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Foundations in microbiology : basic principles PDF

937 Pages·2012·86.699 MB·English
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This page intentionally left blank This page intentionally left blank ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee ii 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees TM ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee iiii 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees TM FOUNDATIONS IN MICROBIOLOGY, EIGHTH EDITION Published by McGraw-Hill, a business unit of The McGraw-Hill Companies, Inc., 1221 Avenue of the Americas, New York, NY 10020. Copyright © 2012 by The McGraw-Hill Companies, Inc. All rights reserved. Previous editions © 2008, 2005, and 2002. No part of this publication may be reproduced or distributed in any form or by any means, or stored in a database or retrieval system, without the prior written consent of The McGraw-Hill Companies, Inc., including, but not limited to, in any network or other electronic storage or transmission, or broadcast for distance learning. Some ancillaries, including electronic and print components, may not be available to customers outside the United States. This book is printed on acid-free paper. 1 2 3 4 5 6 7 8 9 0 DOW/DOW 1 0 9 8 7 6 5 4 3 2 1 ISBN 978-0-07-337529-8 MHID 0-07-337529-2 Vice President, Editor-in-Chief: Marty Lange Vice President, EDP: Kimberly Meriwether David Senior Director of Development: Kristine Tibbetts Sponsoring Editor: Lynn M. Breithaupt Senior Developmental Editor: Kathleen R. Loewenberg Marketing Manager: Amy L. Reed Senior Project Manager: Jayne L. Klein Senior Buyer: Laura Fuller Senior Media Project Manager: Jodi K. Banowetz Designer: Tara McDermott Cover Designer: Elise Lansdon Cover Image: © Luke Jerram Lead Photo Research Coordinator: Carrie K. Burger Photo Research: Danny Meldung/Photo Affairs, Inc Compositor: Aptara®, Inc. Typeface: 10/12 Times New Roman Printer: R. R. Donnelley All credits appearing on page or at the end of the book are considered to be an extension of the copyright page. Library of Congress Cataloging-in-Publication Data Talaro, Kathleen P. Foundations in microbiology / Kathleen Park Talaro, Barry Chess. — 8th ed. p. cm. Includes bibliographical references and index. ISBN 978-0-07-337529-8 — ISBN 0-07-337529-2 (hard copy : alk. paper) 1. Microbiology. 2. Medical microbiology. I. Chess, Barry. II. Title. QR41.2.T35 2012 579–dc22 2010036445 www.mhhe.com ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee iiiiii 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees Brief Contents 1 15 CHAPTER CHAPTER The Main Themes of Microbiology 1 Adaptive, Specifi c Immunity and Immunization 452 2 16 CHAPTER CHAPTER The Chemistry of Biology 27 Disorders in Immunity 486 3 17 CHAPTER CHAPTER Tools of the Laboratory: Methods of Studying Procedures for Identifying Pathogens and Diagnosing Microorganisms 58 Infections 517 4 18 CHAPTER CHAPTER A Survey of Prokaryotic Cells and Microorganisms 89 The Gram-Positive and Gram-Negative Cocci of Medical Importance 539 5 CHAPTER 19 A Survey of Eukaryotic Cells and Microorganisms 123 CHAPTER The Gram-Positive Bacilli of Medical Importance 569 6 CHAPTER 20 An Introduction to Viruses 158 CHAPTER The Gram-Negative Bacilli of Medical Importance 599 7 CHAPTER 21 Microbial Nutrition, Ecology, and Growth 185 CHAPTER Miscellaneous Bacterial Agents of Disease 627 8 CHAPTER 22 An Introduction to Microbial Metabolism: The Chemical CHAPTER Crossroads of Life 217 The Fungi of Medical Importance 659 9 23 CHAPTER CHAPTER Microbial Genetics 254 The Parasites of Medical Importance 686 10 24 CHAPTER CHAPTER Genetic Engineering: A Revolution in Molecular Introduction to Viruses That Infect Humans: The DNA Biology 291 Viruses 723 11 25 CHAPTER CHAPTER Physical and Chemical Agents for Microbial Control 319 The RNA Viruses That Infect Humans 747 12 26 CHAPTER CHAPTER Drugs, Microbes, Host—The Elements of Environmental Microbiology 784 Chemotherapy 351 27 CHAPTER 13 CHAPTER Applied and Industrial Microbiology 807 Microbe-Human Interactions: Infection and Disease 386 14 CHAPTER An Introduction to Host Defenses and Innate Immunities 424 iii ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee iivv 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees About the Authors Kathleen Park Talaro is a microbiologist, educator, author, and artist. She has been nurturing her love of microbi- ology since her youth growing up on an Idaho farm where she was fi rst fascinated by tiny creatures she could just barely see swimming in a pond. This interest in the microbial world led to a biology major at Idaho State University, where she worked as a teaching assistant and scientifi c illustrator for one of her pro- fessors. This was the beginning of an avocation which she con- tinues today—that of lending her artistic hand to interpretation of scientifi c concepts. She continued her education at Arizona State University, Occidental College, California Institute of Tech- nology, and California State University. She has taught microbiology and major’s biology courses at Pasadena City College for 30 years, during which time she de- veloped new curricula and refi ned laboratory experiments. She Kathy Talaro (right) and her daughter, Nicole. has been an author of, and contributor to, several publications of the William C. Brown Company and McGraw-Hill Publishers since the early 1980s, fi rst illustrating and writing for laboratory manuals and later developing this textbook. She has also served Dedication as a coauthor with Kelly Cowan on the fi rst two editions of Microbiology: A Systems Approach. We wish to dedicate this book to microbes, those Kathy continues to make microbiology a signifi cant focus of her life and is passionate about conveying the signifi cance ingenious beings that beckon us into another realm and practical knowledge of the subject to everyone, regardless of their profession or position. In addition to her writing, she that exists beyond our naked eyes. We marvel at their keeps current attending conferences and participating in the American Society for Microbiology and its undergraduate edu- fantastic variety and wild, exotic ways of life. And cational programs. She is gratifi ed by the many supportive notes and letters she has received over the years from book even after many lifetimes of study, we still have much adopters and students. to learn from the tiny “animalcules” that Leeuwenhoek She lives in Altadena, California with husband Dave Bedro- sian, and son David. Whenever she can, she spends time with fi rst saw over 300 years ago in “such enormous her daughter Nicole, who lives in Wyoming. In her spare time she enjoys photography, reading true crime books, music, numbers that all the water seemed to be alive.” crossword puzzles, and playing with her seven rescued kitties. iv ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee vv 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees About the Authors The addition of two proven educators makes a great learning system even better Barry Chess Writing a textbook takes an enormous amount of time has been teach- and effort. No textbook author has the time to write a great ing microbiology at Pasadena City textbook and also write an entire book’s worth of accompa- College for 14 years. He received nying digital learning tools—at least not with any amount of his Bachelor’s and Master’s de- success or accuracy. In the past, this material has often been grees from California State Univer- built after the text publishes, but hopefully in time for classes sity, Los Angeles, and did several to start. With the new digital era upon us, it is time to begin years of post-graduate work at the thinking of digital tools differently. In classrooms across the University of California, Irvine, country, thousands of students who are visual learners and where his research focused on the have been using computers, expression of eukaryotic genes in- video games, smart phones, volved in the development of mus- music players, and a variety of cle and bone. other gadgets since they could At Pasadena City College, Barry developed a new course talk are begging for an interac- in human genetics and helped to institute a biotechnology tive way to learn their course program. He regularly teaches courses in microbiology, material. Enter the digital general biology, and genetics, and works with students com- author. With this eighth edition, pleting independent research projects in biology and micro- we are excited to add professor biology. Over the past several years, Barry’s interests have Heidi Smith from Front Range begun to focus on innovative methods of teaching that lead Community College to the Talaro/ to greater student understanding. He has written cases for Chess team. Heidi teaches microbiology and anatomy & physi- the National Center for Case Study Teaching in Science and ology and has worked hand-in-hand with the textbook authors, presented talks at national meetings on the use of case stud- creating online tools that truly complement and enhance the ies in the classroom. In 2009, his laboratory manual, Labora- book’s content. She ensured that all key topics in the book have tory Applications in Microbiology: A Case Study Approach, was interactive, engaging activities spanning levels of Bloom’s tax- published. He is thrilled and feels very fortunate to be onomy, and tied to Learning Outcomes in the book. Instructors collaborating with Kathy Talaro, with whom he has worked can now assign material based on what they cover in class, as- in the classroom for more than a decade, on this eighth sess their students on the Learning Outcomes, and run reports edition. Barry is a member of the American Society for indicating individual and/or class performance on a variety of Microbiology and regularly attends meetings in his fields of data. Because of Heidi, we can now offer you a robust digital interest, both to keep current of changes in the discipline learning program, tied to Learning Outcomes, to enhance your and to exchange teaching and learning strategies with oth- lecture and lab, whether you run a traditional, hybrid, or fully ers in the field. online course. “I am gratifi ed to introduce Barry Chess, a professor at Pasadena City College, as my coauthor on this new edition. He promises to bring a fresh eye to this project along with his own expertise in genetics and molecular biology, and a commitment to crafting a high quality product. Barry has an easy, very reader-friendly writing style that complements my own. He is astute and knowledgeable, with a rare ability to get to the heart of complex principles yet keep the reader involved and interested along the way. He often incorporates anecdotes, mnemonic devices, case studies, and analogies for helping students to learn and understand more diffi cult and abstract concepts.” —Kathleen Park Talaro v ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee vvii 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees Integrated Learning System Customized to your Course Outcomes ® McGraw-Hill Higher Education and Blackboard have teamed up! What does this mean for you? 1. Your life, simplifi ed. Now you and your students can access McGraw- Hill’s Connect™ and Create™ right from within your Blackboard course – all with one single sign-on. Say goodbye to the days of logging in to multiple applications. 2. Deep integration of content and tools. Not only do you get single sign-on with Connect™ and Create™, you also get deep integration of McGraw-Hill content and content engines right in Blackboard. Whether you’re choosing a book for your course or building Connect™ assignments, all the tools you need are right where you want them—inside of Blackboard. 3. Seamless Gradebooks. Are you tired of keeping multiple gradebooks and manually synchronizing grades into Blackboard? We thought so. When a student completes an integrated Connect™ assignment, the grade for that assignment automatically (and instantly) feeds your Blackboard grade center. 4. A solution for everyone. Whether your institution is already using Blackboard or you just want to try Blackboard on your own, we have a solution for you. McGraw-Hill and Blackboard can now offer you easy access to industry leading technology and content, whether your campus hosts it, or we do. Be sure to ask your local McGraw-Hill representative for details. (cid:1) vi ttaaLL7755229922__ffmm__ii--xxxxxxiiii..iinndddd PPaaggee vviiii 1122//1100//1100 1111::0055 AAMM uusseerr--ff446699 //VVoolluummee//220011//MMHHDDQQ224455//ttaaLL7755229922__ddiisskk11ooff11//00007733337755229922//ttaaLL7755229922__ppaaggeeffiillees Introducing ConnectPlus Microbiology McGraw-Hill ConnectPlusTM Microbiology integrated learning platform provides auto-graded assessments, a customizable, assignable eBook, an adaptive diagnostic tool, and powerful reporting against Learning Outcomes and level of difficulty—all in an easy-to-use interface. “. . . I and my adjuncts have reduced the time we spend on grading by 90 percent and student test scores have risen, on average, 10 points since Save time with auto-graded assessments and tutorials we began using Connect!” Fully editable, customizable, auto-graded interactive assignments using high —William Hoover, Bunker Hill quality art from the textbook, and animations and videos from a variety of Community College sources take you way beyond multiple choice. Assignable content is available for every Learning Outcome in the book. Extremely high quality content, created by digital author Heidi Smith, includes case study modules, concept mapping activities, animated learning modules, and more! Generate powerful data related to student performance against Learning Outcomes, specific topics, level of difficulty, and more. vii

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