Information Retrieval in Bioinformatics: A Practical Approach

167 Pages·2022·2.363 MB·English

by  Soumi Dutta, Saikat Gochhait

Edited by
Soumi Dutta
Saikat Gochhait
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Information Retrieval in Bioinformatics
·
Soumi Dutta Saikat Gochhait
Editors
Information Retrieval
in Bioinformatics
A Practical Approach
Editors
Soumi Dutta Saikat Gochhait
Institute of Engineering & Symbiosis Institute of Digital
Management and Telecom Management
Kolkata, West Bengal, India Symbiosis International (Deemed
University)
Pune, Maharashtra, India
ISBN 978-981-19-6505-0 ISBN 978-981-19-6506-7 (eBook)
https://doi.org/10.1007/978-981-19-6506-7
© The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer
Nature Singapore Pte Ltd. 2022
This work is subject to copyright. All rights are solely and exclusively licensed by the
Publisher, whether the whole or part of the material is concerned, specifically the rights
of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on
microfilms or in any other physical way, and transmission or information storage and
retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology
now known or hereafter developed.
The use of general descriptive names, registered names, trademarks, service marks, etc.
in this publication does not imply, even in the absence of a specific statement, that such
names are exempt from the relevant protective laws and regulations and therefore free for
general use.
The publisher, the authors, and the editors are safe to assume that the advice and informa-
tion in this book are believed to be true and accurate at the date of publication. Neither
the publisher nor the authors or the editors give a warranty, expressed or implied, with
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Contents
1 Bioinformatics Overviews 1
Ritu Pasrija
2 Artificial Intelligence in Biological Sciences: A Brief
Overview 19
Uma Dutta, Nikhil Danny Babu, and Girish S. Setlur
3 A Review of Recent Advances in Translational
Bioinformatics and Systems Biomedicine 37
Chittaranjan Baruah, Bhabesh Deka, and Saurov Mahanta
4 Application of Bioinformatics in Agricultural
Pest Management: An Overview of the Evolving
Technologies 63
Bhabesh Deka, A zariah Babu, a nd Uma D utta
5 Application of Bioinformatics in Health Care
and Medicine 83
P. Keerthana and Saikat Gochhait
6 Information Retrieval in Bioinformatics: State
of the Art and Challenges 101
Sunita, Sunny Sharma, Vijay Rana, and Vivek Kumar
v
vi CONTENTS
7 Hybrid Support Vector Machine with Grey Wolf
Optimization for Classifying Multivariate Data 111
M. Revathi and D. Ramyachitra
8 Bioinformatics and Its Application in Computing
Biological Data 133
Sonali Patil and Annika Durve Gupta
Index 155
Editors and Contributors
About the Editors
Dr. Soumi Dutta She did her B.Tech in Information Technology from
WBUT and M.Tech in Computer Science Engineering from WBUT with
securing 1st position (Gold medal). She has Ph.D. from Indian Institute
of Engineering Science and Technology (IIEST, Shibpur).
Dr. Saikat Gochhait is Post-Doctoral Fellow from University of
Extremadura, Spain. He has been awarded with MOFA Taiwan Fellow-
ship and Ministry of Health Russian Fellowship. He has more than 50
publications in journals indexed in Scopus, WoS, ABDC, Google Scholar,
etc. And 6 books published with Springer and IGI Global indexed in
Scopus. He features in the P-Rank: A Publication Ranking, HCERES
2021.
Contributors
Dr. Azariah Babu completed Ph.D. under the guidance of Prof. Dr. T.
N. Ananthakrishnan and done Post-Doctoral Research under the guid-
ance of Professor (Mrs.) Silvia Dorn at the SWISS Federal Institute of
Technology Zurich (ETH) in the Institute of Plant Sciences, Applied
Entomology Zurich, Switzerland. He has more than 28 years of research
experience in basic and applied aspects of Entomology. He has been
vii
viii EDITORSANDCONTRIBUTORS
engaged in various aspects of insect-host plant-natural enemy interactions
during the past 28 years.
Nikhil Danny Babu currently pursuing my Ph.D. in theoretical
Condensed Matter Physics at IIT Guwahati. He is interested in low-
dimensional quantum systems and bosonization.
Dr. Chittaranjan Baruah research is related to the fields of (a) Bioin-
formatics: Structural biology, proteomics, molecular phylogeny; (b)
Zoology: Fish Biology & Fish biotechnology, Nano-bio-pesticides; and
(c) Conservation biology: Turtles & Tortoises of Northeast India.
Dr. Bhabesh Deka (Senior Member, IEEE) is currently a Professor
with the Department of Electronics and Communication Engineering,
Tezpur University. He leads the Computer Vision and Image Processing
(CVIP) Laboratory, Department of ECE, Tezpur University. He is also
a Principal Investigator of two major research projects sponsored by
All India Council for Technical Education (AICTE) and Indian Space
Research Organisation (ISRO), Government of India. His research inter-
ests include image processing, particularly inverse ill-posed problems,
computer vision, compressive sensing MRI, and machine learning for
biomedical signal/image analysis.
Dr. Uma Dutta is affiliated to Department of Zoology, Cotton Univer-
sity. She is currently providing services as Associate Professor. She has
authored and co-authored multiple Cell & Molecular Biology.
Dr. Annika Durve Gupta is working with B.K Birla College (A) in the
Department of Biotechnology.
P. Keerthana lives in Chennai and started her career as Electronics and
Communication Engineer and currently pursuing a master’s in Analytics
and Finance from Symbiosis Institute of Digital and Telecom Manage-
ment. As an avid reader, her dream of writing started during her college
days and has published a paper on IoT-based medical record-tracking
systems for patients. Her strong fascination for the Internet of Things has
driven her interest in the emerging field of Translational Bioinformatics.
Vivek Kumar is associated as Research Fellow at GNA University,
Jalandhar, Punjab, India.
EDITORSANDCONTRIBUTORS ix
Dr. Saurov Mahanta is associated with National Institute of Electronics
and Information Technology, Guwahati with major research area on
Bioinformatics.
Dr. Ritu Pasrija currently works at the Department of Biochemistry,
Maharshi Dayanand University. She does research in Fungal Genetics,
Drug Resistance and Organelle Contacts.
Sonali Patil is associated as Assistant Professor at the Department of
Bioanalytical Sciences, B.K Birla College (Autonomous), Kalyan, Maha-
rashtra.
Dr. D. Ramyachitra is affiliated to Department of Computer Science,
Bharathiar University. He has published numerous publications in various
national and international peer-reviewed journals and presented scientific
papers across the world. Because of the active association with different
societies and academies as well as the contributions, she has been recog-
nized by the subject experts around the world. Her contributions are
appreciated by various reputed awards. Her clinical and scientific research
interests include Grid Computing, Data Mining, and Bioinformatics.
Dr. Vijay Rana is working with GNA University, Punjab in the Depart-
ment of Computer Science.
Dr. M. Revathi is working with Bharathiar University in the Department
of Biotechnology.
Dr. Girish S. Setlur works in the field of Theoretical Condensed
Matter Physics. He is interested in understanding and accounting for the
properties of everyday bulk materials from a knowledge of the funda-
mental constituents of the substance and the fundamental physical laws
governing those constituents. He is the inventor of a new technique
called ‘non-chiral bosonization’ which is uniquely suited to study strongly
inhomogeneous Luttinger liquids. He has also invented the notion of
a non-local particle-hole creation operator and showed that it may be
used to diagonalize interacting Fermi systems in any dimension. And
also interested in topological materials, specifically their nonlinear optical
properties.
x EDITORSANDCONTRIBUTORS
Dr. Sunny Sharma is working with University of Jammu in the Depart-
ment of Biotechnology.
Dr. Sunita is working with Arni University, Himachal Pradesh in the
Department of Computer Science.