Studies on Bacillus Species metabolites and their bactericidal effect against Staphylococcus species BY Maha Mustafa Ahmed Mohammed B.SC. (F. of science and Technology ) ElNEElAIN UNIVERSTY (2002) Supervisor: Professor : Suliman M .EISanousi A thesis submitted to the University of Khartoum in partial fulfillment of the requirements of master Degree of in Microbiology Department of Microbiology Faculty of Veterinary Medicine University of Khartoum (2007) PREFACE This work described in this thesis was carried out in the Department of Microbiology, Faculty of Veterinary Medicine University, of Khartoum under supervisition of Prof .Suliman Mohamed Elsanousi i Dedication This thesis is dedicated to my father, who taught me that the best kind of knowledge to have is that which is learned for its own sake. It is also dedicated to my mother, who taught me that even the largest task can be accomplished if it is done one step at a time. It is also dedicated to my brother , Your friendship is a treasure beyond compare It is also dedicated to my beloved husband Ahmed None of this would be possible without your love and support ii Acknowledgment I would like to express my sincere thanks and gratitude to my supervisor professor Suliman Mohammed Elsanousi for his Advice, interest, Leadership, and paitient guidance. Thanks also extended to the staff of the Department of microbiology including head department, Technicians for their cooperation and assistant iii LIST OF CONTENTS No. Title Page Title……………………………………………. i. Preface………………………………………………………. ii. Dedication……………………………………………………. iii. Acknowledgment……………………………………………………… iv. Abstract…………………………………………………. v. Objectives………………………………………………………….. vi. ةحورطلاا صخلم …………………………………………………….. vii. Table of contents ………………………………………………….. viii. List of tables………………………………………………………… ix. List of figures……………………………………………………… x. Introduction………………………………………………………… xi. Chapter one Literature review ……………………………………. 1 1.1 Genus Bacillus…………………………………………………….. 1 1.1.2 Classification and identification of the genus Bacillus ……………. 2 1.13 Habitat …………………………………………………………… 3 1.1.4 Morphological and cultural characteristic…………………………. 3 1.1.5 Pathogenicity ……………………………………………………… 4 1.1.6 Bacteriocin production……………………………………………. 4 1.1.7 Bacteriocin Classification ……………………………………….. 5 1.1.8 Mechanism of bacteriocin action…………………………………... 6 1.19 Bacteriocingenic species…………………………………………… 9 1.2 Staphylococcus………………………………………………...…… 10 1.2.1 General characteristic of Staphylococcus…………………………. 10 1.2.2 History and taxonomy and classification of Staphylococcus………. 10 1.2.3 Morphology of Staphylococcus ……………………………………. 12 1.2.4 Growth and cultural characteristic of Staphylococcus ………….. 12 1.2.5 Staphylococcus infection …………………………………………. 15 1.2.6 Staphylococcus aurues …………………………………………………. 16 1.2.7 Staphylococcus epidermidis ………………………………………………. 17 1.2.8 Staphylococcus saprophyticus …………………………………………. 18 1.2.9 Closer look at vancomycin resistance …………………………… 18 1.3 Antimicrobial chemotherapy ……………………………………… 20 1.3.1 Spectrum of action of antimicrobial drugs ……………………….. 20 1.3.1.1 Classification of microorganism…………………………………. 21 1.3.1.2 Antibacterial activity ……………………………………………… 21 1.3.1.3 Effect of antimicrobial Bactericidal or bacteriostatic 21 1.3.2 Mechanism of action of antimicrobial drugs………………………. 21 iv 2 Chapter two Material and method ………………………………… 23 2.1 Organisms …………………………………………………………. 23 2.2 Equipment …………………………………………………………. 24 2.3 Media………………………………………………………………. 24 2.3.1 Nutrient Broth …………………………………………………… 24 2.3.2 Nutrientagar 24 2.3.3 Blood agar 24 2.3.4 Indol medium ……………………………………………………. 24 2.3.5 Voges -Proskauer V.P test 25 2.3.6 Casein agar medium ……………………………………………….. 25 2.3.7 Starch Medium………………………………………………………. 25 2.3.8 Gelatin agar medium………………………………………............. 26 2.3.9 Citrate media………………………………………………........... 26 2.3.10 Ammonium salt agar……………………………………………… 26 2.3.11 Motility medium…………………………………………………… 27 2.3.12 Hugh and leifson (O.\F)medium………… ………..................... 27 2.3.13 Nitrate broth………………………………………………………... 28 2.4 Buffers……………………………………………………………… 28 2.4.1 Normal Saline………………………………………………............ 28 2.4.2 Distilled Water…………………………..…………………………. 28 2.5 Tests reagents……………………………………………………… 28 2.5.1 Hydrogen peroxide………………………………………….......... 28 2.5.2 Nitrate test reagent…………………………………………………. 28 2.5.3 Neutral red………………………………………………………… 28 2.5.4 Kovac's reagent……………………………………………………. 29 2.5.5 Methyl red………………………………………………………….. 29 2.5.6 Bromocresol purple…………………………..……………………. 29 2.5.7 polyethylene glycol………………………………………………… 29 2.5.8 Xylene……………………………………………………………… 28 2.5.9 Hydrochloric acid………………………………………………….. 29 2.5.10 Oxidase test reagent …………………………….. ………………… 30 2.5.11 Andrads indicator test reagent………………………………………. 30 2.6 Stains……………………………………………………………….. 30 2.6.1 Gram Stain…………………………………………………………. 30 2.7 Selection of Bacillus spp which produce metabolite against 30 Staphylococcus spp …….. 2.7.1 Preparation of metabolite……………………………………………. 30 2.8 Methods for detection the inhibitory effect of Bacillus spp on 31 Staphylococcus spp……………………………………………….. v 2.8.1 Disc Method………………………………………………………... 31 2.8.2 Scraping Method…………………………………………………… 31 2.8.3 Strip method……………………..………………………………… 31 2.9 Determination of inhibitory activity unit of metabolite in filtrate . 32 2.10 Determination the bacteriosataic and bactericidal activity of 32 metabolite filtrate…………………………………………………. 2.11 Thermostability of metabolite filtrate…………………………….. 32 2.12 Solubility of metabolite filtrate in methanol………… 32 2.13 Stability of metabolite filtrate against enzymes ………………….. 33 3 Chapter Three Result……………………………………………….. 34 3.1 Screening of Bacillus spp for their production of metabolite activity 34 against Staphylococcus…………………………………….. 3.2 Determination of inhibitory activity unit……………………........... 34 3.4 Determination the bacteriostatic and bactericidal activity of 35 metabolite filtrate………………………………………………… 3.5 Thermostability result………………………………………………. 35 3.6 Solubility of metabolite filtrate in methanol……………………… 35 3.7 Stability of metabolite filtrate against enzymes…………………... 35 4 Chapter four Discussion…………………………………………… 41 5 References…………………………………………………………. 43 vi Abstract The present study was carried out to isolate and identify the different type of Bacillus ssp from different sources.And to tested their metabolites as bactericidal to Staphylococci Thirty two Gram positive bacilli were isolated from different sources. The main source was contaminants in bacteriological cultures. The isolates were screened for their production of metabolites against Staphylococcus (Staphylococcus aureus, Staphylococcus epidermidis and Staphylococcus saprophytycus). Three of these isolates were positive for production of metabolites that completely inhibited Staphylococcus growth .The three positive isolates were Bacillus cereus, Bacillus lichniformis and Bacillus subtilis The metabolites were isolated and partially purified from these species in order to study their chemical and physical properties. The result of chemical and physical properties of the active metabolites filtrates revealed the presence of an extracellular thermosensetive (the metabolite degrading by high temperature ) ,but these metabolites could be kept at room temperature for long time . In order to establish the inhibitory activity unit different metabolite filtrates dilutions were tested against Staphylococcus spp. The inhibitory activity unit which is higher dilution of metabolite filtrate that inhibits in vitro the Staphylococcus growth Was 1x10-1 vii From plate assay to establish the bacteriostatic or bactericidal activity of metabolite filtrate, the result revealed that the metabolites have bactericidal effect against staphylococcus spp. The metabolite filtrate stability test against enzymes revealed that the metabolite filtrates were denatured by protease enzyme viii ىيحشنا ًٍحشنا الله ىغب تحٔشطلأا صخهي سداصي ٍي ،واشج تغبصن ّبجًٕنا تيهيعابنا ثايصعنا ٍي ٌٕثلاثٔ ٌاُثإ لضع ىت ثايصعنا ِزْ ٍي تثلاث .تيجٕنٕيشتكابنا عساضًنا ٌاك سداصًنا ةزْ ىْأ ،تفهتخي تيدٕقُعنا ثاسٕكًنا عإَأ ضعب ًَٕ طابحإ يهع ةسذقًنا آن ٌاك ّنٔضعًنا تيهيعابنا تيششبنا ثاسٕكًنأ تيبْزنا تيدٕقُعنا ثاسٕكًناك يْ تيدٕقُعنا ثاسٕكًنا ًَٕ طابحإ يهع ةسذقنا آن ٌاك يتنا تيهيعابنا ثايصعنا دإًنا ِزْ لضع ىت ىث ظيسٕفيُشين ظهيعابنأ ظهتبع يهيعابنأ طشيع ظهيعابنا ضعب تعاسذن ةسٕكضًنا تيهيعابنا ثايصعنا ٍي تيهيعابنا ثايصعنا اْصشفت يتنا يفٔ ءاًنا يف تبئار يْ دإًنا ِزْ ٌأ ٍيبتٔ .تيئايضيفنأ تيئايًيكنا آصإخ ىيضَا ٌأ اًك ايشتكبهن متاق شيثأت آن ٌأ ًاضيأ ٍيبتٔ ِساشحهن تعاغح آَأ اًك لَٕاثيًنا .دإًنا ِزْ ميهحتٔ كيكفَ يهع مًعي K ضيُيتٔشب ix
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