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Yan Voloshin Irina Belaya Roland Krämer The Encapsulation Phenomenon Synthesis, Reactivity and Applications of Caged Ions and Molecules The Encapsulation Phenomenon Yan Voloshin (cid:129) I rina Belaya Roland Krämer The Encapsulation Phenomenon Synthesis, Reactivity and Applications of Caged Ions and Molecules Yan Voloshin Roland Krämer Nesmeyanov Institute of Organoelement Anorganisch Chemisches Institut Compounds, Russian Academy Ruprecht-Karls-Univers. Heidelberg of Sciences and Gubkin Russian State Heidelberg University of Oil and Gas Germany Moscow Russia Irina Belaya Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences Moscow Russia ISBN 978-3-319-27737-0 ISBN 978-3-319-27738-7 (eBook) DOI 10.1007/978-3-319-27738-7 Library of Congress Control Number: 2016938266 © Springer International Publishing Switzerland 2016 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifi cally the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfi lms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specifi c statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. T he publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. Printed on acid-free paper This Springer imprint is published by Springer Nature The registered company is Springer International Publishing AG Switzerland Y.Z.V. dedicates this book to his beloved son Sasha and daughter Lisa Pref ace Nowadays, a separate realm of modern chemistry is populated by compounds with encapsulated species. Those may be organic and inorganic, anions, cations or neutral molecules that are almost completely isolated from external factors (other ligands, solvents, etc.) by 3D caging (encapsulating) ligands to give molecular and polymeric capsules. The caged species have unique phys- icochemical properties responsible for specifi c reactivity and selectivity of their binding and release. The resulting cage complexes may be used for rec- ognition, separation, carrying, storage, and detection of various encapsulated species in the fi eld of molecular and supramolecular devices and modern materials, such as catalysts, carriers of therapeutically active compounds, and many others. Depending on the nature of chemical or supramolecular bonds between precursors (ligand syntones, some of them are shown in i talic ) of the ligands (shown in b old ), the cage complexes can be divided into three main classes: covalent, supramolecular, and coordination capsules. Covalent capsules (Chap. 2 ) include imine cages and their reduced deriva- tives; amine, amide, and pyrrole encapsulating ligands; cryptophanes and cryptands; and arene- and cavitand-based capsules. These subclasses refl ect the nature of their caging ligands. The pioneering works of J.-M. Lehn, D.J. Cram, and J. Nelson should be emphasized; further development in this fi eld has been achieved by M. Mastalerz, A.P. Davis, A.I. Cooper, V. Amendola, J.-P. Dutasta, F. Huang, K. Severin, and their coworkers. S upramolecular capsules (Chap. 3 ) can be divided into two main sub- classes: arene- and cavitand-based assemblies. J. Rebek Jr. and D.N. Reinhoudt are pioneers in the fi eld of these “soft” encapsulating ligands and their cage complexes. General experimental and theoretical (such as so-called “Rebek’s rule”) approaches to the design, synthesis, and study of supramolecular cap- sule have been also introduced by J. Rebek Jr., with a valuable input from B.C. Gibb, D. Ajami, J. L. Atwood, D. Rudkevich, and A. Shivanyuk. C oordination capsules (Chap. 4 ) , formed by coordination-driven self- assembly of complimentary organic syntones containing donor groups with appropriate metal ions, can be divided into three main subclasses depending on the nature of their cage frameworks (4n- and 6n-capped capsules) and coordination modes (bridging or cross-linking) of the metal ions. Pioneering efforts in synthetic and physical chemistry of these capsules have been made by M. Fujita and K.N. Raymond. Several new types of coordination capsules have been also designed and prepared by J.R. Nitschke, R.W. Saalfrank, vii viii Preface M.J. Hardie, M.D. Ward, K. Severin, G.H. Clever, P.D. Beer, M. Shionoya, and their coworkers. Continuous progress in the chemistry of these classes of compounds with encapsulated species has been summarized in several reviews by J. Rebek Jr. and coworkers [1–17] and, very recently, by M. Yoshizawa [18]. The coordina- tion capsules have been nicely covered by M. Fujita [19–25], K.N. Raymond [26–31], and others [32–40] and, more recently, by J.R. Nitschke [41–45], G.H. Clever [46], and M. Shionoya [47]. In 2002, we published the book Clathrochelates: Synthesis, Structure and Properties [48] that summarized general concepts and features of the complexes with an encapsulated metal ion. M ain developments in the design and chemistry of covalent capsules and their practical applications as they appeared to date are reported in many reviews [21, 34, 35, 48–65] and books [66–69] by J.-M. Lehn, K. Bowman– James, V. Amendola, A.P. Davis, and others in 1988–2013 and, very recently, by M. Mastalerz [70]. The aim of this book is to generalize the main progress in the design and synthesis of capsules with various caged species (some of them also shown in italic) that are important for their classifi cation, reactivity, and practical applications recognized in 2014. T he authors would like to thank Dr. Ekaterina Lebed and Dr. Yulia Nelubina (INEOS RAS) for their valuable contribution in writing the book. We are also much indebted to Prof. M. Fujita for fruitful suggestions and comments. Moscow, Russia Yan Z. Voloshin Moscow, Russia Irina G. Belaya Heidelberg, Germany Roland Krämer References 1. Rebek J Jr (1996) Assembly and encapsulation with self-complementary molecules. Chem Soc Rev 25(4):255–264 2. Rebek J Jr (1996) Molecular recognition and assembly. Acta Chem Scand 50(8):707–716 3. Rebek J Jr (1996) Molecular assembly and encapsulation. Pure Appl Chem 68(6):1261–1266 4. Conn MM, Rebek J Jr (1997) Self-assembling capsules. Chem Rev 97(5):1647–1668 5. Rebek J Jr (2000) Host-guest chemistry of calixarene capsules. Chem Commun 8:637–643 6. Hof F, Craig SL, Nuckolls C, Rebek J Jr (2002) Molecular encapsulation. Angew Chem Int Ed 41:1488–1508 7. Palmer LC, Rebek J Jr (2004) The ins and outs of molecular encapsulation. Org Biomol Chem 2(21):3051–3059 8. Rebek J Jr (2004) Some got away, but others didn’t. J Org Chem 69(8):2651–2660 9. Rebek J Jr (2005) Simultaneous encapsulation: molecules held at close range. Angew Chem Int Ed 44(14):2068–2078 10. Schramm MP, Rebek J Jr (2006) Moving targets: recognition of alkyl groups. Chem Eur J 12(23):5924–5933 11. Biros SM, Rebek J Jr (2007) Structure and binding properties of water-soluble cavi- tands and capsules. Chem Soc Rev 36(1):93–104 12. Rebek J Jr (2007) Contortions of encapsulated alkyl groups. Chem Commun 27:2777–2789 Preface ix 13. Rebek J (2009) Molecular behavior in small spaces. Acc Chem Res 42(10): 1660–1668 1 4. Berryman OB, Dube H, Rebek J Jr (2011) Photophysics applied to cavitands and cap- sules. Isr J Chem 51(7):700–709 15. Durola F, Dube H, Ajami D, Rebek J Jr (2011) Control of nanospaces with molecular devices. Supramol Chem 23(1 & 2):37–41 1 6. Avram L, Cohen Y, Rebek J Jr (2011) Recent advances in hydrogen-bonded hexameric encapsulation complexes. Chem Commun 47(19):5368–5375 1 7. Ajami D, Rebek J Jr (2013) More chemistry in small spaces. Acc Chem Res 46(4): 990–999 18. Yoshizawa M, Klosterman JK (2014) Molecular architectures of multi-anthracene assemblies. Chem Soc Rev 43(6):1885–1898 1 9. Fujita M (1998) Metal-directed self-assembly of two- and three-dimensional synthetic receptors. Chem Soc Rev 27:417–425 20. Maurizot V, Yoshizawa M, Kawano M, Fujita M (2006) Control of molecular interac- tions by the hollow of coordination cages. Dalton Trans 2750–2756 2 1. Fujita N, Shinkai S, James TD (2008) Boronic acids in molecular self-assembly. Chem Asian J 3:1076–1091 2 2. Yoshizawa M, Fujita M (2005) Self-assembled coordination cage as a molecular fl ask. Pure Appl Chem 77:1107–1112 23. Yoshizawa M, Klosterman JK, Fujita M (2009) Functional molecular fl asks: new prop- erties and reactions within discrete, self-assembled hosts. Angew Chem Int Ed 48:3418–3438 2 4. Fujita M, Umemoto K, Yoshizawa M, Fujita N, Kusukawa T, Biradha K (2001) Molecular paneling via coordination. Chem Commun 6:509–518 2 5. Yoshizawa M, Fujita M (2010) Development of unique chemical phenomena within nanometer-sized, self-assembled coordination hosts. Bull Chem Soc Jpn 83(6): 609–618 26. Caulder DL, Raymond KN (1999) Supermolecules by design. Acc Chem Res 32:975–982 27. 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