Methods in Molecular Biology 1267 Robert Eferl Emilio Casanova Editors Mouse Models of Cancer Methods and Protocols M M B ETHODS IN OLECULAR IOLOGY Series Editor John M. Walker School of Life and Medical Sciences University of Hertfordshire Hat fi eld, Hertfordshire, AL10 9AB, UK For further volumes: h ttp://www.springer.com/series/7651 Mouse Models of Cancer Methods and Protocols Edited by Robert Eferl Medical University Vienna (MUV), Institute of Cancer Research, Vienna, Austria Emilio Casanova Medical University Vienna (MUV), Center of Physiology and Pharmacology & Ludwig Boltzmann Institute for Cancer Research (LBI-CR), Vienna, Austria Editors Robert E ferl Emilio C asanova Medical University Vienna (MUV) Medical University Vienna (MUV) Institute of Cancer Research Center of Physiology and Pharmacology & Vienna, Austria Ludwig Boltzmann Institute for Cancer Research (LBI-CR) Vienna, Austria ISSN 1064-3745 ISSN 1940-6029 (electronic) ISBN 978-1-4939-2296-3 ISBN 978-1-4939-2297-0 (eBook) DOI 10.1007/978-1-4939-2297-0 Springer New York Heidelberg Dordrecht London Library of Congress Control Number: 2014960034 © Springer Science+Business Media New York 2 015 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifi cally the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfi lms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifi cally for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. Permissions for use may be obtained through RightsLink at the Copyright Clearance Center. Violations are liable to prosecution under the respective Copyright Law. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specifi c statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. While the advice and information in this book are believed to be true and accurate at the date of publication, neither the authors nor the editors nor the publisher can accept any legal responsibility for any errors or omissions that may be made. The publisher makes no warranty, express or implied, with respect to the material contained herein. Printed on acid-free paper Humana Press is a brand of Springer Springer is part of Springer Science+Business Media (www.springer.com) Prefa ce This book is dedicated to geneticists, molecular biologists, biochemists, and medical doc- tors interested in the use of mouse models in cancer research. Their use as cancer models has provided exceptional insight into the biology and genetics of human cancers. Mice have consistent disease manifestations, have good-sized litters of offspring, and are easy to han- dle, even genetically, some features that have brought the attention of cancer researchers for decades. Genome sequencing of mice has revealed the extent of genomic similarity with other mammals including humans. These genomic studies, together with the exquisite refi nement in genetic engineering techniques, have greatly increased the value of mouse models for research on cancer and many other human disorders. Despite their broad use in cancer research, a certain amount of skepticism about their value and relevance for human cancer is present in the scientifi c and clinical community. This is likely due to the differences between mice and humans, but also to the fact that most clinical trials still fail despite the use of mouse models in the preceding discovery research phases. Scientists are aware that mouse models need to be further refi ned, and the chapters in this book offer an updated view to the way this optimization needs to be made. Given the increasing number of models for different cancers, the fi rst chapters in the book discuss the best approaches for the use of mouse models in specifi c tumor types of clinical rele- vance. The second part of the book discusses robust technologies that facilitate in vivo imaging to track both primary and metastatic tumor development from much earlier stages than previously possible. These models are able to more accurately model sporadic human cancers by specifi cally controlling timing and location of mutations, even within single cells, and by improving the characterization of the phenotype induced by these mutations in liv- ing mice. Undoubtedly, these sophisticated mouse models will fuel our understanding of cancer initiation, immune system roles, tumor angiogenesis, invasion, and metastasis, and the relevance of molecular diversity observed among human cancers. Finally, we need to remember that mouse models are just that, models. They are intended to complement, not replace, studies done in humans. However, these models offer u nique opportunities to investigate cancer mechanisms and optimize drugs in pre-, co-, and postclinical trials. This manual is therefore a valuable laboratory resource for all researchers, from the graduate level upwards, who study cancer and new possibilities for its treatment. Madrid, Spain M arcos Malumbres v Contents Preface. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . v Contributors. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . i x PART I BACKGROUND 1 Modeling Cancer Using Genetically Engineered Mice. . . . . . . . . . . . . . . . . . . 3 Patricia Stiedl , Beatrice Grabner , Katalin Zboray , Edith Bogner , and Emilio Casanova 2 Lung Adenocarcinomas: Comparison Between Mice and Men. . . . . . . . . . . . . 1 9 Helmut H. P opper PART II INDIVIDUAL CANCERS 3 Mouse Models of Breast Cancer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 7 Kazuhito S akamoto , J effrey W. Schmidt , and K ay-Uwe Wagner 4 G enetically Engineered Mouse Models to Study Prostate Cancer. . . . . . . . . . . 7 3 Elspeth A. Brzezinska , C olin Nixon , Rachana P atel , and Hing Y . Leung 5 P ractical Use of Advanced Mouse Models for Lung Cancer. . . . . . . . . . . . . . . 9 3 Roghaiyeh S afari and R alph M euwissen 6 G eneration and Analysis of Mouse Intestinal Tumors and Organoids Harboring APC and K-Ras Mutations. . . . . . . . . . . . . . . . . . . 125 Johan H. van Es and Hans C levers 7 Induction of Colorectal Cancer in Mice and Histomorphometric Evaluation of Tumors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 45 Ilija C rncec , Paulina Pathria , J asmin S vinka , and Robert Eferl 8 Mouse Models of Liver Cancer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 65 Jorge Matias C aviglia and R obert F . S chwabe 9 C urrent Methods in Mouse Models of Pancreatic Cancer . . . . . . . . . . . . . . . . 1 85 Pawel K . M azur , Alexander H erner , Florian N eff , and Jens T. Siveke 10 Mouse Models of Nonmelanoma Skin Cancer. . . . . . . . . . . . . . . . . . . . . . . . . 217 Nicole A mberg , Martin Holcmann , E lisabeth Glitzner , Philipp N ovoszel , Gabriel S tulnig , and Maria Sibilia 11 Clinicopathological Characterization of Mouse Models of Melanoma . . . . . . . 2 51 Blake Ferguson , H . P eter S oyer , and G raeme J . Walker 12 Modeling BCR/ABL-Driven Malignancies in the Mouse . . . . . . . . . . . . . . . . 2 63 Christine Schneckenleithner , A ndrea H oelbl-Kovacic , and Veronika S exl 13 Methods to Generate Genetically Engineered Mouse Models of Soft Tissue Sarcoma . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 83 Rebecca D. Dodd , Leonor A ñó , Jordan M . Blum , Zhizhong L i , David Van Mater , and David G . Kirsch vii viii Contents 14 Characterization of Mouse Model-Derived Osteosarcoma (OS) Cells In Vitro and In Vivo. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 297 Özge Uluçkan , Latifa Bakiri , and Erwin F . W agner 15 Genetically Engineered Mouse and Orthotopic Human Tumor Xenograft Models of Retinoblastoma . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 07 Claudia A . B enavente and Michael A . D yer PART III SPECIFIC ASPECTS 16 Tumor Imaging Technologies in Mouse Models . . . . . . . . . . . . . . . . . . . . . . . 3 21 Michael Bouvet and Robert M. H offman 17 T umor Angiogenesis: Methods to Analyze Tumor Vasculature and Vessel Normalization in Mouse Models of Cancer. . . . . . . . . . . . . . . . . . . 349 Federica Maione and Enrico Giraudo 18 T ransplantable Mouse Tumor Models of Breast Cancer Metastasis. . . . . . . . . . 3 67 Rumela Chakrabarti and Y ibin K ang 19 M ethods to Study Primary Tumor Cells and Residual Tumor Cells in Mouse Models of Oncogene Dependence. . . . . . . . . . . . . . . . . . . . . . . . . . 381 Caroline Botta , C edric D arini , Guillaume Darrasse-Jèze , and Katrina P odsypanina 20 Generation of Transgenic Mouse Model Using PTTG as an Oncogene . . . . . . 395 Sham S. Kakar and Cohin K akar 21 Modeling the Study of DNA Damage Responses in Mice . . . . . . . . . . . . . . . . 4 13 Julia S pecks , Maria N ieto-Soler , Andres J . Lopez-Contreras , and Oscar F ernandez-Capetillo 22 Methods to Study Tumor Surveillance Using Tumor Cell Transplantation into Genetically Engineered Mice. . . . . . . . . . . . . . . . . . . . . . 4 39 Eva Bauer , A gnieszka Witalisz , Birgit S trobl , and Dagmar Stoiber Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 57 Contributors NICOLE A MBERG • Department of Medicine I, Institute of Cancer Research, Comprehensive Cancer Center , M edical University of Vienna , Vienna, A ustria LEONOR AÑÓ • Duke University Medical Center , D urham, NC, U SA LATIFA B AKIRI • BBVA Foundation—CNIO Cancer Cell Biology Program , Spanish National Cancer Research Centre (CNIO) , M adrid, Spain EVA B AUER • Ludwig Boltzmann Institute for Cancer Research , V ienna, Austria CLAUDIA A. BENAVENTE • Department of Chemical Biology and Therapeutics, St. Jude Children’s Research Hospital , Memphis, T N , U SA JORDAN M. BLUM • Duke University Medical Center , D urham , N C, U SA EDITH B OGNER • Ludwig Boltzmann Institute for Cancer Research (LBI-CR) , V ienna, Austria CAROLINE BOTTA • Département de Biologie, U niversité de Lyon, Lyon , F rance MICHAEL BOUVET • Department of Surgery, Moores Cancer Center, U niversity of California-San Diego , La Jolla, CA , USA ELSPETH A. B RZEZINSKA • The Beatson Institute for Cancer Research , G lasgow, UK EMILIO C ASANOVA • Ludwig Boltzmann Institute for Cancer Research (LBI-CR) , V ienna, Austria ; C enter of Physiology and Pharmacology, Comprehensive Cancer Center, Institute of Pharmacology, M edical University of Vienna , V ienna, Austria JORGE M ATIAS C AVIGLIA • Department of Medicine, C olumbia University , N ew York , NY, USA RUMELA C HAKRABARTI • Department of Molecular Biology , P rinceton University , P rinceton, NJ , U SA HANS CLEVERS • Hubrecht Institute-KNAW , University Medical Center Utrecht , U trecht, The Netherlands ILIJA CRNCEC • Institute of Cancer Research (ICR) & Comprehensive Cancer Center (CCC), M edical University of Vienna , V ienna, A ustria CEDRIC DARINI • Institut de Recherches Cliniques de Montréal , M ontreal , Q C , Canada GUILLAUME D ARRASSE-JÈZE • Sorbonne Paris Cité, Faculté de Médecine, Université Paris Descartes , P aris , F rance ; U1151 UMRS8253, I nstitut Necker Enfants Malades , P aris , France REBECCA D . DODD • Duke University Medical Center , D urham, NC, U SA MICHAEL A. DYER • Department of Chemical Biology and Therapeutics , S t. Jude Children’s Research Hospital , M emphis , T N , U SA ROBERT EFERL • Institute of Cancer Research (ICR) & Comprehensive Cancer Center (CCC), Medical University of Vienna , V ienna, A ustria JOHAN H. V AN ES • Hubrecht Institute-KNAW , U niversity Medical Center Utrecht , Utrecht , T he Netherlands BLAKE FERGUSON • Queensland Institute of Medical Research , Herston, Queensland, Australia OSCAR FERNANDEZ-CAPETILLO • Genomic Instability Group, S panish National Cancer Research Center (CNIO) , Madrid, Spain ENRICO GIRAUDO • Laboratory of Transgenic Mouse Models, Candiolo Cancer Institute—FPO, IRCCS , C andiolo, Italy ; Department of Science and Drug Technology , University of Torino , Torino, I taly ix