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Cross-relaxation and cross-correlation parameters in NMR: molecular approaches PDF

336 Pages·2018·6.507 MB·English
by  CanetDaniel
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Cross-relaxation and Cross-correlation Parameters in NMR Molecular Approaches 1 0 0 P F 5- 7 4 2 2 6 2 8 7 1 8 7 9 9/ 3 0 1 0. 1 oi: d g | or c. s s.r b u p p:// htt n o 7 1 0 2 er b o ct O 9 0 n o d e h s bli u P View Online New Developments in NMR Editor-in-Chief: William S. Price, University of Western Sydney, Australia 1 0 0 P Series Editors: F 75- Sharon Ashbrook, University of St Andrews, UK 4 22 Bruce Balcom, University of New Brunswick, Canada 6 82 Istv´an Furo´, Industrial NMR Centre at KTH, Sweden 7 81 Masatsune Kainosho, Tokyo Metropolitan University, Japan 7 9 Maili Liu, Chinese Academy of Sciences, Wuhan, China 9/ 3 0 1 0. Titles in the Series: 1 doi: 1: Contemporary Computer-Assisted Approaches to Molecular Structure g | Elucidation or c. 2: New Applications of NMR in Drug Discovery and Development s s.r 3: Advances in Biological Solid-State NMR b u p 4: Hyperpolarized Xenon-129 Magnetic Resonance: Concepts, Production, http:// Techniques and Applications n 5: Mobile NMR and MRI: Developments and Applications o 17 6: Gas Phase NMR 0 2 7: Magnetic Resonance Technology: Hardware and System er b Component Design o Oct 8: Biophysics and Biochemistry of Cartilage by NMR and MRI 9 0 9: Diffusion NMR of Confined Systems: Fluid Transport in Porous Solids n d o and Heterogeneous Materials he 10: NMR in Glycoscience and Glycotechnology s bli 11: Fast NMR Data Acquisition: Beyond the Fourier Transform u P 12: Cross-relaxation and Cross-correlation Parameters in NMR: Molecular Approaches How to obtain future titles on publication: Astandingorderplanisavailableforthisseries.Astandingorderwillbring delivery of each new volume immediately on publication. For further information please contact: BookSalesDepartment,RoyalSocietyofChemistry,ThomasGrahamHouse, Science Park, Milton Road, Cambridge, CB4 0WF, UK Telephone: þ44 (0)1223 420066, Fax: þ44 (0)1223 420247 Email: [email protected] Visit our website at www.rsc.org/books View Online Cross-relaxation and Cross-correlation Parameters 1 in NMR 0 0 P F 5- Molecular Approaches 7 4 2 2 6 2 8 7 1 8 7 9 9/ 3 10 Edited by 0. 1 oi: g | d Daniel Canet or Universite de Lorraine, France c. s.rs Email: [email protected] b u p p:// htt n o 7 1 0 2 er b o ct O 9 0 n o d e h s bli u P View Online 1 0 0 P F 5- 7 4 2 2 6 2 8 7 1 8 7 9/9 NewDevelopmentsinNMRNo.12 3 0 1 0. PrintISBN:978-1-84973-913-9 1 oi: PDFeISBN:978-1-78262-247-5 d g | EPUBeISBN:978-1-78801-236-2 or ISSN:2044-253X c. s s.r b AcataloguerecordforthisbookisavailablefromtheBritishLibrary u p http:// rTheRoyalSocietyofChemistry2018 n o 7 Allrightsreserved 1 0 2 er Apartfromfairdealingforthepurposesofresearchfornon-commercialpurposesorfor b o privatestudy,criticismorreview,aspermittedundertheCopyright,DesignsandPatents ct O Act1988andtheCopyrightandRelatedRightsRegulations2003,thispublicationmaynot 09 bereproduced,storedortransmitted,inanyformorbyanymeans,withouttheprior on permissioninwritingofTheRoyalSocietyofChemistryorthecopyrightowner,orinthe ed caseofreproductioninaccordancewiththetermsoflicencesissuedbytheCopyright h blis LicensingAgencyintheUK,orinaccordancewiththetermsofthelicencesissuedby u theappropriateReproductionRightsOrganizationoutsidetheUK.Enquiriesconcerning P reproductionoutsidethetermsstatedhereshouldbesenttoTheRoyalSocietyof Chemistryattheaddressprintedonthispage. Whilstthismaterialhasbeenproducedwithallduecare,TheRoyalSocietyofChemistry cannotbeheldresponsibleorliableforitsaccuracyandcompleteness,norforany consequencesarisingfromanyerrorsortheuseoftheinformationcontainedinthis publication.Thepublicationofadvertisementsdoesnotconstituteanyendorsementby TheRoyalSocietyofChemistryorAuthorsofanyproductsadvertised.Theviewsand opinionsadvancedbycontributorsdonotnecessarilyreflectthoseofTheRoyalSociety ofChemistrywhichshallnotbeliableforanyresultinglossordamagearisingasaresult ofrelianceuponthismaterial. TheRoyalSocietyofChemistryisacharity,registeredinEnglandandWales, Number207890,andacompanyincorporatedinEnglandbyRoyalCharter (RegisteredNo.RC000524),registeredoffice:BurlingtonHouse,Piccadilly, LondonW1J0BA,UK,Telephone:þ44(0)20743786556. Forfurtherinformationseeourwebsiteatwww.rsc.org PrintedintheUnitedKingdombyCPIGroup(UK)Ltd,Croydon,CR04YY,UK 5 0 0 P F 75- Preface 4 2 2 6 2 8 7 1 8 7 9 9/ 3 0 1 0. 1 Sometimeago,IwasaskedbyProfessorWilliamS.Pricetobetheeditorofa doi: book about cross-correlation in NMR. I found the idea fairly interesting, but org | at first (and only at first), that it might appear as a sibylline and restricted sc. subject.IansweredBillthatcross-correlationisevidentlyrelatedto(andpart bs.r of)spinrelaxationbutthatspinrelaxationwaspersetoobroadasubject.By u p://p contrast, it could be interesting to add cross-relaxation to the initial title of htt the project. In fact, what are called cross-correlation relaxation rates can n beconsideredaswellaspertainingtocross-relaxation.Theconceptofcross- o 17 relaxation wasintroduced asearlyas1953 byA.W.Overhauser, whohadto 0 er 2 face controversy, because his idea was revolutionary. He predicted that, by ob irradiating electronspins, nuclear spins would be enhancedby the transfer ct O of electron polarization. This idea was rapidly extended to cross-relaxation 9 0 among nuclear spins with the tremendous applications known as the n d o nuclear Overhauser effect (nOe), which generated a new era in nuclear e sh magnetic resonance (NMR) accessing unprecedented information about ubli molecular structure. Cross-relaxation rates depend on a single relaxation P mechanism (generally the interaction between the magnetic moments associated with the two considered spins). By contrast, cross-correlation ratesdependontwodifferentmechanismsand,althoughactinginthesame wayas cross-relaxation rates, may couplequantitiesthat are not necessarily polarizations. Cross-correlation, discovered shortly after cross-relaxation, wasconsideredforsometimeasascientificcuriosity.Itthenappearedthat cross-correlation rates can provide invaluable dynamical and structural information. Relevanttheoretical and experimental developments followed, eventuallyleadingtoline-narrowingphenomenathatproveddecisiveforthe NMR observation of larger and larger biomolecules. This book is divided into four chapters. The first chapter, by nature introductive, is an overview of nuclear spin relaxation with an emphasis on NewDevelopmentsinNMRNo.12 Cross-relaxationandCross-correlationParametersinNMR:MolecularApproaches EditedbyDanielCanet rTheRoyalSocietyofChemistry2018 PublishedbytheRoyalSocietyofChemistry,www.rsc.org v View Online vi Preface cross-relaxation and cross-correlation. The next two chapters are devoted to cross-relaxation and cross-correlation in small or medium-size molecules, chapter two in homonuclear systems and chapter three in heteronuclear systems. The final chapter (Chapter 4) deals with the important impact of 5 cross-relaxationandcross-correlationinbiologicalsystems.Wehopetohave 0 P0 covered all theoretical, conceptual and experimental aspects of this still F 5- growing topic. Many examples illustrate its considerable possibilities. In 7 24 addition, the reader will find different theoretical approaches (leading 2 26 nevertheless to the same results), corresponding to the sensitivity of each 8 17 author; this should be helpful for fully understanding the rich literature on 8 97 this subject. 9/ 3 0 1 0. Daniel Canet 1 oi: d g | or c. s s.r b u p p:// htt n o 7 1 0 2 er b o ct O 9 0 n o d e h s bli u P 7 0 0 P F 75- Contents 4 2 2 6 2 8 7 1 8 7 9 9/ 03 Chapter 1 Introduction to Nuclear Spin Cross-relaxation and 1 10. Cross-correlation Phenomena in Liquids 1 doi: Daniel Canet g | or c. 1.1 A Survey of Nuclear Spin Relaxation Mechanisms s bs.r and the Concept of Spectral Densities 2 u p p:// 1.1.1 InteractionwithLocalRandomlyFluctuating htt Magnetic Fields 3 n o 1.1.2 Dipolar Interactions 6 7 01 1.1.3 Chemical Shift Anisotropy (CSA) 8 2 er 1.1.4 The Spin-rotation Relaxation Mechanism 9 b o ct 1.1.5 Correlated Mechanisms 10 O 9 1.2 An Introduction to Spin 1/2 Quantum Mechanics 11 0 on 1.2.1 Operators for a Single Spin 1/2 11 d he 1.2.2 Product-operators for a System Involving s bli Several Spins 1/2 15 u P 1.2.3 Product-operators for a Two Spin 1/2 System and Relevant Spin States 16 1.2.4 The Density-matrix and the Density-operator 20 1.3 Evolution Equations 23 1.3.1 The Interaction Representation 23 1.3.2 Solving the Density-operator Evolution Equation within the Bloch–Wangsness–Redfield Theory 24 1.3.3 EvolutionEquationsofQuantitiesAssociated with Product-operators 26 NewDevelopmentsinNMRNo.12 Cross-relaxationandCross-correlationParametersinNMR:MolecularApproaches EditedbyDanielCanet rTheRoyalSocietyofChemistry2018 PublishedbytheRoyalSocietyofChemistry,www.rsc.org vii View Online viii Contents 1.4 Spin Relaxation in a Single Spin 1/2 System 28 1.4.1 Relaxation by Random Fields 28 1.4.2 Relaxation by Chemical Shift Anisotropy (CSA) 29 07 1.5 Spin Relaxation in a Two Spin 1/2 System Involving 0 FP Dipolar Interaction 32 5- 7 1.5.1 The Dipolar Relaxation Hamiltonian 32 4 2 62 1.5.2 Longitudinal and Transverse 2 78 Auto-relaxation Rates Including the Dipolar 1 8 7 Contribution 34 9 39/ 1.5.3 Cross-relaxation Rates 36 0 0.1 1.5.4 Cross-correlation Rates 37 1 oi: 1.6 TheFundamentalRelaxationEquationsintheCase d g | of a Two-spin 1/2 System 41 c.or 1.6.1 TheNuclearOverhauserEffect(nOe)andthe s s.r Simple Solomon Equations 41 b u p 1.6.2 The Extended Solomon Equations 45 http:// 1.6.3 The Goldman Equations 47 on 1.7 Multi-spin Systems. Occurrence of Dipolar–Dipolar 7 1 Cross-correlation Rates 48 0 2 er 1.7.1 Longitudinal Relaxation 49 b cto 1.7.2 Transverse Relaxation 52 O 9 1.8 Conclusion 57 0 n References 57 o d e h s bli u P Chapter 2 Homonuclear Cross-relaxation and Cross-correlation in Small Molecules and in Soft Matter 61 Kavita Dorai 2.1 Introduction 61 2.2 One-dimensional Cross-relaxation Experiments in Homonuclear Systems 62 2.2.1 Steady-state Nuclear Overhauser Enhancement 62 2.2.2 Transient NOE Experiments 63 2.2.3 2D Cross-relaxation Experiments in Homonuclear Systems 71 2.2.4 Distance Measurements from NOE Experiments 77 2.2.5 Selected Examples of the Usefulness of Cross-relaxation 80 View Online Contents ix 2.3 Experiments to Measure Cross-correlated Relaxation Rates 94 2.3.1 Experimental Observation of Longitudinal Cross-correlations 94 07 2.3.2 Experimental Observation of Transverse 0 FP Cross-correlations 105 5- 7 2.3.3 Cross-correlations Under Spin-lock 4 2 62 Conditions 112 2 78 2.3.4 Experimental Dynamic Frequency Shifts 116 1 8 7 2.3.5 Cross-correlations in Paramagnetic and 9 39/ Quadrupolar Systems 121 0 0.1 2.4 Motional Models and Cross-correlated Spin 1 oi: Relaxation 125 d g | 2.4.1 Spectral Densities for Different Types of c.or Motion 125 s s.r 2.4.2 Interpretation of Cross-correlation Motional b u p Parameters 134 http:// 2.5 Molecular Information from Cross-Correlated Spin on Relaxation 135 7 1 2.5.1 Structural Parameters from 0 2 er Cross-correlations 135 b cto 2.5.2 Estimating the CSA Tensor 136 O 9 2.5.3 Information about Carbohydrates and 0 n Nucleotides from Cross-correlations 137 o d e 2.5.4 Information about Small Ligand h s bli Conformations from Binding Studies using u P Cross-correlations 140 2.5.5 Motional Information from Cross-correlation Rates 145 2.6 Conclusions 148 Acknowledgements 149 References 149 Chapter 3 Heteronuclear Cross-relaxation 166 Bernard Ancian 3.1 Introduction and Basic Concepts 166 3.2 The Heteronuclear Overhauser Effect (HOE) 170 3.3 HOE’s Measurements and the Information they Provide 174 3.4 2D Heteronuclear Overhauser Spectroscopy (HOESY) 179 View Online x Contents 3.5 The 1D HOESY Experiment 187 3.6 An Improved HOESY Experiment: The P.HOESY Sequence 188 3.7 Inverse HOESY Experiments 190 07 3.8 Filtered-HOESY Experiments 192 0 FP 3.9 1D HOE and 2D HOESY in Intermolecular 5- 7 Interactions 193 4 2 62 3.10 Using Intermolecular HOESY in Chemistry and 2 78 Biology 198 1 8 7 3.10.1 Chemical Structure, Reactivity and Chiral 9 39/ Recognition 198 0 0.1 3.10.2 Solute–Solvent Interactions 200 1 oi: 3.10.3 Ion Pairs and Ionic Liquids 206 d g | 3.10.4 Metallic Bonds and Aggregates 214 c.or 3.10.5 Biology 217 s s.r 3.11 Conclusion 220 b u p Acknowledgements 221 http:// References 221 n o 7 1 0 2 er Chapter 4 Cross-correlation in Biomolecules 239 b cto Fabien Ferrage and Kavita Dorai O 9 0 n 4.1 Introduction 239 o ed 4.1.1 Definitions 240 h s bli 4.1.2 Span of Uses 240 u P 4.1.3 Presentation of This Chapter 241 4.2 Theory 241 4.2.1 The Homogeneous Master Equation 241 4.2.2 Frame Transformations of Liouvillian Superoperators 243 4.2.3 Average Liouvillian Theory: Discrete Averaging 244 4.2.4 ApplicationofDiscreteALT:Measurementof CSA/DD CCCR Rates 246 4.2.5 Average Liouvillian Theory: Continuous Averaging 246 4.2.6 Application of Continuous ALT: Measurement of CSA/DD CCCR Rates 248 4.2.7 Note on the Secular Approximation 249 4.3 Measurements of Cross-relaxation at the Steady-state Effects 249

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