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Viral Diagnostics: Advances and Applications PDF

518 Pages·2014·9.7 MB·English
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Vol. 2 Pan Stanford Series on the High-Tech of Biotechnology Vol. 2 Pan Stanford Series on the High-Tech of Biotechnology From tFhreo mbe tghinen binegg inonf irnegc oorfd eredc ohrisdteodr yh iits tiosr ye viitd iesn et vtihdaetn tv itrhuaste sv iervuoslevse dev ionl voeudr imn iodustr. mWiderset. tWheeyr eo tnhee oy fo tnhee of the Vol.V 2ol. 2 PanP Satna nSftoarndf oSredr SiVeoeslr uioemnVs oe tohl u2nem tHheei g2 hH-iTgehc-The ocfh B oiof tBeicohtencohlongoylogy unwanted gifts bestowed on us as Adam left the Garden of Eden? 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nesleoaahuetndoa fesga regooptt td.an neslySih bgtiarekelDo.n nodg h eeeal evriaDnodr cn ssnecsl lov.Nnbo far eI h eaoS.Nltn obdaonWsal uoagt Sl as.fnor aotguAht p atae leDiHiotdtklstaeioctlovlc ihti r k lieOr oanooiun.Nt scbebW pirodnS a nlst hc soaaouico e aIla e hHaa otPtn votofrmallAnihap ia ik elsOlofronrA atlpect tsy eciuan ndseaircact to icctbsb aIpoee rhradaiufnoeospbolopurif ad e test sls frrorvAirlp emShat ee neaa PivaaicmtancIecrnstttbaiynenruainiei u rdtbooSens yprtuddsn dot tsoen orfegies epoet ef a rvPfnvce tse mparufnn tchSiai eetse dnrirrartaeSh nc syegesau daanttnoic eIe gsmalsSeionen n diten foe lhpSeneufte dd o cntntsP enrevencrr eerSh tea,rT rivmneceae edncreIenseliae negnad irtes aocatNSen gamtealdi nahnhr tdenedmalrl ehritna d, noervnoch lP ethendn o rsnoiaewnePardTremeca rlne tgaagerT moe a1oiitesdomaeleclaiti gn0r icsoho nhrcltldhkNyd0 io srhnhraPtAdn.efe.hc e rr ieananrTenHom wefihsiate vneel noclt wagic soae1onci stiNlt giaieoh1rorg0 hritdcd.raidlernig0 ray0n c eeifihHlAtk f.tryn0 f nos weaeicA.f.o wes efi lt ev gcHc ow1 soriadc aevtha iicg0rSirceo iaerrslaikcry.p0 dc enrrr eA.sfh.. rHia d n t e cefHoe w sHipp to evftnfifcsfiieouooaee r efisicch reIcbrr rr aSe cns.h r danul pSrc oeisHaa sctssipiacfstfn iensehhoei iaefipp ten sdI erappeuucni fhn c dnSrpeour ibtsaeccss ptc rrctblm es hesPiiiiaaaulmsi te ra inap pnohussinfmnsnan eeoudhretactier s redcb edneteiiisP mu slidlnu tpt iyaoiam essh sitrar bsnnm nee rhioaa tomendma srdeenn orirn Vmeal dnueap eir at3s e trrremDitm t1e iio amlihmdat3rybon ohnamek benaaroaan aerearleDnnrt ir l,mlia tyohk bnoaaeannrrl, l | Sall | Sall el | Sall el | Sall AmRoaLAbAdemReomsRroluaAoLitabLed embRASdee osLeeo.olsral LupodriltbMudeeiti bheteAS e os aeASeaL dr.lludLr .litpo liM kSe tpo bMbheASsa bhyadLe.allae a porll Mbr kSl bhy kSsaaeasalrl ll kS l sall ISBN 978-981V-3413364-43-0 ISBN 978-981-4364-43-0 V313V313 ISBNI S9B78N- 998718--4938614-4-4336-40-43-0 Pan Stanford Series on the High-Tech of Biotechnology Volume 2 VIRAL DIAGNOSTICS Pan Stanford Series on the High-Tech of Biotechnology Robert S. Marks Series Founding Editor Avram and Stella Goldstein-Goren Department of Biotechnology Engineering National Institute for Biotechnology Engineering Ilse Katz Institute for Nanoscale Science & Technology Ben Gurion University of the Negev Israel Titles in the Series Published Forthcoming Vol. 1 Vol. 4 Nanoantenna: Plasmon-Enhanced Nanomaterials for Water Spectroscopies for Biotechnological Management: Signal Amplification Applications for Biosensing from Nanostructures Marc Lamy de la Chapelle and Robert S. Marks and Annemarie Pucci, eds. Ibrahim Abdulhalim, eds. 2013 978-981-4463-47-8 (Hardcover) 978-981-4463-48-5 (eBook) 978-981-4303-61-3 (Hardcover) 978-981-4303-62-0 (eBook) Vol. 5 Vol. 2 Luminescent Biosensors Viral Diagnostics: Advances and Gerald Thouand and Robert S. Marks, Applications eds. Robert S. Marks, Leslie Lobel, and Amadou Alpha Sall, eds. Vol. 6 2015 Fibre-Optic Immunosensors and 978-981-4364-43-0 (Hardcover) Biosensors 978-981-4364-44-7 (eBook) Robert S. Marks, ed. Vol. 3 Electrochemical Biosensors Serge Cosnier, ed. 2015 978-981-4411-46-2 (Hardcover) 978-981-4411-47-9 (eBook) Pan Stanford Series on Renewable Energy — Volume 2 Pan Stanford Series on the High-Tech of Biotechnology Volume 2 VIRAL DIAGNOSTICS Advances and Applications edited by editors Robert S. Marks Preben Maegaard Leslie Lobel Anna Krenz Amadou Alpha Sall Wolfgang Palz The Rise of Modern Wind Energy Wind Power for the World CRC Press Taylor & Francis Group 6000 Broken Sound Parkway NW, Suite 300 Boca Raton, FL 33487-2742 © 2013 by Taylor & Francis Group, LLC CRC Press is an imprint of Taylor & Francis Group, an Informa business No claim to original U.S. Government works Version Date: 20141110 International Standard Book Number-13: 978-981-4364-44-7 (eBook - PDF) This book contains information obtained from authentic and highly regarded sources. Reason- able efforts have been made to publish reliable data and information, but the author and publisher cannot assume responsibility for the validity of all materials or the consequences of their use. The authors and publishers have attempted to trace the copyright holders of all material reproduced in this publication and apologize to copyright holders if permission to publish in this form has not been obtained. If any copyright material has not been acknowledged please write and let us know so we may rectify in any future reprint. Except as permitted under U.S. Copyright Law, no part of this book may be reprinted, reproduced, transmitted, or utilized in any form by any electronic, mechanical, or other means, now known or hereafter invented, including photocopying, microfilming, and recording, or in any information storage or retrieval system, without written permission from the publishers. For permission to photocopy or use material electronically from this work, please access www. copyright.com (http://www.copyright.com/) or contact the Copyright Clearance Center, Inc. (CCC), 222 Rosewood Drive, Danvers, MA 01923, 978-750-8400. CCC is a not-for-profit organiza- tion that provides licenses and registration for a variety of users. For organizations that have been granted a photocopy license by the CCC, a separate system of payment has been arranged. Trademark Notice: Product or corporate names may be trademarks or registered trademarks, and are used only for identification and explanation without intent to infringe. Visit the Taylor & Francis Web site at http://www.taylorandfrancis.com and the CRC Press Web site at http://www.crcpress.com October22,2014 16:16 PSPBook-9inx6in 00-Robert-S.-Marks-prelims Viral Diagnostics: Advances and Applications is dedicated to thenewlyopenedLeeKongChianSchoolofMedicine,Nanyang Technological University’s joint medical school with Imperial CollegeLondoninSingapore,withavisionto“RedefineMedicine andTransformHealthcare”. Wewishitafruitfulandsuccessfuljourney. TheEditors TThhiiss ppaaggee iinntteennttiioonnaallllyy lleefftt bbllaannkk October22,2014 15:52 PSPBook-9inx6in 00-Robert-S.-Marks-prelims Contents Foreword xix Preface xxiii 1 PracticalExperiencewithanIntegratedSyndromic SurveillanceSystemintheMedical,Veterinary,Nursing,and EmergencyResponseCommunities 1 WilliamStanhope,TigiWard,R.MichaelRagain, GarySimpson,andAlanZelicoff 1.1 MoreThanHalfofAllHumanInfectiousAgentsare Zoonotic 1 1.2 SyndromeReportingInformationSystems 3 1.2.1 Examples 6 1.2.2 SomeSuccesseswithSYRIS 11 1.2.3 ActionableInformation:TheSYRISAdvantage 12 1.3 ConflictofInterestDisclosure 14 2 EnvironmentalSurveillanceforPoliovirusesinIsrael: Bioerror,Bioterror,orjustMotherNature 17 LesterM.Shulman,YossiManor,DanitSofer, andEllaMendelson 2.1 TheSilentPresenceorCirculationofPoliovirusesin Poliomyelitis-FreeCommunities 17 2.2 GlobalEradicationofPoliomyelitis 18 2.3 TheNeedforRoutineSurveillance 20 2.4 TheProgramofEnvironmentalSurveillancefor PoliovirusinIsrael 20 2.5 PoliovirusesIsolatedfromEnvironmentalSamplesin Israel 23 October22,2014 15:52 PSPBook-9inx6in 00-Robert-S.-Marks-prelims viii Contents 2.6 MolecularAnalysisYieldsEpidemiological Information 23 2.7 TheContributionofRoutineSurveillancetoward UnderstandingOnePotentialRouteforReemergence ofNeurovirulentPolioviruses 27 2.8 MonitoringSilentPoliovirusInfections: TheContributionofSewageSurveillance andMolecularEpidemiology 30 3 Filoviruses:DeadlyPathogensandPotentialBioweapons 35 MichaelSchu¨mannandElkeMu¨hlberger 3.1 EmergenceofMarburgandEbolaViruses 35 3.2 TheVirusandtheDisease 36 3.3 FilovirusBiology 37 3.4 PathogenesisandClinicalPresentation 38 3.5 TheBioweaponPotentialofFiloviruses 40 3.5.1 DisseminationandTransmission 41 3.5.2 MortalityandImpactonPublicHealth 43 3.5.3 PublicPanicandSocialDisruption 45 3.5.4 PublicHealthPreparedness 46 3.5.4.1 Vaccination 46 3.5.4.2 Treatment 50 3.5.4.3 Diagnostics 53 3.6 FuturePerspectives 55 4 BridgingDiagnosticsResearch,Development,and Commercialization:DiagnosticsfortheDevelopingWorld 65 RosannaW.Peeling 4.1 LackofAccesstoDiagnosticsasaContributortothe BurdenofInfectiousDiseases 65 4.2 RoleofDiagnosticTests 66 4.3 DiagnosticLandscapeintheDevelopingWorld 67 4.4 LackofInternationalandNationalRegulatory StandardsforApprovalofDiagnostics 68 4.5 TheIdealDiagnosticTool 68 4.6 DevelopmentofDiagnosticTests 70 4.7 ChallengesintheAvailabilityofQuality-Assured DiagnosticTestsintheDevelopingWorld 70 4.8 OpportunitiesforaBetterFuture 73 October22,2014 15:52 PSPBook-9inx6in 00-Robert-S.-Marks-prelims Contents ix 4.8.1 TechnologicalAdvances 73 4.8.2 MoreFundingandMorePlayers 73 4.8.3 IncreasedEffortsatCapacityBuilding 75 4.9 BridgingResearch,ProductDevelopment,and Commercialization 75 5 OropoucheFever:AnOverviewoftheEpidemiologicaland MolecularAspectsintheBrazilianAmazonRegion 79 PedroF.C.VasconcelosandMarcioR.T.Nunes 5.1 OropoucheOutbreaks 79 5.2 TheOropoucheVirus 81 5.3 GeographicDistribution 83 5.4 MolecularBiologyoftheOROV 85 6 IsAvianInfluenzaSubtypeH5N1aCauseforConcern? ACriticalAnalysis 97 AlanP.Zelicoff 6.1 SpecterofPanzootics 97 6.2 TheNatureofInfluenzaAPredisposesIttoPandemics 98 6.3 ABriefHistoryoftheH5N1PanzooticandHuman Cases 102 6.4 ReviewofEpidemiologyofH5N1inHumans 105 6.4.1 TheBasisoftheConcernforH5N1asa PandemicThreat 106 6.4.2 CritiqueofthePandemicHypothesis 107 6.5 AreThereAsymptomaticH5N1Infections? 110 6.6 DoHumansHaveSomeImmunitytoH5N1? 111 6.7 ExperimentalData:VaccinationandChallenge ExperimentsinAnimalsUsingH5N1 114 6.8 TransmissionofReassortmentVariantsofH5N1 116 6.9 Wasthe1918PandemicDifferentfromOthers? 117 7 DiagnosticsofViralRespiratoryDiseases 127 TamarAmir,GuyGubi,andLeslieLobel 7.1 ViralRespiratoryDiseases 127 7.2 RespiratoryViruses 128 7.3 DiagnosticTechniques 132 7.3.1 Immunoassays 135 7.3.2 MolecularTechniques 136

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This book illustrates a variety of challenges that bug hunters try to solve. It is an outstanding collection of the insights and expertise of an interdisciplinary group of researchers from all walks of life: virologists, physicians, immunologists, electrochemists, physicists, computer scientists, bi
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