conditions
by M.R. Flores, O.F. Ordonez, M.J. Maldonado, and M.E. Farias
A novel poly (L-lactide) degrading actinomycetes isolated from Thai forest soil,
phylogenic relationship and the enzyme characterization
by S. Sukkhum, S. Tokuyama, T. Tamura, and V. Kitpreechavanich
Intrageneric relationships of members of the genus Rhodopseudomonas
by K. Okamura, K. Takata, and A. Hiraishi
Molecular and biochemical characterization of three bacterial symbionts of fruit fly,
Bactrocera tau (Tephritidae: Diptera)
by C.S. Prabhakar, P. Sood, V. Kapoor, S.S. Kanwar, PK. Mehta,
and P.N. Sharma
Inhibition of histone deacetylase causes reduction of appressorium formation in the rice
blast fungus Magnaporthe oryzae
by M. Izawa, O. Takekawa, T. Arie, T. Teraoka, M. Yoshida, M. Kimura,
and T. Kamakura
Short Communication
Interaction between a Ser/Thr protein kinase, SpkA, and a cAMP-dependent protein
kinase regulatory subunit homolog, CbpB, from Myxococcus xanthus
by Y. Kimura, A. Kakemizu, Y. Matsubara, and K. Takegawa
Acknowledgment
Key Words Index for Vol. 55
Contents of Vol. 55