Table Of Content

Edited by Soumi Dutta Saikat Gochhait EI dn itf eo dr bm y a S ot i uo mn i D R Information Retrieval ue ttt ar · Siev in Bioinformatics a ia k al ti Gn A Practical Approach o B c hi o h ain i tf o r m a t i c s Information Retrieval in Bioinformatics · Soumi Dutta Saikat Gochhait Editors Information Retrieval in Bioinformatics A Practical Approach Editors Soumi Dutta Saikat Gochhait Institute of Engineering & Symbiosis Institute of Digital Management and Telecom Management Kolkata, West Bengal, India Symbiosis International (Deemed University) Pune, Maharashtra, India ISBN 978-981-19-6505-0 ISBN 978-981-19-6506-7 (eBook) https://doi.org/10.1007/978-981-19-6506-7 © The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2022 This work is subject to copyright. All rights are solely and exclusively licensed by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissions that may have been made. The publisher remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. This Palgrave Macmillan imprint is published by the registered company Springer Nature Singapore Pte Ltd. The registered company address is: 152 Beach Road, #21-01/04 Gateway East, Singapore 189721, Singapore Contents 1 Bioinformatics Overviews 1 Ritu Pasrija 2 Artificial Intelligence in Biological Sciences: A Brief Overview 19 Uma Dutta, Nikhil Danny Babu, and Girish S. Setlur 3 A Review of Recent Advances in Translational Bioinformatics and Systems Biomedicine 37 Chittaranjan Baruah, Bhabesh Deka, and Saurov Mahanta 4 Application of Bioinformatics in Agricultural Pest Management: An Overview of the Evolving Technologies 63 Bhabesh Deka, A zariah Babu, a nd Uma D utta 5 Application of Bioinformatics in Health Care and Medicine 83 P. Keerthana and Saikat Gochhait 6 Information Retrieval in Bioinformatics: State of the Art and Challenges 101 Sunita, Sunny Sharma, Vijay Rana, and Vivek Kumar v vi CONTENTS 7 Hybrid Support Vector Machine with Grey Wolf Optimization for Classifying Multivariate Data 111 M. Revathi and D. Ramyachitra 8 Bioinformatics and Its Application in Computing Biological Data 133 Sonali Patil and Annika Durve Gupta Index 155 Editors and Contributors About the Editors Dr. Soumi Dutta She did her B.Tech in Information Technology from WBUT and M.Tech in Computer Science Engineering from WBUT with securing 1st position (Gold medal). She has Ph.D. from Indian Institute of Engineering Science and Technology (IIEST, Shibpur). Dr. Saikat Gochhait is Post-Doctoral Fellow from University of Extremadura, Spain. He has been awarded with MOFA Taiwan Fellow- ship and Ministry of Health Russian Fellowship. He has more than 50 publications in journals indexed in Scopus, WoS, ABDC, Google Scholar, etc. And 6 books published with Springer and IGI Global indexed in Scopus. He features in the P-Rank: A Publication Ranking, HCERES 2021. Contributors Dr. Azariah Babu completed Ph.D. under the guidance of Prof. Dr. T. N. Ananthakrishnan and done Post-Doctoral Research under the guidance of Professor (Mrs.) Silvia Dorn at the SWISS Federal Institute of Technology Zurich (ETH) in the Institute of Plant Sciences, Applied Entomology Zurich, Switzerland. He has more than 28 years of research experience in basic and applied aspects of Entomology. He has been vii viii EDITORSANDCONTRIBUTORS engaged in various aspects of insect-host plant-natural enemy interactions during the past 28 years. Nikhil Danny Babu currently pursuing my Ph.D. in theoretical Condensed Matter Physics at IIT Guwahati. He is interested in low- dimensional quantum systems and bosonization. Dr. Chittaranjan Baruah research is related to the fields of (a) Bioin- formatics: Structural biology, proteomics, molecular phylogeny; (b) Zoology: Fish Biology & Fish biotechnology, Nano-bio-pesticides; and (c) Conservation biology: Turtles & Tortoises of Northeast India. Dr. Bhabesh Deka (Senior Member, IEEE) is currently a Professor with the Department of Electronics and Communication Engineering, Tezpur University. He leads the Computer Vision and Image Processing (CVIP) Laboratory, Department of ECE, Tezpur University. He is also a Principal Investigator of two major research projects sponsored by All India Council for Technical Education (AICTE) and Indian Space Research Organisation (ISRO), Government of India. His research interests include image processing, particularly inverse ill-posed problems, computer vision, compressive sensing MRI, and machine learning for biomedical signal/image analysis. Dr. Uma Dutta is affiliated to Department of Zoology, Cotton Univer- sity. She is currently providing services as Associate Professor. She has authored and co-authored multiple Cell & Molecular Biology. Dr. Annika Durve Gupta is working with B.K Birla College (A) in the Department of Biotechnology. P. Keerthana lives in Chennai and started her career as Electronics and Communication Engineer and currently pursuing a master’s in Analytics and Finance from Symbiosis Institute of Digital and Telecom Manage- ment. As an avid reader, her dream of writing started during her college days and has published a paper on IoT-based medical record-tracking systems for patients. Her strong fascination for the Internet of Things has driven her interest in the emerging field of Translational Bioinformatics. Vivek Kumar is associated as Research Fellow at GNA University, Jalandhar, Punjab, India. EDITORSANDCONTRIBUTORS ix Dr. Saurov Mahanta is associated with National Institute of Electronics and Information Technology, Guwahati with major research area on Bioinformatics. Dr. Ritu Pasrija currently works at the Department of Biochemistry, Maharshi Dayanand University. She does research in Fungal Genetics, Drug Resistance and Organelle Contacts. Sonali Patil is associated as Assistant Professor at the Department of Bioanalytical Sciences, B.K Birla College (Autonomous), Kalyan, Maha- rashtra. Dr. D. Ramyachitra is affiliated to Department of Computer Science, Bharathiar University. He has published numerous publications in various national and international peer-reviewed journals and presented scientific papers across the world. Because of the active association with different societies and academies as well as the contributions, she has been recog- nized by the subject experts around the world. Her contributions are appreciated by various reputed awards. Her clinical and scientific research interests include Grid Computing, Data Mining, and Bioinformatics. Dr. Vijay Rana is working with GNA University, Punjab in the Depart- ment of Computer Science. Dr. M. Revathi is working with Bharathiar University in the Department of Biotechnology. Dr. Girish S. Setlur works in the field of Theoretical Condensed Matter Physics. He is interested in understanding and accounting for the properties of everyday bulk materials from a knowledge of the fundamental constituents of the substance and the fundamental physical laws governing those constituents. He is the inventor of a new technique called ‘non-chiral bosonization’ which is uniquely suited to study strongly inhomogeneous Luttinger liquids. He has also invented the notion of a non-local particle-hole creation operator and showed that it may be used to diagonalize interacting Fermi systems in any dimension. And also interested in topological materials, specifically their nonlinear optical properties. x EDITORSANDCONTRIBUTORS Dr. Sunny Sharma is working with University of Jammu in the Depart- ment of Biotechnology. Dr. Sunita is working with Arni University, Himachal Pradesh in the Department of Computer Science.