Methanotrophs: Microbiology Fundamentals and Biotechnological Applications PDF
Preview Methanotrophs: Microbiology Fundamentals and Biotechnological Applications
Microbiology Monographs Series Editor: Alexander Steinbüchel Eun Yeol Lee Editor Methanotrophs Microbiology Fundamentals and Biotechnological Applications Microbiology Monographs Volume 32 Serieseditor AlexanderSteinbüchel Münster,Germany Moreinformationaboutthisseriesathttp://www.springer.com/series/7171 Eun Yeol Lee Editor Methanotrophs Microbiology Fundamentals and Biotechnological Applications Editor EunYeolLee DepartmentofChemicalEngineering KyungHeeUniversity Yongin-si,Gyeonggi-do RepublicofKorea ISSN1862-5576 ISSN1862-5584 (electronic) MicrobiologyMonographs ISBN978-3-030-23260-3 ISBN978-3-030-23261-0 (eBook) https://doi.org/10.1007/978-3-030-23261-0 ©SpringerNatureSwitzerlandAG2019 Thisworkissubjecttocopyright.AllrightsarereservedbythePublisher,whetherthewholeorpart of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation,broadcasting,reproductiononmicrofilmsorinanyotherphysicalway,andtransmissionor informationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilar methodologynowknownorhereafterdeveloped. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt fromtherelevantprotectivelawsandregulationsandthereforefreeforgeneraluse. Thepublisher,theauthors,andtheeditorsaresafetoassumethattheadviceandinformationinthisbook arebelievedtobetrueandaccurateatthedateofpublication.Neitherthepublishernortheauthorsorthe editorsgiveawarranty,expressorimplied,withrespecttothematerialcontainedhereinorforanyerrors oromissionsthatmayhavebeenmade.Thepublisherremainsneutralwithregardtojurisdictionalclaims inpublishedmapsandinstitutionalaffiliations. ThisSpringerimprintispublishedbytheregisteredcompanySpringerNatureSwitzerlandAG. Theregisteredcompanyaddressis:Gewerbestrasse11,6330Cham,Switzerland Preface Methanotrophsareaerobicproteobacteriathatcanutilizemethaneassolecarbonand energysource.Inecology,methanotrophshaveanessentialroleintheglobalcarbon cycle by removing methane generated geothermally and by methanogens. Methanotrophs have been employed as the biocatalyst for mitigating methane as greenhousegasandremediatinghalogenatedhydrocarbonsinsoilandunderground water. Recently, methane is considered the next-generation carbon feedstock for industrialbiotechnologybecauseofitshighabundanceandlowprice.Methanotrophs canbeusedasthebiocatalystfortheproductionofchemicals,fuels,andbiomaterials frommethaneunderenvironmentallybenignproductionconditions. Despite the growing importance of basic and applied researches on methanotrophs,therewasnocomprehensivetextbookforseniorundergraduateand postgraduatelevels.Methanotroph:MicrobiologicalFundamentalsandBiotechno- logicalApplications was written in anattempt togive thereaders a systematic and comprehensiveoverviewforbothbasicandappliedaspectsofmethanotrophs.Thus, thisbookcanbeusedasareferenceformicrobiologistsandbiochemistsdealingwith ecology,environmentalfunctioning,andunderstandingofphysiologyandmetabo- lism of methanotrophs as well as the fundamentals and applications of methane monooxygenases. This book is also valuable to biotechnologists and biochemical engineerswhoresearchontheomics-basedunderstandingofmethanemetabolism, metabolic engineering for strain improvement, methanobactin biosynthesis, and environmentalapplicationsofmethanotrophs. Iwouldliketothankthepeoplewhowereinstrumentalinthewritingofthisbook. First of all, I would like to thank the contributors for taking their valuable time in writingthechapters.IappreciateverymuchProfessorAlexanderSteinbüchelofthe Institute of Microbiology at Münster University, the Microbiology Monographs Series Editor, for giving me the opportunity to publish this book. I would like to acknowledgeC1gasrefineryR&DprogramoftheNationalResearchFoundationof Koreaforsupportingtheresearchfundfordevelopmentofmethanotrophicplatform v vi Preface strains for bioconversion of methane and methanol. Lastly, I am grateful to my belovedfamilyandlabmembersfortheirconsiderationandsupportsothatIcould concentrateonwritingbookscomfortably. Yongin-si,Gyeonggi-do,RepublicofKorea EunYeolLee April2019 Contents MethanotrophEcology,EnvironmentalDistributionandFunctioning. . . 1 PaulL.E.Bodelier,GermanPérez,AnneliesJ.Veraart, andSaschaM.B.Krause EnrichmentandIsolationofAerobicandAnaerobicMethanotrophs. . . 39 Sung-KeunRhee,SamuelImisiAwala,andNgoc-LoiNguyen TheBiochemistryofMethaneMonooxygenases. . . . . . . . . . . . . . . . . . . 71 SunneyI.ChanandSeungJaeLee Multi-omicsUnderstandingofMethanotrophs. . . . . . . . . . . . . . . . . . . . 121 YueZhengandLudmilaChistoserdova Diversity,Physiology,andBiotechnologicalPotential ofHalo(alkali)philicMethane-ConsumingBacteria. . . . . . . . . . . . . . . . 139 SnehalNariyaandMarinaG.Kalyuzhnaya MetabolicEngineeringofMethanotrophsfortheProduction ofChemicalsandFuels. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 163 OkKyungLee,DiepT.N.Nguyen,andEunYeolLee Methanobactin:ANovelCopper-BindingCompoundProduced byMethanotrophs. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 205 JeremyD.SemrauandAlanA.DiSpirito EnvironmentalApplicationsofMethanotrophs. . . . . . . . . . . . . . . . . . . 231 AdrianHo,MiyeKwon,MarcusA.Horn,andSukhwanYoon Index. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 257 vii List of Contributors SamuelImisiAwala DepartmentofMicrobiology,ChungbukNationalUniversity, Cheongju,RepublicofKorea Paul L. E. Bodelier Department of Microbial Ecology, Netherlands Institute of Ecology(NIOO-KNAW),Wageningen,TheNetherlands SunneyI.Chan NoyesLaboratory,CaliforniaInstituteofTechnology,Pasadena, CA,USA InstituteofChemistry,AcademiaSinica,Nankang,Taipei,Taiwan Ludmila Chistoserdova Department of Chemical Engineering, University of Washington,Seattle,WA,USA Alan A. DiSpirito Roy J. Carver Department of Biochemistry, Biophysics and MolecularBiology,IowaStateUniversity,Ames,IA,USA Adrian Ho Institute for Microbiology, Leibniz Universität Hannover, Hannover, Germany Marcus A. Horn Institute for Microbiology, Leibniz Universität Hannover, Hannover,Germany MarinaG.Kalyuzhnaya DepartmentofBiology,SanDiegoStateUniversity,San Diego,CA,USA ViralInformationInstitute,SanDiegoStateUniversity,SanDiego,CA,USA Sascha M. B. Krause Johann Heinrich von Thünen Institute, Federal Research InstituteforRuralAreas,ForestryandFisheries,Braunschweig,Germany Miye Kwon Department of Civil and Environmental Engineering, KAIST, Daejeon,SouthKorea Eun Yeol Lee Department of Chemical Engineering, Kyung Hee University, Yongin-si,SouthKorea ix x ListofContributors Ok Kyung Lee Department of Chemical Engineering, Kyung Hee University, Yongin-si,SouthKorea SeungJaeLee DepartmentofChemistryandInstituteforMolecularBiologyand Genetics,ChonbukNationalUniversity,Jeonju,RepublicofKorea Snehal Nariya Department of Biology, San Diego State University, San Diego, CA,USA DiepT.N.Nguyen DepartmentofChemicalEngineering,KyungHeeUniversity, Yongin-si,SouthKorea Ngoc-Loi Nguyen Department of Microbiology, Chungbuk National University, Cheongju,RepublicofKorea GermanPérez DepartmentofMicrobialEcology,NetherlandsInstituteofEcology (NIOO-KNAW),Wageningen,TheNetherlands Sung-Keun Rhee Department of Microbiology, Chungbuk National University, Cheongju,RepublicofKorea Jeremy D. Semrau Department of Civil and Environmental Engineering, UniversityofMichigan,AnnArbor,MI,USA AnneliesJ.Veraart DepartmentofAquaticEcologyandEnvironmentalBiology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands Sukhwan Yoon Department of Civil and Environmental Engineering, KAIST, Daejeon,SouthKorea Yue Zheng Department of Chemical Engineering, University of Washington, Seattle,WA,USA CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment,ChineseAcademyofSciences,Xiamen,China UniversityofChineseAcademyofSciences,Beijing,China
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