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Chemical Modelling: Applications and Theory, Volume 10 PDF

238 Pages·2013·26.644 MB·English
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Chemical Modelling Applications and Theory Volume 10 1 0 0 P F 1- 4 2 7 3 7 9 4 8 1 8 7 9 9/ 3 0 1 0. 1 oi: d g | or c. s s.r b u p p:// htt n o 3 1 0 2 er b o ct O 0 . n 3 o d e h s bli u P View Online 1 0 0 P F 1- 4 2 7 3 7 9 4 8 1 8 7 9 9/ 3 0 1 0. 1 oi: d g | or c. s s.r b u p p:// htt n o 3 1 0 2 er b o ct O 0 . n 3 o d e h s bli u P View Online A Specialist Periodical Report Chemical Modelling Applications and Theory 1 0 P0 Volume 10 F 1- 4 2 7 3 7 9 4 8 1 8 A Review of Recent Literature 7 9 9/ 3 0 1 0. 1 oi: Editors d g | J-O Joswig, Technische Universita¨t, Dresden, Germany or M. Springborg, University of Saarland, Saarbru¨cken, Germany c. s s.r b u http://p AHuetithoorrsAvelino de Abreu, Universidade Federal de Minas Gerais, n Belo Horizonte-MG, Brazil o 13 Victor S. Batista, Yale University, Connecticut, USA 0 er 2 Jason Bedford, Yale University, Connecticut, USA ob He´lio Anderson Duarte, Universidade Federal de Minas Gerais, Belo ct O Horizonte-MG, Brazil 0 . n 3 Guilherme Ferreira de Lima, Universidade Federal de Minas Gerais, d o Belo Horizonte-MG, Brazil e h Diego A. Ho, Universidade Federal de Santa Catarina, Brazil s bli Andreas Ko¨hn, Johannes Gutenberg-Universitat Mainz, Germany u P Mathias Rapacioli, Universite´Paul Sabatier, Toulouse, France Luis G. C. Rego, Universidade Federal de Santa Catarina, Brazil Rex T. Skodje, University of Colorado, Boulder, USA Ingolf Warnke, Yale University, Connecticut, USA Dequan Xiao, Yale University, Connecticut, USA Sergei N. Yurchenko, University College London, London, UK View Online Ifyoubuythistitleonstandingorder,youwillbegivenFREEaccess to the chapters online. Please contact [email protected] with proof of purchase to arrange access to be set up. Thank you. 1 0 0 P F 1- 4 2 7 3 7 9 4 8 1 8 ISBN: 978-1-84973-586-5 7 9 9/ ISSN: 0584-8555 3 0 DOI: 10.1039/9781849737241 1 0. 1 doi: A catalogue record for this book is available from the British Library g | or c. & The Royal Society of Chemistry 2014 s s.r b u p://p All rights reserved htt n Apart from fair dealing for the purposes of research or private study for o 13 non-commercial purposes, or for private study, criticism or review, as 0 er 2 permitted under the Copyright, Designs and Patents Act, 1988 and the ob Copyrightand RelatedRightsRegulations2003,thispublicationmaynotbe ct O reproduced, stored or transmitted, in any form or by any means, without the 0 . n 3 priorpermission inwriting ofThe RoyalSocietyofChemistry, orinthecase d o of reproduction in accordance with the terms of the licences issued by the e h CopyrightLicensingAgencyintheUK,orinaccordancewiththetermsofthe s bli licences issued by the appropriate Reproduction Rights Organization outside u P the UK. Enquiries concerning reproduction outside the terms stated here shouldbesenttoTheRoyalSocietyofChemistryattheaddressprintedonthis page. Published by The Royal Society of Chemistry, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK Registered Charity Number 207890 For further information see our web site at www.rsc.org Preface Michael Springborga and Jan-Ole Joswigb DOI: 10.1039/9781849737241-FP005 This is the 10th volume of the Specialist Periodical Reports on Chemical Modelling: Applications and Theory, another anniversary to be celebrated. 5 0 0 Asyouwillnotice,thisvolumehasanenlargededitorialteam:we,Michael P F 1- SpringborgandJan-OleJoswig,arenoweditingwithjointforcesandhope 4 2 to keep you, the reader, interested in the reviews from various areas of 7 3 7 chemical modelling. As in the past years, we continue the annually 9 4 8 appearance of the series. 1 8 7 The author list of the present issue brings together scientists from two 9 39/ continents, namely Europe and America. You will find two contributions 0 0.1 each from Brazil and the United States, and one contribution each from 1 oi: Germany, France, and the United Kingdom. We hope to show with the g | d distribution of authors that SPR Chemical Modelling is a truly global or project. c. s.rs Volume 10 presentsa composition of methodological reports on the one ub side and more applied theoretical works on the other side. Some of them p p:// even combine these two directions. We start with a review on inverse htt molecular design, a global-optimization approach for the discovery of new n o materials. On the other hand, we find reviews that deal with modelling the 3 01 small scale, as, e.g., electron correlation and quantum dynamics. Besides 2 er these issues, the present volume contains papers on modelling reactive b cto intermediates, polycyclic hydrocarbons, sulphide minerals, and dipole O 0 moments. . n 3 Weverymuchhopethatwewereabletocollectinterestingandsignificant o d topics that now are united in the present volume. Forthcoming issues of e h blis SPR Chemical Modelling are planned already, and we will be grateful for Pu helpful suggestions with respect to authors or subjects. For now, we wish you enjoyment with Volume 10. aPhysicalandTheoreticalChemistry,UniversityofSaarland,66123,Saarbru¨ckenGermany. E-mail:[email protected] bPhysikalischeChemie,TechnischeUniversita¨tDresden,D-01062DresdenGermany. E-mail:[email protected] Chem. Modell., 2013, 10, v–v | v (cid:2)c TheRoyalSocietyofChemistry2014 View Online 5 0 0 P F 1- 4 2 7 3 7 9 4 8 1 8 7 9 9/ 3 0 1 0. 1 oi: d g | or c. s s.r b u p p:// htt n o 3 1 0 2 er b o ct O 0 . n 3 o d e h s bli u P CONTENTS Cover Theicosahedral‘goldenfullerene’ WAu reproducedbypermissionof 12 PekkaPyykko¨,ChemistryDepartment, 7 UniversityofHelsinki,Finland. 0 0 P F 1- 4 2 7 3 7 9 4 8 1 8 7 9 9/ 3 0 1 0. 1 oi: d g | or c. s s.r b u p p:// Preface v htt Michael Springborg and Jan-Ole Joswig n o 3 1 0 2 er b o ct O 0 Inverse molecular design for materials discovery 1 . on 3 Dequan Xiao, Ingolf Warnke, Jason Bedford and Victor S. Batista d he 1 Introduction 1 s bli 2 Strategies in inverse molecular design 2 u P 3 Recent applications 14 4 Conclusions 27 References 28 Complete basis set results in electron correlation methods using F12 32 theory Andreas Ko¨hn 1 Scope of F12 theory 32 2 Electron-electron cusp conditions 33 3 Main elements of F12 theory 36 4 Applications of F12 theory 52 5 Current frontiers in F12 theory 57 6 Final remarks 59 References 60 Chem. Modell., 2013, 10, vii–ix | vii (cid:2)c TheRoyalSocietyofChemistry2014 View Online Reactive intermediates with large amplitude degrees of freedom 64 Rex T. Skodje 1. Introduction 64 2. Pre-reactive and post-reactive van der Waals molecules 65 3. Torsional motion in complexes and transition states 82 4. Conclusion 98 Acknowledgements 99 7 00 References 99 P F 1- 4 2 7 3 7 9 4 8 1 8 Modelling electron quantum dynamics in large molecular systems 102 7 9 9/ Diego A. Hoff and Luis G. C. Rego 3 0 0.1 1 Introduction 102 1 oi: 2 Semiempirical molecular orbital theory 104 d g | 3 Quantum dynamics methods 105 or 4 Tight-binding quantum chemical hamiltonian 106 c. s.rs 5 Time propagation of electronic wavepackets in dynamic 110 b u tight-binding models p p:// 6 Parametrisation 118 htt 7 Conclusions 123 n 3 o Acknowledgments 123 1 0 References 123 2 er b o ct O 0 . n 3 o d Modelling polycyclic aromatic hydrocarbons and their derivatives 127 e h blis Mathias Rapacioli u P 1 Polycyclic aromatic hydrocarbons 127 2 Electronic description 129 3 Properties of isolated molecules 133 4 Growth of PAH 135 5 Reactivity and chemical role of PAH 136 6 PAH clusters 138 7 PAH complexes 143 8 Conclusion 145 References 146 Surface reactivity of the sulfide minerals 153 Guilherme Ferreira de Lima, Heitor Avelino de Abreu and He´lio Anderson Duarte 1 Mineral sulfides 153 2 Computational approach 157 viii | Chem. Modell., 2013, 10, vii–ix View Online 3 Acid mine drainage 163 4 Chalcopyrite leaching 170 5 Final remarks 177 Acknowledgments 178 References 178 7 0 0 P F 1- Electric dipole moments of small polyatomic molecules from 183 4 2 7 first principles 3 7 49 Sergei N. Yurchenko 8 1 8 1 Introduction 183 7 9 9/ 2 Theory: electric dipole intensities of polyatomic molecules 184 3 10 3 Triatomic molecules 185 0. 1 4 Tetratomic molecules 199 oi: d 5 Pentatomics 217 org | 6 Conclusion 222 sc. 7 ab initio methods 223 bs.r Acknowledgment 223 u p://p References 223 htt n o 3 1 0 2 er b o ct O 0 . n 3 o d e h s bli u P Chem. Modell., 2013, 10, vii–ix | ix View Online 7 0 0 P F 1- 4 2 7 3 7 9 4 8 1 8 7 9 9/ 3 0 1 0. 1 oi: d g | or c. s s.r b u p p:// htt n o 3 1 0 2 er b o ct O 0 . n 3 o d e h s bli u P

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