Evolutionary Dynamics: Exploring the Interplay of Selection, Accident, Neutrality, and Function

487 Pages·2003·26.96 MB·English

by  James P. Crutchfield

Evolutionary Dynamics
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Evolutionary Dynamics:
Exploring the Interplay
of Selection, Accident,
Neutrality, and Function
Editors
James P. Crutchfield
Santa Fe Institute
Peter Schuster
University of Vienna
Santa Fe Institute
Studies in the Sciences of Complexity
OXFORD
UNIVERSITY PRESS
2003
OXFORD
UNIVERSITY PRESS
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Library of Congress Cataloging-in-Publication Data
Evolutionary dynamics : exploring the interplay of selection, accident, neutrality,
and function / editors, James P. Crutchfield, Peter Schuster.
p. cm.—(Santa Fe Institute studies in the sciences of complexity)
Includes bibliographical references and index.
ISBN 0-19-514264-0; ISBN 0-19-514265-9 (pbk.)
I. Evolution (Biology) I. Crutchfield, James P. (James Patrick)
II. Schuster, Peter, 1939- III. Proceedings volume in the Santa Fe Institute
studies in the sciences of complexity.
QH366.2 .E867 2002
576.8—dc21 2002025267
9 8 7 6 5 4 3 21
Printed in the United States of America
on acid-free paper
About the Santa Fe Institute
The Santa Fe Institute (SFI) is a private, independent, multidisciplinary
research and education center, founded in 1984. Since its founding, SFI has
devoted itself to creating a new kind of scientific research community, pursuing
emerging science. Operating as a small, visiting institution, SFI seeks to
catalyze new collaborative, multidisciplinary projects that break down the
barriers between the traditional disciplines, to spread its ideas
and methodologies to other individuals, and to encourage the practical
applications of its results.
All titles from the Santa Fe Institute Studies
in the Sciences of Complexity series
carry this imprint which is based on a
Mimbres pottery design (circa A.D.
950-1150), drawn by Betsy Jones.
The design was selected because the
radiating feathers are evocative of
the outreach of the Santa Fe Institute
Program to many disciplines and institutions.
Santa Fe Institute
Studies in the Sciences of Complexity
Lecture Notes Volume
Author Title
Eric Bonabeau, Marco Dorigo, and Swarm Intelligence: Prom
Guy Theraulaz Natural to Artificial Systems
Proceedings Volumes
Editor Title
James H. Brown and Scaling in Biology
Geoffrey B. West
Timothy A. Kohler and Dynamics in Human and Primate
George J. Gumerman Societies
Lee A. Segel and Design Principles for the Immune
Irun Cohen System and Other Distributed
Autonomous Systems
H. Randy Gimblett Integrating Geographic Information
Systems and Agent-Based Modeling
Techniques
James P. Crutchfield and Evolutionary Dynamics: Exploring
Peter Schuster the Interplay of Selection, Accident,
Neutrality, and Function
Contributors List
Lionel Barnett, University of Sussex, Centre for Computational Neuroscience and
Robotics, School of Cognitive and Computing Sciences, Brighton BN1 9QG, United
Kingdon; e-mail: [email protected]
Aviv Bergman, Stanford University, Center for Computational Genetics and
Biological Modelling, 385 Serra Herrin 428, Stanford, CA 94305-5020; e-mail:
aviv@stanford. edu
Stefan Bornholdt, Universitat Kiel, Inst. fur Theoretische Physik, Leibnizstr. 15,
D-24098 Kiel, Germany; e-mail: [email protected]
James P. Crutchfield, Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM
87501; e-mail: [email protected]
Rajarshi Das, IBM T.J.Watson Research Center, P.O. Box 704, Yorktown Heights,
NY 10598; e-mail: [email protected]
Gunther Eble, National Museum of Natural History, Smithsonian Institution,
MRC-122, Washington, DC 20560 and Santa Fe Institute, 1399 Hyde Park Road,
Santa Fe, NM 87501. Present Address: Centre National de la Recherche Scientific,
UMR 5561, 6 Boulevard Gabriel, 21000 Dijon, France; e-mail: [email protected]
Niles Eldredge, American Museum of Natural History, Central Park West at 79th
Street, New York, NY 10024-5192; e-mail: [email protected]
Marcus W. Feldman, Stanford University, Department of Biological Sciences,
Stanford, CA 94305-5020; e-mail: [email protected]
Sergey Gavrilets, University of Tennessee, Ecology and Evolutionary Biology,
Knoxville, TN 37996; e-mail: [email protected]
Johan Johansson, Chalmers University, Department of Microelectronics and
Nanoscience, SE-41296, Goteborg, Sweden; e-mail: [email protected]
Michael Lachmann, Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM
87501; e-mail: [email protected]
Kristian Lindgren, Chalmers University, Department of Physical Resource Theory,
SE-41296, Goteborg, Sweden; e-mail: [email protected]
Melanie Mitchell, Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501;
e-mail: [email protected]
Martin Nilsson, Los Alamos National Laboratory, Geology and Subsurface, Mail
Stop D450, Los Alamos, NM 87545; e-mail: [email protected]
Tomoko Ohta, National Institute of Genetics, Division of Population Genetics, Yata
1111 Mishima, Shizuoka 411-8540, Japan; e-mail: [email protected]
Peter Schuster, University of Vienna, Waehringerstrasse 17, A-1090 Wien,
Austria; e-mail: [email protected]
Guy Sella, Stanford University/Tel Aviv University, Department of Biological
Sciences, Stanford, CA 94305; e-mail: [email protected]
Nigel Snoad, Nuix, Level 8, 433 York Street, Sydney 2000, Australia; e-mail:
nigel@santafe. edu
Peter Stadler, University of Vienna, Inst. fur Theoretische Chemie und Molekulare
Strukfurbiologie, Wahringerstraflbe 17, A-1090 Wien, Austria; e-mail:
stadler@santafe. edu
Santa Fe Institute Editorial Board
September 2000
Ronda K. Butler-Villa, Chair
Director of Publications, Facilities, & Personnel, Santa Fe Institute
Dr. David K. Campbell
Department of Physics, Boston University
Prof. Marcus W. Feldman
Institute for Population & Resource Studies, Stanford University
Prof. Murray Gell-Mann
Division of Physics & Astronomy, California Institute of Technology
Dr. Ellen Goldberg
President, Santa Fe Institute
Prof. George J. Gumerman
Arizona State Museum, University of Arizona
Dr. Thomas B. Kepler
Vice President for Academic Affairs, Santa Fe Institute
Prof. David Lane
Dipartimento di Economia Politica, Modena University, Italy
Prof. Simon Levin
Department of Ecology & Evolutionary Biology, Princeton University
Prof. John Miller
Department of Social & Decision Sciences, Carnegie Mellon University
Prof. David Pines
Department of Physics, University of Illinois
Dr. Charles F. Stevens
Molecular Neurobiology, The Salk Institute