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Soil Bioremediation Soil Bioremediation An Approach Towards Sustainable Technology Edited by Dr. Javid A. Parray Department of Environmental Sciences Govt Degree College Eidgah, Srinagar Jammu and Kashmir, India Dr. Abeer Hashem Abd Elkhalek Mahmoud Botany and Microbiology Department, College of Science King Saud University Riyadh, Saudi Arabia Mycology and Plant Disease Survey Department Plant Pathology Research Institute Agriculture Research Center Giza, Egypt Prof. Riyaz Sayyed Department of Microbiology PSGVPM’S ASC College Shahada, India This edition first published 2021 © 2021 John Wiley & Sons Ltd All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by law. Advice on how to obtain permission to reuse material from this title is available at http://www.wiley.com/go/permissions. 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The advice and strategies contained herein may not be suitable for your situation. You should consult with a specialist where appropriate. Further, readers should be aware that websites listed in this work may have changed or disappeared between when this work was written and when it is read. Neither the publisher nor authors shall be liable for any loss of profit or any other commercial damages, including but not limited to special, incidental, consequential, or other damages. Library of Congress Cataloging-in-Publication Data Names: Parray, Javid Ahmad, editor. | Abd Elkhalek Mahmoud, Abeer Hashem, editor. | Sayyed, Riyaz, editor. Title: Soil bioremediation : an approach towards sustainable technology / edited by Dr. Javid A. Parray, Dr. Abeer Hashem Abd Elkhalek Mahmoud, Prof.Riyaz Sayyed. Description: Hoboken, NJ : Wiley-Blackwell, 2021. | Includes bibliographical references and index. Identifiers: LCCN 2021005025 (print) | LCCN 2021005026 (ebook) | ISBN 9781119547952 (cloth) | ISBN 9781119547969 (adobe pdf) | ISBN 9781119547938 (epub) Subjects: MESH: Soil Microbiology | Biodegradation, Environmental | Environmental Pollution–prevention & control | Soil Pollutants | Conservation of Natural Resources Classification: LCC QR111 (print) | LCC QR111 (ebook) | NLM QW 60 | DDC 579/.1757–dc23 LC record available at https://lccn.loc.gov/2021005025 LC ebook record available at https://lccn.loc.gov/2021005026 Cover Design: Wiley Cover Image: KATERYNA KON/SCIENCE PHOTO LIBRARY/Getty Images Set in 9.5/12.5pt STIXTwoText by SPi Global, Pondicherry, India 10 9 8 7 6 5 4 3 2 1 v Contents List of Contributors vii Preface xiii 1 In-situ Bioremediation: An Eco-sustainable Approach for the Decontamination of Polluted Sites 1 Shamsul Haq, Asma Absar Bhatti, Suhail Ahmad Bhat, Shafat Ahmad Mir, and Ansar ul Haq 2 Bioremediation: A Green Solution to avoid Pollution of the Environment 15 Muhammad Mahroz Hussain, Zia Ur Rahman Farooqi, Junaid Latif, Muhammad Umair Mubarak, and Fazila Younas 3 Laccase: The Blue Copper Oxidase 41 Deepa Thomas and A.K.Gangawane 4 Genome Assessment: Functional Gene Identification Involved in Heavy Metal Tolerance and Detoxification 51 Uttara Mahapatra, Ayantika Pal, Ajay Kumar Manna, and Dijendra Nath Roy 5 Bioremediation of Heavy Metal Ions Contaminated Soil 87 Agnieszka Saeid, Liliana Cepoi, Magdalena Jastrzębska, and Philiswa N. Nomngongo 6 Bioremediation of Dye Contaminated Soil 115 Manikant Tripathi, Shailendra Kumar, Durgesh Narain Singh, Rajeev Pandey, Neelam Pathak, and Hera Fatima vi Contents 7 Composting and Bioremediation Potential of Thermophiles 143 Mohammad Yaseen Mir, Saima Hamid, Gulab Khan Rohela, Javid A. Parray, and Azra N. Kamili 8 Ecological Perspectives of Halophilic Fungi and their Role in Bioremediation 175 Shekhar Jain, Devendra Kumar Choudhary, and Ajit Varma 9 Rhizobacteria-Mediated Bioremediation: Insights and Future Perspectives 193 Vijay Kant Dixit, Sankalp Misra, Shashank Kumar Mishra, Namita Joshi, and Puneet Singh Chauhan 10 Bioremediation Potential of Rhizobacteria associated with Plants Under Abiotic Metal Stress 213 Shrvan Kumar, Saroj Belbase, Asha Sinha, Mukesh Kumar Singh, Brajesh Kumar Mishra, and Ravindra Kumar 11 Molecular and Enzymatic Mechanism Pathways of Degradation of Pesticides Pollutants 257 Rangasamy Kirubakaran, Athiappan Murugan, and Javid A. Parray 12 Bioremediation of Heavy Metals and Other Toxic Substances by Microorganisms 285 Dhaneshwar Padhan, Pragyan Paramita Rout, Ritesh Kundu, Samrat Adhikary, and Purbasha Priyadarshini Padhi 13 Trends in Heavy Metal Remediation: An Environmental Perspective 331 Baba Uqab, Gousia Jeelani, Sabeehah Rehman, B.A. Ganai, Ruqeya Nazir, and Javid A. Parray Index 349 vii List of Contributors Samrat Adhikary Liliana Cepoi Department of Agricultural Chemistry Institute of Microbiology and and Soil Science Biotechnology Mohanpur Chisinau West Bengal Republic of Moldova India Puneet Singh Chauhan Saroj Belbase CSIR- National Botanical Research Institute Rajiv Gandhi South Campus, IAS Rana Pratap Marg Banaras Hindu University Lucknow Mirzapur Uttar Pradesh Uttar Pradesh India India Devendra Kumar Choudhary Suhail Ahmad Bhat Amity Institute of Microbial Department of Biochemistry Technology (AIMT) Pondicherry University Amity University Campus Puducherry Noida India Uttar Pradesh India Asma Absar Bhatti Division of Environmental Sciences Gousia Jeelani Sher-e-Kashmir University of Centre of Research for Development Agricultural Science and Technology University of Kashmir Srinagar Srinagar Jammu and Kashmir Jammu and Kashmir India India viii List of Contributors Vijay Kant Dixit Saima Hamid CSIR- National Botanical Research Centre of Research for Development Institute Department of Environmental Rana Pratap Marg Sciences Lucknow University of Kashmir Uttar Pradesh Srinagar India Jammu and Kashmir India Department of Environmental Science Kanya Gurukul Campus, Gurukul Ansar ul Haq Kangri University Department of Chemistry Haridwar University of Kashmir Uttarakhand Srinagar India Jammu and Kashmir India Zia Ur Rahman Farooqi Shamsul Haq Institute of Soil and Environmental Division of Environmental Sciences Sciences Sher-e-Kashmir University of University of Agriculture Faisalabad Agricultural Science and Technology Faisalabad Srinagar Pakistan Jammu and Kashmir India Hera Fatima Centre of Excellence, DST-FIST Muhammad Mahroz Hussain Supported Department of Microbiology Institute of Soil and Environmental Dr. Rammanohar Lohia Avadh University Sciences Ayodhya University of Agriculture Faisalabad Uttar Pradesh Faisalabad India Pakistan B.A. Ganai Shekhar Jain Centre of Research for Development Faculty of Life Sciences University of Kashmir Mandsaur University Srinagar Mandsaur Jammu and Kashmir Madhya Pradesh India India A.K.Gangawane Magdalena Jastrzębska Faculty of Applied Sciences University of Warmia and Mazury Parul University Olsztyn Vadodara Gujarat Poland India List of Contributors ix Namita Joshi Shrvan Kumar Department of Environmental Science Rajiv Gandhi South Campus, IAS Kanya Gurukul Campus Banaras Hindu University Gurukul Kangri University Mirzapur Haridwar Uttar Pradesh Uttarakhand India India Ritesh Kundu Azra N. Kamili Department of Agricultural Centre of Research for Development Chemistry and Soil Science Department of Environmental Sciences Mohanpur University of Kashmir West Bengal Srinagar India Jammu and Kashmir India Junaid Latif College of Natural Resources and Rangasamy Kirubakaran Environment Department of Biotechnology Northwest Agriculture and Vysya College Forestry University Salem Yangling Tamil Nadu China India Uttara Mahapatra Ravindra Kumar Department of Chemical Indian Agricultural Research Institute Engineering Regional Station National Institute of Technology Karnal Agartala Haryana Tripura India India Shailendra Kumar Ajay Kumar Manna Centre of Excellence, DST-FIST Department of Chemical Supported Department of Microbiology Engineering Dr. Rammanohar Lohia Avadh University National Institute of Technology Ayodhya Agartala Uttar Pradesh Tripura India India x List of Contributors Mohammad Yaseen Mir Muhammad Umair Mubarak Centre of Research for Development Institute of Soil and Environmental Department of Environmental Sciences Sciences University of Kashmir University of Agriculture Faisalabad Srinagar Faisalabad Jammu and Kashmir Pakistan India Athiappan Murugan Shafat Ahmad Mir Department of Microbiology Division of Environmental Sciences Periyar University Sher-e-Kashmir University Salem of Agricultural Science and Tamil Nadu Technology India Srinagar Jammu and Kashmir Ruqeya Nazir India Centre of Research for Development University of Kashmir Brajesh Kumar Mishra Srinagar Rajiv Gandhi South Campus, IAS Jammu and Kashmir Banaras Hindu University India Mirzapur Philiswa N. Nomngongo Uttar Pradesh India Department of Chemical Sciences University of Johannesburg Doornfontein Campus Shashank Kumar Mishra Johannesburg CSIR- National Botanical Research South Africa Institute Rana Pratap Marg Dhaneshwar Padhan Lucknow Department of Agricultural Chemistry Uttar Pradesh and Soil Science India Mohanpur West Bengal Sankalp Misra India CSIR- National Botanical Research Institute Scientist-B Rana Pratap Marg Central Silk Board Lucknow Bangalore Uttar Pradesh Karnataka India India