The Journal of General and Applied Microbiology 2008: Index & Table of Contents

2008·1.6 MB·English

KEY WORDS INDEX
(Vol. 54)
A cross-infection 195 H
Cutrobacterium luteum 385
acetic acid bacteria 119, 211 hat-shaped ascospores
Acetobacteraceae 167 D Heterokonta
acidic conditions 221 homospermidine
acne 101 dawadawa 159
Actinomadura maheshkhaliensis sp. decolorization 399
nov. degrading bacteria 61 immobilization
Actinomycetes dental clinics 195 immunomodulatory activity
activated sludge desiccation tolerance 243 interactions
Agrobacterium tumefaciens DGGE 83, 149 interleukin-8
air-borne microbes distribution 71 intestinal microflora
alginate DNA-DNA hybridization 51, 327 introduced Pseudomonas
alkylphenols dugong 25 Issatchenkia orientalis
Alphaproteobacteria E iturin
ambrosia beetle
ambrosia fungi eelgrass 25 K
Anoxybacillus endocrine disrupter chemicals kraft lignin
antagonistic activity endophytic bacteria 83
i.
antibiotic resistance enterococci 39
antimicrobial activity entodiniomorphid ciliate protozoa lactic acid bacteria 51
arsenic 409 Lactobacillus paracasei 267
Aspergillus oryzae Escherichia coli 39 Lactobacillus rhamnosus 141
Aspergillus sp. Escravos light crude oil 277 lactose 285
automated spectrophotometry Euglenozoa 135 large subunit ribosomal DNA
axenic express 393 sequence 181
extracellular polysaccharide 9, 243 legumes 93
lipid 327
Bacillus F lipopolysaccharide 9
Bacillus sp. fasciclin 243 luciferase (LUC) 367
bacteria fatty acid profiling 205 LZ-8 protein 393
bacteriocin fecal microbiota 25 M
Bacteroidetes
fermented locust beans 159
beaches of Brazil flaB 71 maize rhizosphere 205
biodegradation marine herbivore 25
flaC 71
biomass marine soil 127
freeze-drying 9
bioremediation metalloprotease 385
Fusarium oxysporum f. sp. cubense
biosurfactant Metamonada 135
Botryis cinerea methylotrophic yeast 353
G microalgae 187
Cc
microbial community 205
galactooligosaccharide
Candida kanchanaburiensis sp. micrococcal nuclease 317
B-galactosidase
nov. Micromonospora krabiensis 127
Gangotri glacier
cellulase Micromonosporaceae 127
cellulosic ethanol GC-MS mitochondrial nucleoids ate
Cercozoa Geotrichum candidum mixed cultures 1,277
chimpanzee Gluconobacter roseus sp. nov., monomeric red fluorescent protein
Chlorella nom. rev. (mRFP) 367
chromate-resistant fungi Gluconobacter sphaericus comb.
N
cold-active enzymes nov.
coliform reservoir B-glucuronidase (GUS) new anamorphic yeast 259
colonization green fluorescent protein (GFP) new yeast from Thailand 259
cosmetics B-glucosidase new yeast species 181
Cr (VI) removal growth profile nodulation 93
418
nonculturable bacteria 187 Propionibacterium acnes survival Curve
novel capsule-forming yeast 377 Pseudomonas 61 symbiosis island
novel insect-associated yeast 377 Pseudomonas japonica sp.nov. 61 symbiotic plasmid
novel methylotrophic yeast 377 pulp paper mill waste T
NUC1 nuclease 317 pulsed-field gel electrophoresis
pattern 39 taxonomy
Oo
tcpA
Q
Oceanobacillus iheyensis 305 teichoic acid
Ogataea corticis sp. nov. 353 Qula cheese 51 termite
Ogataea neopini sp. nov. 353 thermophile
R
Ogataea paradorogensis sp. nov. 377 thermophilic bacteria
oil-contaminated soils restriction analysis WAG 2H toxS
oleic acid Rhizobium leguminosarum bv. trifolii transposon
oral administration 107 Trichoderma virens
OxiTop* Rhizobium sp. 93 Troglodytella abrassarti
Roseomonas stagni sp. nov. 167 tumor necrosis factor-o
rPOB and fus sequences 159
U
Paenibacillus sp.
S
pathogenic species uncultured bacteria
PCR 16S rDNA sequences 159
Vv
Penicillium camembertii 16S rDNA sequencing 335
Penicillium sp. 16S rRNA analysis 327 versatile vectors
peptones 16S rRNA gene 149, 399 viability
phylogeny 16S rRNA gene sequence 51, 305 Vibrio harveyi
Pichia pastoris 16S-23S rDNA ITS sequences 119 virulence-related genes
Pichia rarassimilans 16S-23S rRNA gene ITS sequences
WwW
pink-pigment 2
plant growth-promoting rhizobacte- Saccharomyces boulardii 221 water quality
ria 149 Saccharomyces cerevisiae 317 WspA
Platypus quercivorus 181 Schumannella luteola gen. nov., sp.
pLOB1 367 nov. 253
polluted soils 295 settle plates 195 xylene
polyamine 135, 229 soil 187
y-polyglutamic acid 159 soil fertilizer 149
polyphasic taxonomy 335 spermidine 229 yak milk
pOT 367 spore germination 311 yeast
premature polyadenylation 343 Sporobolomyces singularis 285 yeast extracts
proB and fus sequences 159 Staphylococcus epidermidis 101
probiotic 141 stream sediment 173
probiotics 267 substrate consumption 1
VOLUME 54
THE JOURNAL OF GENERAL
AND
APPLIED MICROBIOLOGY
EXECUTIVE EDITORS:
KOJI YODA (Chief) HIDEHARU ANAZAWA KATSUHIKO KITAMOTO
YASUJI KOYAMA SHINICH] MATSUYAMA KENICHI NISHIYAMA
AKINORI OHTA KAN TANAKA YOSHINORI WATANABE
AKIRA YOKOTA
EDITORIAL BOARD MEMBERS:
ROY H. DOI NOBUYUKI FUJITA KENSUKE FURUKAWA
AKIRA HIRAISHI SUEHARU HORINOUCHI YASUO IGARASHI
YOICHI KAMAGATA YOKO KATAYAMA FUJIO KAWAMURA
HIROSHI KOBAYASHI KAZUHIRO KOGURE HISAYUKI Wil: SUI
KAORU NAKASONE HIDEAKI NOJIRI HISAYOSHI NOZAKI
MASAYUKI OHMORI HIROYUKI OSADA KEISHI SENOO
MAKOTO SHIRAI
ADVISORY BOARD MEMBERS:
KO AIDA YONOSUKE IKEDA BUNJI MARUO
HIUGA SAITO TOMOMICHI YANAGITA
Volume 54
February 2008—December 2008
PUBLISHED by
THE MICROBIOLOGY RESEARCH FOUNDATION

THE JOURNAL OF GENERAL AND
APPLIED MICROBIOLOGY
VOLUME 54 2008
CONTENTS
VOLUME 54 FEBRUARY 2008 NUMBER 1
Full Papers
Competition during submerged mixed culture of Geotrichum candidum and Penicillium
camembertii on glucose and threonine
by M. Aziza and A. Amrane
Survival of freeze-dried bactreria
by Y. Miyamoto-Shinohara, !. Sukenobe, T. Imaizumi, and T. Nakahara
Fecal microbiota of a dugong (Dugong dugong) in captivity at Toba Aquarium
by E. Tsukinowa, S. Karita, S. Asano, Y. Wakai, Y. Oka, M. Furuta, and M. Goto
Comparison of pulsed-field gel electrophoresis patterns of antimicrobial-resistant Escherichia
coli and enterococci isolates from the feces of livestock and livestock farmers in Japan
by Y. Katsunuma, M. Hanazumi, H. Fujisaki, H. Minato, Y. Kataoka, T. Sawada,
Y. Hashimoto, and C. Yonemochi
Identification and characterization of lactic acid bacteria isolated from Tibetan Qula cheese
by Y. Duan, Z. Tan, Y. Wang, Z. Li, Z. Li, G. Qin, ¥. Huo, and Y. Cai
Pseudomonas japonica sp. nov., a novel species that assimilates straight chain alkylphenols
by W. Pungrasmi, H.-S. Lee, A. Yokota, and A. Ohta
Short Communications
Distribution of five vibrio virulence-related genes among Vibrio harveyi isolates
by F. Bai, L. Pang, Z. Qi, J. Chen, B. Austin, and X.-H. Zhang
Purification and characterization of a biosurfactant produced by /ssatchenkia orientalis SR4
by W. Katemai, S. Maneerat, F. Kawai, H. Kanzaki, T. Nitoda, and A. H-Kittikun
VOLUME 54 APRIL 2008 NUMBER 2
Full Papers
Response of endophytic bacterial communities in banana tissue culture plantlets to
Fusarium wilt pathogen infection
by J. Lian, Z. Wang, and S. Zhou
Characterization of a symbiotically effective Rhizobium resistant to arsenic: Isolated from
the root nodules of Vigna mungo (L.) Hepper grown in an arsenic-contaminated field
by S.M. Mandal, B.R. Pati, A.K. Das, and A.K. Ghosh
Antibacterial and anti-inflammatory effects of Jeju medicinal plants against acne-inducing
bacteria
by S.-S. Kim, J.-Y. Kim, N.H. Lee, and C.-G. Hyun
Transposon mediation allows a symbiotic plasmid of Rhizobium leguminosarum bv. trifolii to
become a symbiosis island in Agrobacterium and Rhizobium
by H. Nakatsukasa, T. Uchiumi, K. Kucho, A. Suzuki, S. Higashi, and M. Abe
Short Communications
Gluconobacter roseus (ex Asai 1935) sp.nov., nom.rev., a pink-colored acetic acid bacterium in
the Alphaproteobacteria
by T. Malimas, P Yukphan, M.Takahashi, Y. Muramatsu, M. Kaneyasu, W. Potacharoen,
S. Tanasupawat, Y. Nakagawa, M. Tanticharoen, and Y. Yamada
Micromonospora krabiensis sp.nov., isolated from marine soil in Thailand
by S. Jongrungruangchok, S. Tanasupawat, and T. Kudo
Cellular polyamines of phototrophs and heterotrophs belonging to the lower eukaryotic phyla
Cercozoa, Euglenozoa, Heterokonta and Metamonada
by K. Hamana
VOLUME5 4 JUNE 2008 NUMBER 3
Full Papers
Lactobacillus rhamnosus L60, a potential probiotic isolated from the human vagina
by L.M. Pascual, M.B. Daniele, F. Ruiz, W. Giordano, C. Pajaro, and L. Barberis
Microbial analysis of a composted product of marine animal resources and isolation of
bacteria antagonistic to a plant pathogen from the compost
by C. Niisawa, S. Oka, H. Kodama, M. Hirai, Y. Kumagai, K. Mori, J. Matsumoto,
H. Miyamoto, and H. Miyamoto
Phylogeny of y-polyglutamic acid-producing Bacillus strains isolated from a
fermented locust bean product manufactured in West Africa
by J. Meerak, P Yukphan, M. Miyashita, H. Sato, Y. Nakagawa, and Y. Tahara
Short Communications
Roseomonas stagni sp. nov., isolated from pond water in Japan
by K. Furuhata, H. Miyamoto, K. Goto, Y. Kato, M. Hara, and M. Fukuyama
Sediment can be a reservoir for coliform bacteria released into streams
by J. Smith, J. Edwards, H. Hilger, and T.R. Steck
Pichia rarassimilans sp. nov., a novel yeast species isolated from body surface of
the ambrosia beetle Platypus quercivorus
by R. Endoh, M. Suzuki, and Y. Benno
VOLUME 54 AUGUST 2008 NUMBER 4
Full Papers
Presence of previously undescribed bacterial taxa in non-axenic Chlorella cultures
by S. Otsuka, Y. Abe, R. Fukui, M. Nishiyama, and K. Senoo
Air-borne microbial contamination of surfaces in a UK dental clinic
by V. Decraene, D. Ready, J. Pratten, and M. Wilson
Microbial community in the rhizosphere of young maize seedlings is susceptible to
the impact of introduced pseudomonads as indicated by FAME analysis
by J. Kozdrdj
Gluconobacter sphaericus (Ameyama 1975) comb. nov., a brown pigment-producing acetic
acid bacterium in the Alphaproteobacteria
by T. Malimas, P. Yukphan, M. Takahashi, Y. Muramatsu, M. Kaneyasu, W. Potacharoen,
S. Tanasupawat, Y. Nakagawa, M. Tanticharoen, and Y. Yamada
Influence of pH conditions on the viability of Saccharomyces boulardii yeast
by S. Graff, J.-C. Chaumeil, P Boy, R. Lai-Kuen, and C. Charrueau
Short Communications
Polyamine distribution profiles of new members of the phylum Bacteroidetes
by K. Hamana, T. Itoh, Y. Benno, and H. Hayashi
The growth and recovery of an exopolysaccharide-producing Lactobacillus rhamnosus
culture on growth media containing apple juice or molasses
by C.P Champagne and N.J. Gardner
VOLUME 54 OCTOBER 2008 NUMBER 5
Full Papers
Novel thermostable glycosidases in the extracellular matrix of the terrestrial cyanobacterium
Nostoc commune
by F.M. Morsy, S. Kuzuha, Y. Takani, and T. Sakamoto
Schumannella luteola gen. nov., sp. nov., a novel genus of the family Microbacteriaceae
by S.-Y. An, T. Xiao, and A. Yokota
Candida kanchanaburiensis sp.nov., a new ascomycetous yeast species related to Pichia
nakazawae isolated in Thailand
by T. Nakase, S. Jindamorakot, S. Ninomiya, Y. Imanishi, H. Kawasaki, and
W. Potacharoen
Evaluation of the probiotic potential of Lactobacillus paracasei KW3110 based on in vitro tests
and oral administration tests in healthy adults
by S. Nishida, A. Michinaka, K. Nakashima, H. lino, and T. Fujii
Escravos light crude oil degrading potentials of axenic and mixed bacterial cultures
by E.E.0. Odjadjare, S.O. Ajisebutu, E.O. Igbinosa, O.A. Aiyegoro,
M.R. Trejo-Hernandez, and A.|. Okoh
Repeated-batch production of galactooligosaccharides from lactose at high concentration
by using alginate-immobilized cells of Soorobolomyces singularis YIT 10047
by T. Sakai, H. Tsuji, S. Shibata, K. Hayakawa, and K. Matsumoto
Cr(VI) reduction from contaminated soils by Aspergillus sp. N2 and Penicillium sp.
N3 isolated from chromium deposits
by T. Fukuda, Y. Ishino, A. Ogawa, K. Tsutsumi, and H. Morita
Short Communications
Molecular detection of Oceanobacillus iheyensis in sand of Brazilian beaches
by N. Vaisman, |. von der Weid, F.F. da Mota, and L. Seldin
Growth evaluation of an antagonistic Trichoderma virens isolate by using a BOD OxiTop®
respirometric apparatus
by S. Sarrocco, F. Gambineri, L. Magneschi, G. Valentini, and G. Vannacci
VOLUME 54 DECEMBER 2008 NUMBER 6
Full Papers
Use of the nuc7 null mutant for analysis of yeast mitochondrial nucleoids
by |. Miyakawa, R. Fujimura, and Y. Kadowaki
Anoxybacillus kamchatkensis subsp. asaccharedens subsp. nov., a thermophilic bacterium
isolated from a hot spring in Batman
by R. Gul-Guven, K. Guven, A. Poli, and B. Nicolaus
Actinomadura maheshkhaliensis sp. nov., a novel actinomycete isolated from mangrove
rhizosphere soil of Maheshkhali, Bangladesh
by |. Ara, A. Matsumoto, M.A. Bakir, T. Kudo, S. Omura, and Y. Takahashi
Codon optimization prevents premature polyadenylation of heterologously-expressed
cellulases from termite-gut symbionts in Aspergillus oryzae
by S. Sasaguri, J. Maruyama, S. Moriya, T. Kudo, K. Kitamoto, and M. Arioka
Ogataea neopini sp. nov. and O. corticis sp. nov., with the emendation of
the ascomycete yeast genus Ogataea, and transfer of Pichia zsoltii, P dorogensis, and
P. trehaloabstinens to it
by Y. Nagatsuka, S. Saito, and J. Sugiyama
The pOT and pLOB vector systems: Improving ease of transgene expression in
Botrytis cinerea
by R. M. Patel, M.N. Heneghan, J.A.L. van Kan, A.M. Bailey, and G.D. Foster
Ogataea paradorogensis sp. nov., a novel methylotrophic ascomycetous yeast species
isolated from galleries of ambrosia beetles in Japan, with a close relation to
Pichia dorogensis
by T. Nakase, S. Ninomiya, Y. Imanishi, A. Nakagiri, H.K awasaki, and S. Limtong
A cold-active extracellular metalloprotease from Curtobacterium luteum (MTCC 7529):
Enzyme production and characterization
by M. Kuddus and P. W. Ramteke
Functional expression of LZ-8, a fungal immunomodulatory protein from Ganoderma
lucidium in Pichia pastoris
by Q. Xue, Y. Ding, C. Shang, C. Jiang, and M. Zhao
Isolation and characterization of bacterial strains Paenibacillus sp. and Bacillus sp. for
kraft lignin decolorization from pulp paper mill waste
by R. Chandra, S. Singh, M.M. Krishna Reddy, D.K. Patel, H.J. Purohit, and
Short Communication
Phylogenetic analysis of Troglodytella abrassarti isolated from Chimpanzees
(Pan troglodytes verus) in the wild and in captivity
by C. Irbis, R. Garriga, A. Kabasawa, and K. Ushida
Acknowledgment
Key Words Index for Vol. 54
Contents of Vol. 54