ebook img

Veterinary Microbiology and Microbial Disease PDF

479 Pages·2001·54.39 MB·English
Save to my drive
Quick download
Download
Most books are stored in the elastic cloud where traffic is expensive. For this reason, we have a limit on daily download.

Preview Veterinary Microbiology and Microbial Disease

Contents Preface vi 26. Bordetella bronchiseptica Acknowledgements vi and Bordetella avium Author biographies vii 27. Moraxella bovis 28. Brucella species 29. Campylobacter species Section I 30. Lawsonia intracellularis Introductory Bacteriology 31. Spirochaetes Microbial pathogens and infectious 32. Pathogenic anaerobic non-spore- disease forming Gram-negative bacteria Structure of bacterial cells 33. Mycoplasmas Cultivation, preservation and 34. Chlamydia and Chlamydophila inactivation of bacteria species Bacterial genetics and mechanisms 35. Rickettsiales of genetic variation 36. Bacterial species of limited Laboratory diagnosis of pathogenic significance bacterial disease Antimicrobial agents Section I11 Bacterial colonization, tissue Mycology invasion and clinical disease 37. General features of fungi associated with disease in animals Section I1 38. Dermatophytes Pathogenic Bacteria 39. Aspergillus species 8. StaphyIococcus species 40. Yeasts and disease production 9. Streptococci 41. Dimorphic fungi 10. Corynebacterium species 42. Zygomycetes of veterinary 11. Rhodococcus equi importance 12. Actinomycetes 43. Fungus-like organisms of veterinary 13. Listeria species importance 14. Erysipelothrix rhusiopathiae 44. Pneumocystis carinii 15. Bacillus species 45. Opportunistic infections caused 16. Clostridium species predominantly by phaeoid fungi 17. Mycobacterium species 46. Mycotoxins and mycotoxicoses 18. Enterobacteriaceae 47. Pathogenic algae and cyanobacteria 19. Pseudomonas aeruginosa and Burkholderia species Section IV 20. Aeromonas species, Plesiomonas Introductory Virology shigelloides and Vibrio species 21. Actinobacillus species 48. Nature, structure and taxonomy 22. Pasteurella species and of viruses Mannheimia haemolytica 49. Replication of viruses 23. Francisella tularensis 50. Genetics and evolution of viruses 24. Haemophilus species 51. Propagation of viruses and 25. Taylorella equigenitalis virus-cell interactions iv Veterinary Microbiology and Microbial Disease 52. Pathogenesis of viral diseases 301 74. Flaviviridae 426 53. Laboratory diagnosis of viral 75. Togaviridae 434 infections 305 76. Prions: unconventional infectious agents 43 8 Section V Viruses and Prions Section VI Microbial Agents and Disease Production 54. Herpesviridae 55. Papillomaviridae 77. Interactions of microbial pathogens 56. Adenoviridae with the nervous system 57. Poxviridae 78. Interactions of microbial pathogens 58. Asfarviridae with the male and female 59. Parvoviridae reproductive systems 60. Circoviridae 79. The role of microbial pathogens 61. Retroviridae in intestinal disease 62. Reoviridae 80. Microbial infections and 63. Birnaviridae pneumonia 64. Orthomyxoviridae 81. Bacterial causes of bovine 65. Paramyxoviridae mastitis 66. Rhabdoviridae 82. Foot infections of cattle, sheep 67. Bornaviridae and pigs associated with 68. Bunyaviridae microbial agents 69. Picornaviridae 83. Disinfection and other aspects of 70. Caliciviridae disease control 71. Astroviridae 84. Infection and immunity 72. Coronaviridae 73. Arteriviridae Index 517 Section I Introductory Bacteriology Chapter 1 Microbial pathogens and infectious disease Although the concept of infectious diseases is to be found showed that a contaminating yeast, which produced lactic in the works of classical Greek and Roman writers, their acid during fermentation and which differed morphologi- microbial aetiology was not clearly established until the cally from brewers' yeast, was responsible for the mid-nineteenth century when it was confirmed by the sci- spoilage. He deduced that both alcoholic and lactic entific contributions of Louis Pasteur and Robert Koch. fermentation resulted from the metabolism and replication During the intervening centuries a number of investigators of the living yeast cells. The solution to the spoilage hypothesized about the nature of contagion and disease. problem during fermentation of wine and beer products, Girolamo Fracastoro was one of the first to suggest, in his lay in heating the raw materials to about 120"F, in order to treatise De contagione published in 1546, that animate kill contaminating microorganisms, prior to the addition of agents were responsible for disease. One hundred years the appropriate yeast cells. This process, now known as later, Anthony van Leeuwenhoek demonstrated, in a pasteurization, is widely used to reduce microbial contami- sample of pus from his gums, microscopic 'animalcules', nation in order to prolong the shelf-life of milk and some which were later identified as infectious agents. other foods. For many centuries there had been philosophical and Pasteur effectively ended the controversy about scientific discussion about the 'spontaneous generation' of spontaneous generation through definitive confirmation of small living entities. One of the most persuasive naked- Spallanzani's experiments. Furthermore, he demonstrated eye observations which supported spontaneous generation, that contamination of nutrient broth when exposed to air namely the occurrence of maggots on putrefying meat, had resulted from microorganisms in dust particles settling on been put to rest by the experiments of Francesco Redi the fluid. (1626-1697) an Italian physician and naturalist. He An important technical advance, which stemmed from demonstrated that maggots developed in meat only when Pasteur's fermentation studies, was the development of a flies laid their eggs on it. However, van Leeuwenhoek's fluid medium suitable for culturing yeast cells. He then confirmation of the existence of microscopic 'animalcules' developed other liquid media containing specific ingredi- meant that the question of spontaneous generation ents which favoured the growth of particular pathogenic remained unresolved. The concept was apparently bacteria. It was this development which eventually supported by experiments conducted in the mid-eighteenth allowed him to formulate the germ theory of disease. The century by John Needham, an English naturalist. After germ theory formed the basis for Pasteur's experiments on boiling broth in containers which were then sealed, vaccination against fowl cholera, anthrax and rabies. An Needham detected microorganisms in the broth when the additional practical application of the theory was the containers were opened after a few days. Subsequently, introduction of phenol as a disinfectant for surgical Needham's experimental technique was shown to bc procedures by the British surgeon Joseph Lister. faulty. Boiling for a short time failed to eliminate all the Together with Pasteur, the German physician Robert microorganisms from the broth and the containers; an Koch is considered to be a cofounder of modern extended period of boiling was essential. When the broth microbiology. Having observed bacilli in the blood of ani- was boiled for periods approaching three quarters of an mals which had died from anthrax, Koch demonstrated hour and the flasks sealed immediately after boiling, their pathogenicity by injecting mice with the blood. The microorganisms were not demonstrable even after injected mice died and the bacilli were present in prepara- prolonged storage. Despite these exacting experiments tions from their swollen spleens. He was also able to which were carried out by Lazzaro Spallanzani, transfer the infection from mouse to mouse and to demon- protagonists of spontaneous generation continued to pro- strate the bacilli in each newly infected mouse. Initially, mote the concept up to the mid-1800s when Louis Pasteur Koch used blood serum for growing the anthrax bacillus in became involved in biological investigations. vitro. Later, he developed solid media which allowed Pasteur's interest in spontaneous generation was isolation of individual bacterial colonies. Using a solid prompted by experiments which he had conducted on medium, he was eventually able to isolate the tubercle spoilage during the fermentation of beet alcohol. He bacillus from the tissues of an experimental animal in 4 Veterinary Microbi 'ology and Microbial Disease which he had demonstrated microscopically the presence Table 1.1 Comparative features of prokaryotic and eukaryotic of the organism. As a result of these observations, Koch cells. formulated certain principles for proving that a specific microorganism caused a particular disease: the specific Prokaryotic cell Eukaryotic cell microorganism must be present in all affected animals and after isolation in vitro, must cause the disease when Usually less than 5pm in Usually more than 10 pm in inoculated into susceptible animals. The identical length diameter microorganism must then be isolated from the inoculated Membrane-boundo rganelles Membrane-boundo rganelles animals. absent present Pasteur's germ theory of disease and Koch's postulates 70s ribosomes 80s ribosomes in cytoplasm; are the two corner-stones on which microbiology is based 70s ribosomes in mitochondria and without which, this branch of biology could not have and chloroplasts advanced. During the past century, major developments have taken place in microbiological concepts, techniques Nucleic acid occurs as a single Nucleic acid is distributed in molecule, often circular chromosomes and applications. Modern microbiology encompasses the study of bacteria, fungi, viruses and other microscopic and Nuclear membrane and Nuclear membrane and submicroscopic organisms (Box 1.1). In veterinary micro- nucleolus absent nucleolus present biology, emphasis is placed on those microorganisms Replicate by binary fission Replicate by mitosis associated with infectious diseases of animals. Immunology, the study of host responses to infectious agents, is a discipline closely related to microbiology and second branch (Fig. 1.1). Lateral as well as horizontal is sometimes considered as a distinct but cognate subject. transfer of genetic material probably occurred in the course Living cells, the smallest units capable of independent of evolutionary development, with some eubacterial genes existence, can be divided into two sharply differentiated incorporated into members of the Archaebacteria and groups, eukaryotes and prokaryotes. The main differenti- perhaps with some prokaryotic genes incorporated into ating features of eukaryotic and prokaryotic cells are eukaryotes. This lateral gene transfer may explain how presented in Table 1.1. Eukaryotes possess true nuclei complex eukaryotic cells acquired some of their genes and which contain chromosomes and individual cells replicate organelles. The endosymbiosis hypothesis proposes that, by mitosis. In addition, a typical eukaryotic cell contains at some stage in their early development, eukaryotic cells organelles such as mitochondria, a Golgi apparatus, became primitive phagocytes and acquired particular lysosomes and relatively large ribosomes. Organisms in bacterial cell types which enhanced their respiratory the Archaebacteria and Eubacteria, which are less complex activity (de Duve, 1996). It is proposed that the engulfed than eukaryotic organisms, are prokaryotes which lack true bacteria provided extra energy through this enhanced membrane-bound nuclei. Their genetic information is respiration to the host cell and eventually evolved into contained in a single circular chromosome. In some mitochondria. A similar phenomenon may account for the prokaryotic cells such as bacteria, extrachromosomal development of chloroplasts in plant cells. The DNA, in the form of plasmids, encodes for certain charac- cytoplasmic membrane is the site of respiratory or teristics of the organism. Although the origin of life is a photosynthetic energy-generation in prokaryotes unlike much debated subject, it is probable that primitive eukaryotes, in which these activities occur in the microorganisms originated from ancestral life forms membranes of mitochondria and chloroplasts. several billion years ago (Fig. 1.1). The degree of related- ness among microorganisms can be assessed by Pathogenic microorganisms comparison of their ribosomal ribonucleic acid (rRNA). There is some evidence that all organisms developed from Most microorganisms found in nature are not harmful a group of primitive cells rather than from a single to humans, animals or plants. Indeed, many bacteria and organism (Doolittle, 1999). Prokaryotcs are considered as fungi make an important contribution to biological one branch of the phylogenetic tree and eukaryotes as the activities which take place in soil, in water and in the alimentary tract of animals. Those microorganisms which can cause disease in animals or humans are referred to as Box 1.1 Subdivisions of microbiology. pathogenic microorganisms. Bacteriology, the study of bacteria Bacteria Mycology, the study of fungi Microorganisms belonging to the Archaebacteria are not Virology, the study of viruses associated with diseases of domestic animals. Organisms The study of unconventional infectious (bacteria) belonging to the Eubacteria include many agents including prions pathogens of veterinary importance. Microbial pathogens and infectious disease 5 Figure 1.1 The evolutionary relationships of living organisms. Endosymbiosis is the postulated mechanism whereby eukaryotic cells acquired mitochondria or chloroplasts by incorporation of prokaryotic cells. Bacteria are unicellular and are smaller and less growth. Two groups of small bacteria, rickettsiae and complex than eukaryotic cells such as mammalian red chlamydiae, which are unable to multiply on inert media, blood cells (Table 1.2). They usually have rigid cell walls require living cells for in vitro growth. Cyanobacteria, containing a peptidoglycan layer, multiply by binary formerly referred to as blue-green algae, utilize chloro- fission and exhibit considerable morphological diversity. phyll for some metabolic pathways. Unlike algae, which They occur as rods, cocci, helical forms and occasionally store chlorophyll in organelles referred to as chloroplasts, as branching filaments. Despite their morphological cyanobacteria have chlorophyll distributed inside their cell diversity, most bacteria are between 0.5 pm and 5 pm in membranes. length. Motile bacteria possess flagella by which they can movk through liquid media. The majority of bacteria can Fungi grow on suitable inert media; some require special growth Yeasts, moulds and mushrooms belong to a large group of supplements and particular atmospheric conditions for non-photosynthetic eukaryotes, termed fdngi. Fungi may be either unicellular or multicellular. Multicellular fungi produce filamentous microscopic structures called moulds; Table 1.2 A comparison of the morphology and size of bacterial yeasts which are unicellular, have a spherical or ovoid cells relative to a mammalian red blood cell. shape and multiply by budding. In moulds the cells are cylindrical and attached end-to-end, forming branched hyphae (Table 1.3). A notable feature of fungi is their Cell Morphology/size Comments ability to secrete potent enzymes which can digest organic matter. When moisturc is present and other environmental Red blood cell Readily seen using conditions are favourable, fungi can degrade a wide variety conventional light microscopy of organic substrates. A small number of yeasts and 7 C L ~ moulds are pathogenic for humans and animals. Some fungi invade tissues whereas others produce toxic Bacillus 0 Rod-shaped cells, usually substances called mycotoxins which, if present on crops or stained by the Gram method. in stored food such as grain or nuts, can cause disease in 5 Clm Using bright-field microscopy, a magnification of I ,000is~ animals and humans. required to observe most bacterial cells. Algae Coccus 0 Spherical-shaped Often A morphologically and physiologically diverse group of occuring in chains or in grape- 1 Pm like clusters organisms, algae, are usually considered plant-like because they contain chlorophyll. Many algae are free-living in Splrochaete Thin, helical bacteria ~ ~ ~ k - f ~ ~ l d microscopy (without staining) water; others grow on the surfaces of rocks and on other 10 Cml structures in the environment. Some algae produce ~ ~ ~ ~ ~ $ ~ , " t ~ , " ~ ~ $ $ ~ , " ~ ~ , " ~ ~ unusual microorganisms. pigments which impart distinct colouration to water 6 Veterinary Microbiology and Microbial Disease Table 1.3 A comparison of the morphology and size of a induced changes, structurally altered abnormal protein bacterial cell and two fungal forms. accumulates in and damages long-lived cells such as neurons. Genetic factors seem to influence the Structure Morpholopy/size Comments susceptibility of humans and animals to prion diseases. Prions exhibit remarkable resistance to physical and Bacterial cell chemical inactivation procedures. Coccus 0 Often occur in chains or grape- like clusters 1 um Biological classification and nomenclature Fungal forms Microscopic living organisms were formerly classified on 0 Yeast Reproduce by buddtng the basis of phenotypic expression including morphology and distinct attributes reflecting unique metabolic properties. Increasingly, classification methods for microorganisms have come to rely heavily on genotypic analysis. In recent years, this has led to changes in the classification and nomenclature of microorganisms. Mould Branched structures (hyphae) Species are groups of organisms with similar genetic composed of many cells and metabolic characteristics. Closely related species are initially grouped into genera and thereafter into families, orders, classes, phyla and kingdoms (Box 1.2). Organisms are usually referred to by their generic and specific names, surfaces containing algal blooms. When water tempera- for example, the bacterium which causes anthrax in tures are high, algal growth may be marked, leading to the humans and animals is termed Bacillus anthracis, Bacillus production of toxins which can accumulate in shellfish or being the generic name and anthracis the specific name. in water containing algal blooms. This binomial system of nomenclature was devised in the eighteenth century by the Swedish naturalist, Linnaeus. Viruses Viruses are not classified according to the Linnaean Unlike bacteria and fungi, viruses are not cells. A virus system because they are not cells and cannot reproduce particle or virion consists of nucleic acid, either DNA or independently. They are generally grouped in families RNA, enclosed in a protein coat called a capsid. In based on virion morphology and nucleic acid type. Further addition, some viruses are surrounded by an envelope. subdivision of pathogenic animal viruses relates to the Viruses are much smaller than bacteria, and range in size species of host affected and to the clinical disease which is . from 20 nm to 300 nm in diameter (Table 1.4). Despite produced. their simple structure, viruses occur in many shapes. Some are spherical, others are brick and bullet-shaped and a few have an elongated appearance. Because they lack Table 1.4 A comparison of a bacterial cell and a large and a the structures and enzymes necessary for metabolism and small virusa. independent reproduction, viruses can multiply only within living cells. Both prokaryotic and eukaryotic cells are susceptible to infection by viruses. Those viruses which Stmctum Morphology/size Comments invade bacterial cells are called bacteriophages. Pathogenic viruses which infect humans and animals can cause serious disease by invading and destroying cells. A small number of viruses are aetiologically implicated in the development of malignant tumours in humans and animals. Prions Viruses Viruses cannot be seen Infectious particles which are smaller than viruses, have using conventional bright- been implicated in the neurological diseases of animals Poxvirus field microscopy. Electron microscopy at a kidr6umans termed transmissible spongiform magnification of up to ncephalopathies. These particles, called prions, are 300 nm 100,000~is used to demonstrate viruses in !i stinct from viruses and appear to be devoid of nucleic pawovirus 8 clinical specimens or in ackk, Prions seem to be composed of an abnormally folded 20 nm laboratory preparations. prbtein capable of inducing conformational changes in corresponding normal host cell protein. Following the a not drawn to scale / / ('i Microbial pathogen:P and infectious disease 7 Table 1.6 Units of measurement used in microbiology. Box 1.2 Categories used for the taxonomic classification of microorganisms. Unit Abbreviation Comments Kingdom (includes all microorganisms) -Phylum (group of related classes in kingdom) Millimetre mm One thousandth of a metre ( 1 ~m3). -Class (group of related orders in phylum) Bacterial and fungal colony sizes are usually measured in mm. When -Order (group of related families in class) growing on a suitable medium, -Family (group of related genera in order) bacterial colonies range in size from -Genus (group of related species in family) 0.5 mm to 5 mm -Species (organisms with similar features) Micrometre pm One thousandth of a millimetre (micron) (10-6 m). Used for the size of Microscopical techniques bacterial and fungal cells. Most bacteria range in size from 0.5 pm to A number of different microscopic methods are employed 5 prn. A small number of bacteria for examining microorganisms. These include bright-field, may exceed 20 pm in length dark-field, phase contrast and electron microscopy. Table Nanometre nm One thousandth of a micrometre 1.5 summ~rizesc ommon staining methods used in (10-9 m). Used for expressing the microscopy and the particular types of microorganisms for size of viruses. Most viruses of which the techniques are appropriate. Units of measure- veterinary importance range in size from 20 nm to 300 nm ment employed in microscopy are indicated in Table 1.6. The maximum magnification obtainable by bright-field microscopy, using oil-immersion objectives, is approxi- mately 1000~.W ith bright-field microscopy, suitably stained bacteria as small as 0.2 pm in size can be unstained specimens. This procedure is more appropriate visualized. With dark-field microscopy, the scattering of for research purposes than for routine diagnostic light by fine microorganisms such as spirochaetes microbiology. suspended in liquid allows them to be observed against a In transmission electron microscopy, beams of electrons dark background. In common with dark-field techniques, are used in place of visible light to visualize small phase-contrast microscopy can be used to examine structures such as viruses. Specimens, placed on grids, are negatively stained with electron-dense compounds such as potassium phosphotungstate and viewed as magnified images on a fluorescent screen. Magnifications greater Table 1.5 Microscopical techniques used in microbiology. than 100,000~a re possible with modern instruments. Scanning electron microscopy is used to obtain three- Technique Comments dimensional views of microorganisms when coated with a thin film of heavy metal. With this technique, a wide Bright-field Used for demonstrating the morphology and range of magnifications up to 100,000~is feasible. microscopy size of stained bacteria and fungi; staining affinity may allow preliminary classification of bacteria and the morphology of fungal References structures permits identification of the genus de Duve, C. (1996). The birth of complex cells. Scientific Phase-contrast Used for examining unstained cells in microscopy suspension American, 274,3845, Doolittle, W.F. (1999). Phylogenetic classification and the uni- versal tree. Science, 284, 2124-2128. Dark-field Used for examining unstained bacteria such microscopy as spirochaetes in suspension Further reading Fluorescent Used for identifying microorganisms with microscopy specific antibodies conjugated with DebrC, P. (1998). Louis Pasteur. Johns Hopkins University fluorochromes Press Ltd., London. ' Transmission Used for demonstrating viruses in biological Lechevalier, H.A. and Solotorovsky, M. (1965). Three Centuries electron material and for identifying ultrastructural ofMicrobiology. McGraw-Hill Book Company, New York. microscopy details of bacterial, fungal and mammalian Madigan, M.T., Martinko, J.M. and Parker, J. (1997). Brock cells Biology of Microorganisms. Eighth Edition. Preqtice Hall Scanning Used for demonstrating the three-dimensional International, London. electron structure of microorganisms Schlegel, H.G. (1993). General Microbiology. Seventh Edition. microscopy Cambridge University Press, Cambridge. Chapter 2 The structure of bacterial cells A typical bacterial cell is composed of a capsule, cell wall, Table 2.1 Structural components of bacterial cells. cell membrane, cytoplasm containing nuclear material and appendages such as flagella and pili (fimbriae). Certain species of bacteria can produce forms termed spores or Chemical Structure Comments composition endospores, which are resistant to environmental influences. Some of the structural features of pathogenic Capsule Usually poly- Often associated with bacteria which are important in the production of disease saccharide; virulence; interferes with or may be useful for the laboratory diagnosis of infection polypeptide in phagocytosis; may prolong are reviewed in Chapters 5 and 7. The principal structural Bacillus anthracis survival in the environment components of bacterial cells are presented in Table 2.1. Cell wall Peptidoglycan and Peptidoglycan is responsible teichoic acid in for the shape of the Capsule Gram-positive organism. LPS is bacteria. responsible for endotoxic Bacteria can synthesize extracellular polymeric material Lipopolysacch- effects. Porins, protein aride (LPS), structures, regulate the which is usually described as glycocalyx. In some protein, phospho- passage of small molecules bacterial species this polymeric material forms a capsule, a lipid and peptido- through the phospholipid well-defined structure closely adherent to the cell wall. A glycan in Gram- layer. slime layer is formed when the polymeric material is negative bacteria present as a loose meshwork of fibrils around the cell. Most capsules are composed of polysaccharides; Bacillus Cytoplasmic Phospholipid Selectively permeable membrane bilaver membrane involved in active species such as B. anthracis produce polypeptide capsules. transport of nutrients, Defined capsules can be visualized by light microscopy respiration, excretion and using negative staining techniques. Bacteria with well- chemoreception. defined capsular material produce mucoid colonies on agar media. However, the capsules of most species of bacteria Flagellum Protein called Filamentous structure which can be demonstrated only by electron microscopy or by (plural, flagellin confers motility flagella) immunological methods using antisera specific for the capsular (K) antigens. The main function of capsular Pilus (plural, Protein called pilin Also known as fimbria (plural, material appears to be protection of the bacterium from pili) ' fimbriae). Thin, straight, adverse environmental conditions such as desiccation. In thread-like structures present on many Gram-negative the body, capsules of pathogenic bacteria may facilitate bacteria. Two types exist, adherence to surfaces and interfere with phagocytosis. attachment pili and conjugation pili. Cell wall Chromosome DNA Single circular structure with The tough, rigid cell walls of bacteria protect them from no nuclear membrane mechanical damage and osmotic lysis. As cell walls are Ribosome RNA and protein Involved in protein synthesis non-selectively permeable, they exclude only very large molecules. Differences in the structure and chemical Storage Chemical Present in some bacterial composition of the cell walls of bacterial species account granules or composition cells; may be composed of for variation in their pathogenicity and influence other inclusions variable polyphosphate (volutin or metachromatic granules), characteristics including staining properties. poly-beta-hydroxybutyrate Peptidoglycan, a polymer unique to prokaryotic cells, (reserve energy source), ' imparts rigidity to the cell wall. This polymer is composed glycogen of chains of alternating subunits of N-acetylglucosamine

See more

The list of books you might like

Most books are stored in the elastic cloud where traffic is expensive. For this reason, we have a limit on daily download.