High Performance Computing for Computational Science – VECPAR 2018: 13th International Conference, São Pedro, Brazil, September 17-19, 2018, Revised Selected Papers PDF
Preview High Performance Computing for Computational Science – VECPAR 2018: 13th International Conference, São Pedro, Brazil, September 17-19, 2018, Revised Selected Papers
Hermes Senger · Osni Marques · Rogerio Garcia · Tatiana Pinheiro de Brito · Rogério Iope · Silvio Stanzani · Veronica Gil-Costa (Eds.) 3 3 High Performance Computing 3 1 1 for Computational Science – S C VECPAR 2018 N L 13th International Conference São Pedro, Brazil, September 17–19, 2018 Revised Selected Papers 123 Lecture Notes in Computer Science 11333 Commenced Publication in 1973 Founding and Former Series Editors: Gerhard Goos, Juris Hartmanis, and Jan van Leeuwen Editorial Board Members David Hutchison Lancaster University, Lancaster, UK Takeo Kanade Carnegie Mellon University, Pittsburgh, PA, USA Josef Kittler University of Surrey, Guildford, UK Jon M. Kleinberg Cornell University, Ithaca, NY, USA Friedemann Mattern ETH Zurich, Zurich, Switzerland John C. Mitchell Stanford University, Stanford, CA, USA Moni Naor Weizmann Institute of Science, Rehovot, Israel C. Pandu Rangan Indian Institute of Technology Madras, Chennai, India Bernhard Steffen TU Dortmund University, Dortmund, Germany Demetri Terzopoulos University of California, Los Angeles, CA, USA Doug Tygar University of California, Berkeley, CA, USA More information about this series at http://www.springer.com/series/7407 Hermes Senger Osni Marques (cid:129) (cid:129) Rogerio Garcia Tatiana Pinheiro de Brito (cid:129) (cid:129) é Rog rio Iope Silvio Stanzani (cid:129) (cid:129) Veronica Gil-Costa (Eds.) High Performance Computing – for Computational Science VECPAR 2018 13th International Conference ã – S o Pedro, Brazil, September 17 19, 2018 Revised Selected Papers 123 Editors Hermes Senger OsniMarques Federal University of São Carlos Lawrence BerkeleyNational Laboratory São Carlos, São Paulo, Brazil Berkeley, CA, USA RogerioGarcia Tatiana Pinheiro deBrito Universidade EstadualPaulista Júlio Universidade EstadualPaulista Júlio deMesquita Filho deMesquita Filho Presidente Prudente, São Paulo,Brazil São Paulo, São Paulo, Brazil RogérioIope Silvio Stanzani Universidade EstadualPaulista Júlio Universidade EstadualPaulista Júlio deMesquita Filho deMesquita Filho São Paulo, São Paulo, Brazil São Paulo, São Paulo, Brazil Veronica Gil-Costa Universidad NacionaldeSan Luis SanLuis, Argentina ISSN 0302-9743 ISSN 1611-3349 (electronic) Lecture Notesin Computer Science ISBN 978-3-030-15995-5 ISBN978-3-030-15996-2 (eBook) https://doi.org/10.1007/978-3-030-15996-2 LibraryofCongressControlNumber:2019934743 LNCSSublibrary:SL1–TheoreticalComputerScienceandGeneralIssues ©SpringerNatureSwitzerlandAG2019 Thisworkissubjecttocopyright.AllrightsarereservedbythePublisher,whetherthewholeorpartofthe material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilarmethodologynow knownorhereafterdeveloped. Theuseofgeneraldescriptivenames,registerednames,trademarks,servicemarks,etc.inthispublication doesnotimply,evenintheabsenceofaspecificstatement,thatsuchnamesareexemptfromtherelevant protectivelawsandregulationsandthereforefreeforgeneraluse. Thepublisher,theauthorsandtheeditorsaresafetoassumethattheadviceandinformationinthisbookare believedtobetrueandaccurateatthedateofpublication.Neitherthepublishernortheauthorsortheeditors give a warranty, expressed or implied, with respect to the material contained herein or for any errors or omissionsthatmayhavebeenmade.Thepublisherremainsneutralwithregardtojurisdictionalclaimsin publishedmapsandinstitutionalaffiliations. ThisSpringerimprintispublishedbytheregisteredcompanySpringerNatureSwitzerlandAG Theregisteredcompanyaddressis:Gewerbestrasse11,6330Cham,Switzerland Preface The International Meeting on High-Performance Computing for Computational Science (VECPAR) is a biannual conference and a major venue for the presentation and discussion of the latest research and practice in high-end computer modeling and complex systems. The audience and participants of VECPAR are researchers and students in academic departments, government laboratories, and industrial organiza- tions. There is a permanent website for the conference series at http://vecpar.fe.up.pt, maintained by the Faculty of Engineering of the University of Porto. The13theditionofVECPARwasorganizedinSãoPedro,Brazil,duringSeptember 17–19, 2018. Previous editions of VECPAR were held in Porto (Portugal, 2016), Oregon (USA, 2014), Kobe (Japan, 2012), Berkeley (USA, 2010), Toulose (France, 2008), Rio de Janeiro (Brazil, 2006), Valencia (Spain, 2004), and Porto (Portugal, 2002, 2000, 1998, 1996 and 1993). ThiseditionofVECPARhadaveryexcitingprogramwith17fullpapersaccepted, one short paper, and two posters, contributed by authors from 15 different countries. The acceptance rate was 53%, repeating the pattern of previous editions. We had a varied selection of papers, with major themes covering heterogeneous systems, shared memory systems and GPUs, and techniques including domain decomposition, scheduling and load balancing, with a strong focus on computational science applications. To enrich the conference, we had five keynote presentations: (cid:129) Gabriel Wainer (Carleton University), “Simulation Everywhere” (cid:129) RichardVuduc(GeorgiaInstituteofTechnology),“AnAlgorithm,aDataStructure, and a Machine That All (Try to) Move or Store Fewer Bits” (cid:129) Kentaro Sano (R-CCS, RIKEN), “FPGA-Based Data-Flow Computing for High-Performance Numerical Simulation” (cid:129) Tal Ben-Num (ETH Zurich), “Demystifying Parallel and Distributed Deep Learning” (cid:129) Gerard Gorman (Imperial College), “Code Generation for Finite Difference and Data Inversion – Where Angles Fear to Thread” VECPAR 2018 also held a panel discussion focused on the convergence of HPC and AI in the context of science and industry. The invited panelists were: Dr. Pedro Cruz (NVIDIA, Brazil), Dra. Carla Oshtoff (LNCC, Brazil), Dr. Edson Borin (Unicamp, Brazil), Dr. Eduardo Michelis (LNLS, Brazil), and Dr. Gerard Gorman (ImperialCollege,UK).ThepanelwasmoderatedbyDr.OsniMarques(LBNL,USA). Thesocialprogramoftheconferenceincludedawelcomereceptionpartywithlocal specialtiesintheeveningofthefirstday,andafantasticgaladinnerwithlivemusicat the end of the second day. The most significant contributions to VECPAR 2018 are made available in the present book, edited after the conference and after a second review of all accepted vi Preface papers that werepresented. Thepapersubmission and selection weremanagedviathe EasyChair conference management system. The success of the VECPAR conference and its long life are a result of the collaboration of many people. In particular, for their contribution to the present book, we would like to thank all the authors for their work and for meeting the tight deadlines, and all members of the Scientific Committee for their commitment and invaluable contribution in the selection of papers. January 2019 Hermes Senger Osni Marques Rogerio Garcia Tatiana Pinheiro Rogério Iope Silvio Stanzani Veronica Gil-Costa Organization VECPAR2018,the13theditionoftheVECPARseriesofconferences,wasorganized by Universidade Estadual Paulista Júlio de Mesquita Filho, UNESP (Brazil), Universidade Federal de São Carlos, UFSCar (Brazil), Universidade do Porto (Portugal), and Universidad Nacional de San Luis (Argentina). Executive Committee Hermes Senger Federal University of São Carlos, Brazil Inês Dutra University of Porto, Portugal Osni Marques LBL, USA Rogerio Garcia UNESP, Brazil Tatiana Pinheiro UNESP, Brazil Rogério Iope UNESP, Brazil Silvio Stanzani UNESP, Brazil Veronica Gil-Costa UNSL, Argentina Steering Committee Osni Marques (Chair) Lawrence Berkeley National Laboratory, USA Alvaro Coutinho COPPE/UFRJ, Brazil Michel Daydé ENSEEIHT, France Jack Dongarra University of Tennessee, USA Inês Dutra University of Porto, Portugal Kengo Nakajima University of Tokyo, Japan Sameer Shende University of Oregon, USA Scientific Committee A. Augusto Sousa, Portugal Antonio J.Tomeu-Hardasmal, Spain Abdelkader Hameurlain, France Calebe Bianchini, Brazil Akihiro Ida, Japan Carla Osthoff Barros, Brazil Akihiro Fujii, Japan Carlos Alvarez, Colombia Alberto Proenca, Portugal Claudio Amorim, Brazil Aleardo Manacero, Brazil Claudio Geyer, Brazil Alex Breuer, USA Cristina Boeres, Brazil Alexandre Sena, Brazil Daniel Cordeiro, Brazil Alexey Lastovetsky. Ireland Daniel Kressner, Switzerland Alfredo Goldman, Brazil Doallo Ramón, Spain Alonso Inostrosa Psijas, Chile Dolores Rexachs, Spain Alvaro Coutinho, Brazil Edson Borin, Brazil viii Organization Emilio Francesquini, Brazil Paulo Vasconcelos, Portugal Erika Rosas, Chile Paulo Lopes De Souza, Brazil Felipe M. G. França, Brazil Pedro Ribeiro, Portugal Fernando Silva, Portugal Pedro Medeiros, Portugal Filipe Araujo, Portugal Piotr Luszczek, USA Francisco F. Rivera, Spain R. Marcelo Naiouf, Argentina Frederic Suter, France Raffaele Perego, Italy Gerard Gorman, UK Reiji Suda, Japan Helio Guardia, Brazil Ricardo Rocha, Portugal Hervé Paulino, Portugal Rizos Sakellariou, UK Jakub Kurzak, USA Rodolfo Azevedo, Brazil João Cardoso, Portugal Rogerio Garcia, Brazil Jorge G. Barbosa, Portugal Rubén Apolloni, Argentina Jorge González-Domínguez, Spain Rui Camacho, Portugal Juan Mallarino, Colombia Rui Ralha, Portugal Keita Teranishi, USA Sameer Shende, USA Kengo Nakajima, Japan Samuel Xavier de Souza, Brazil Kenji Ono, Japan Satoshi Ohshima, Japan Leandro A. J. Marzulo, Brazil Stéphane Lanteri, France Leonel Sousa, Portugal Takahiro Katagiri, Japan Lígia Ribeiro, Portugal Takeshi Iwashita, Japan Lucia Catabriga, Brazil Tetsuya Sakurai, Japan Lúcia Drummond, Brazil Tomas Margalef, Spain Luís Veiga, Portugal Toshiyuki Imamura, Japan Marcelo Mendoza, Chile Vinod Rebello, Brazil Marco Netto, Brazil Wei Wu, USA Masatoshi Kawai, Japan Weichung Wang, Taiwan Miroslav Tuma, Czech Xavier Vasseur, France Paolo Romano, Portugal Xing Cai, Norway Paul Lin, USA Organization ix Sponsoring Institutions The São Paulo Funding Agency - FAPESP Springer International Publishing Huawei do Brasil Telecomunicações and Vivo Open Cloud Hewlett Packard Enterprise and Intel Semicondutores do Brasil Agência UNESP de Inovação and Santander Universidades Research Centre for Gas Innovation, The University of São Paulo (USP) Platinum Sponsors Gold Sponsors Bronze Sponsor Funding Agency Supporters
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