Contributors to Volume 143 Article numbers are in parentheses lbllowing the names of contributors. Affiliations listed are current, DOUGLAS 0. ADAMS (72), Department of PETER K. CHIANG (34, 64), Division of -oiB Viticulture and Enology, University of chemistry, Walter Reed Army Institute of ,ainr?ifilaC Davis, Cahfornia 61659 Research, Washington, D.C. 70302 HOWARD ADLER (10), Department of Bio- JOHN D. H. COOPER (22), Department of chemistry and Molecular Biology, ehT Biochemistry, Coventry and Warwick- University of Chicago, Chicago, Illinois shire Hospital, Coventry CVI 4FH, -nE 73606 gland TERESA ALONSO (34), Department of Bio- EUGENE G. DEMASTER (17), Medical Re- chemistry, Walter Reed Army Institute of search Laboratories, Veterans Adminis- Research, Washington, D.C. 20307 tration Medical Center, Minneapolis, MARY E. ANDERSON (57), Department of Minnesota 55417 Biochemistry, Cornell University Medical JAMES DE LA ROSA (26), Division of Nutri- College, New York, New York 12001 tional Sciences, Cornell University, WILLIAM M. AWAD, JR. (65), Departments Ithaca, New York 35841 of Medicine and Biochemistry, University MICHAEL W. DUFFEL (25), Department tf of Miami School of Medicine, Miami, Medicinal Chemistry and Natural Prod- Florida 10133 ucts, College of Pharmacy, University of DAVID H. BAKER (55), Department of Ani- Iowa, Iowa City, Iowa 24225 real Sciences and Division of Nutritional NOBUYOSHI ESAKI (24, 45, 54, 70, 79, 86), Sciences, University of Illinois, Urbana, Institute for Chemical Research, Kyoto Illinois 10816 University, Uji, Kyoto-Fu 611, Japan HANS-OTTO BEUTLER (3), Boehringer- ROBERT C. FAHEY (14, 15), Department of Mannheim GmbH, Biochemical Research Chemistry, University of California-San Center, 2318-D Tutzing, Federal Republic Diego, La Jolla, ainrbJilaC 39029 of Germany HEINZ FANKHAUSER (61), CIBA-Geigy RAYMOND F. BURK (56), Department of Ltd., CH-4002 Basel, Switzerland Medicine, University of Texas Health Sci- MARC W. FARISS (16), Department of Pa- ence Center, San Antonio, Texas 48287 thology, Medical College of Virginia, Richmond, Virginia 89232 MARY R. BURROUS (42), Department of Bio- chemistry and Molecular Biology, ehT JACK H. FELLMAN (30, 32, 39), Department University of Chicago, Chicago, Illinois of Biochemistry, ehT Oregon Health Sci- 73606 ences University, Portland, Oregon 10279 ERNEST B. CAMPBELL (29, 51), Department S. J. FOSTER (35), Department of Nutri- of Biochemistry, Cornell University Medi- tional Sciences, University "~ Wisconsin- cal College, New York, New York 12001 Madison, Madison, Wisconsin 60735 THOMAS R. CHAUNCEY (60), Department of CLEMENT E. FURLONG (23), Division of Biochemistry and Molecular Biology, ehT Medical Genetics, Center for Inherited University of Chicago, Chicago, Illinois Diseases, University of Washington, Se- 73606 attle, Washington 55189 xiii xiv CONTRIBUTORS TO VOLUME 143 HOWARD E. GANTHER (9, 35), Department KAZUHIRO 1MAI (12), Branch Hospital of Nutritional Sciences, University of Pharmacy, University of Tokyo, Bunkyo- Wisconsin-Madison, Madison, Wisconsin ku, Tokyo 112, Japan 60735 MAKOTO ISHIMOTO (40, 87), Department of LEONARD J. GARBER (61), lnstitutefi)r Pho- Chemical Microbiology, Faculty of Phar- tobiology, Brandeis University, Waltham, maceutical Sciences, Hokkaido Univer- Massachusetts 45220 sity, Sapporo, Hokkaido 060, Japan JOHN GIOVANELLI (71, 76), Laboratory of KIMIKAZU IWAMI (74), Department of Agri- General and Comparative Biochemistry, cultural Chemistry, Kyoto Prefectural Section on Alkaloid Biosynthesis, Na- University, Shimogamo Nakaragicho, tional Institute of Mental Health, Be- Sakyoku, Kyoto 606, Japan thesda, Maryland 21202 WILLIAM B. JAKOBY (36), Laboratory of LOWELL A. GOLDSMITH (90), Dermatology Biochemistry and Metabolism, National Unit, University of Rochester Medical Institute of Diabetes and Digestive and Center, Rochester, New York 24641 Kidney Diseases, National Institutes of RICHARD K. GORDON (34), Division of -DiB Health, Bethesda, Maryland 29802 chemistry, Walter Reed Army Institute of HIERONIM JAKUBOWSKI (73), Katedra Bio- Research, Washington, D.C. 70302 chemii, Akademia Rolnicza, .IH Wolytiska ALICE A. GREENE (23), Department of Pedi- ,53 PL-60-637 Poznah, Poland atrics, University of California-San PETER C. JOCELYN (I ,1 46), Department of Diego, La Jolla, CaliJbrnia 39029 Biochemistry, University of Edinburgh Medical School, Edinburgh EH8 9XD, OWEN W. GRIFFITH (29, 38, 49, 50, 51, 53, 63, 68), Department of Biochemistry, Cor- Scotland nell University Medical College, New CARL R. JOHNSON (52), Department of York, New York 12001 Chemistry, Wayne State University, De- ANDRZEJ GURANOWSKI (73), Katedra Bio- troit, Michigan 20284 chemii, Akademia Rolnicza, .IH -oW HAROLD KADIN (47), Analytical Research ,akszFyl PL-60-637 PoznatL Poland and Development, The Squibb Institute DAVID I. HALL (75), Department of Botany, for Medical Research, New Brunswick, Ohio University, Athens, Ohio 10754 New Jers'ey 30980 PATRICK HARDEN (41), W. Alton Jones Cell HIROSH KANZAKI (85), Department of Ag- Science Center, Lake Placid, New York ricultural Chemistry, Kyoto University, 64921 Kyoto 606, Japan MICHAEL A. HAYWARD (51), Department of H. KONDO (40, 87), Department of Chemi- Biochemistry, Cornell University Medical cal Microbiology, Faculty of Pharmaceu- College, New York, New York 12001 tical Sciences, Hokkaido University, Sap- LAWRENCE L. HIRSCHBERGER (26), Division poro, Hokkaido 060, Japan of Nutritional Sciences, Cornell Univer- YASUO KONISHI (18), Monsanto Company sity, Ithaca, New York 35841 AA4I, Chesterfield, Missouri 89136 H. ROBERT HORTON (89), Department of EDWARD M. KOSOWER (13, 48), School of Biochemistry, North Carolina State Uni- Chemistry, Sackler Faculty f~c Exact Sci- versity, Raleigh, North Carolina 59672 ences, TeI-Aviv University, Ramat-Aviv, Yu HOSOKAWA (67), Division ~f Maternal leT Aviv ,87996 Israel and Child Nutrition, National Institute of NECHAMA S. KOSOWER (13, 48), Depart- Nutrition, Toyama, Shinjuku-ku, Tokyo ment of Human Genetics, Sackler School ,261 Japan of Medicine, Tel-Aviv University, Ramat- JANETTE HOUK (21), Environmental Protec- Aviv, Tel Aciv ,87996 Israel tion Agency, Washington, D.C. 06402 JAN P. KRAUS (66), Department ~fHuman CONTRIBUTORS TO VOLUME 143 XV Genetics, Yale University School of Medi- University of Texas at Austin, Austin, cine, New Haven, Connecticut 01560 Texas 21787 R. J. KRAUS (9, 35), Department of Nutri- SENGODA G. RAMASWAMY (36), Laboratory tional Sciences, University of Wisconsin- of Biochemistry and Metabolism, Na- Madison, Madison, Wisconsin 60735 tional Institute of Diabetes and Digestive K. KORIYAMA (28), Department of Pharma- and Kidney Diseases, National Institutes cology, Kyoto Prefectural University of of Health, Bethesda, Maryland 29802 Medicine, Kawaramachi-Hirokaji, Kami- BETH REDFERN (17), Medical Research myo-Ku, Kyoto 602, Japan Laboratories, Veterans Administration JOHN LANE (42), Department of Biochemis- Medical Center, Minneapolis, Minnesota try and Molecular Biology, The Univer- 71455 sity of Chicago, Chicago, Illinois 73606 DONALD J. REED (16), Department of -DiB GERALD LARSEN (41), Metabolism and Ra- chemistry, Oregon State University, Cor- diation Research Laboratory, U.S. De- vallis, Oregon 13379 partment of Agriculture, North Dakota FRANCO RENOSTO (59), Department of -DiB State University Station, Fargo, North chemistry and Biophysics, University of Dakota 50185 California, Davis, ainr~ifilaC 61659 FRANZ-JOSEF LHNWEBER (4, 27), Depart- RUSSELL B. RICHERSON (69), Abbott Labo- ment of Drug Metabolism, Hoffman-La ratories, North Chicago, Illinois 46006 Roche, Inc., Nutley, New Jersey 01170 ALEXANDER B. YOR (37, 62), Protein Chem- DANlEL J. LOGAN (25), Clayton Foundation istry Group, John Curtin School of Medi- Biochemical Institute, The University ~f cal Research, Australian National Uni- Texas at Austin, Austin, Texas 21787 versity, Canberra ACT 2601, Australia MARJORIE F. Lou (20), Alcon Laboratories, TEKCHAND SAIDHA (58, 61), Institute for Inc., Fort Worth, Texas 10167 Photobiology, Brandeis University, Wal- JOHN H. MANGUM (65), Department of tham, Massachusetts 45220 Chemistry, Brigham Young University, VALENTINE H. SCHAEFFER (41), Depart- Provo, Utah 20648 ment of Biochemistry and Biophysics, ALTON MEISTER (57), Department of -DiB Center for Drugs and Biologics, Food and chemistry, Cornell University Medical Drug Administration, Bethesda, Mary- College, New York, New York 12001 land 29802 GEORGE A. MIuRA (34), Division of -DiB HAROLD A. SCHERAGA (18), Baker Labora- chemistry, Walter Reed Army Institute of tory of Chemistry, Cornell University, Research, Washington, D.C. 70302 Ithaca, New York 35841 KENNETH J. MONTY (4, 27), Department of JEROME A. SCHIFF (58, 61), Institute for Biochemistry, University of Tennessee, Photobiology, Brandeis University, Wal- Knoxville, Tennessee 69973 tham, Massachusetts 45220 TORU NAGASAWA (82, 85), Department of AHLERT SCHMIDT (77), Botanisches lnsti- Agricultural Chemistry, Kyoto Univer- tat, Universitdt Miinchen, D-8000 Munich sity, Kyoto 606, Japan ,91 Federal Republic of Germany GERALD L. NEWTON (14, 15), Department JERRY A. SCHNEIDER (23), Department of of Chemistry, University o( California- Pediatrics, University of California-San San Diego, La Jolla, Califi)rnia 39029 Diego, La Jolla, California 39029 HACHIRO OZAKI (81), Central Research IRWIN H. SEGEL (59), Department of -DiB Laboratories, Ajinomoto Co., Int., Ka- chemistry and Biophysics, University of wasaki 210, Japan ,ainr)ifilaC Davis, California 61659 LAWRENCE L. POULSEN (20), Clayton PETER A. SEUBERT (59), Center for the Neu- Foundation Biochemical Institute, The robiology of Learning and Memory, Uni- xvi CONTRIBUTORS TO VOLUME 143 versity of California, lroine, California Laboratory of Chemistry, Cornell Univer- 71729 sity, Ithaca, New York 35841 ISAMU SHIIO (81), Central Research Labo- SEIZEN TOYAMA (88), Department of Agri- ratories, Ajinomoto Co., Inc., Yokohama cultural Chemistry, University of the Ryu- ,442 Japan kyus, Nishihara, Okinawa ,10-309 Japan R~EEVA SINGH (21), Department of Chem- TOSHIMASA TOYO'OKA (12), Department of istry, Harvard University, Cambridge, Foods, National Institute of Hygienic Sci- Massachusetts 83120 ences, Setagaya-ku, Tokyo ,851 Japan WILLIAM E. SKIB~, (65), Department of -oiB D. C. TURNEEL (22), Department of Bio- chemistry, University of Miami School of chemistry, Coventry and Warwickshire Medicine, Miami, Florida 10133 Hospital, Coventry CVI 4FH, England MARK X. SLIWKOWSKI (19), Triton Bio- TOSHIHIKO UBUKA (5), Department of Bio- sciences, Inc., Alameda, California 10549 chemistry, Okayama University Medical IVAN K. SMITH (75), Department of Botany, School, Okayama 700, Japan Ohio University, Athens, Ohio 10754 LAWRENCE C. UHTEG (60), Department f.o MARGARET SMITH (23), Department of -eP Biochemistry and Molecular Biology, ehT diatries, University of California-San University of Chicago, Chicago, Illinois Diego, La Jolla, California 39029 73606 KENJI SODA (24, 43, 44, 45, 54, 70, 78, 79, JACK R. UREN (84), Battellee Columbus 86, 88), Institute for Chemical Research, Laboratories, Columbus, Ohio 10234 Kyoto University, Uji, Kyoto-Fu 611, RANDOLPH T. WEDDING (8), Department of Japan Biochemistry, University of California, Bo $6R8O (1, 31), Department f.o Clinical Riverside, California 12529 Chemistry, LinkOping University, Re- CATHERINE L. WEINSTEIN (38, 49, 68), -eD gional Hospital, LinkOping, Sweden partment of Biochemistry, Cornell Uni- versity Medical College, New York, New JAMES L. STEVENS (41), .W Alton Jones Cell York 12001 Science Center, Lake Placid, New York 64921 MARILYN S. WELLS (65), Department of Medicine, Veterans Administration Medi- MARTHA H. STIPANUK (26), Division qfNu- cal Center, Miami, Florida 33101, and tritional Scienves, Cornel/ University, University of Miami School of Medicine, Ithaca, New York 35841 Miami, Florida 10133 DARRVL M. SULLIVAN (2), Hazleton Labo- AIKO WESTLEY (42), Department of Bio- ratories America, Inc., Madison, Wiscon- chemistry and Molecular Biology, ehT sin 50735 University of Chicago, Chicago, Illinois HAROLD E. SWAISGOOD (19, 89), Depart- 73606 ment f~( Food Science and Biochemistry, JOHN WESTLEY (6, 10, 42, 60), Department North Carolina State University, Raleigh, of Biochemistry and Molecular Biology, North Carolina 59672 ehT University of Chicago, Chicago, Illi- HIOEHIKO TANAKA (43, 44), Institute for nois 73606 Chemical Research, Kyoto University, MARK P. WESTRICK (52), Department of Uji, Kyoto-Fu 611, Japan Chemistry, Wayne State University, -eD Y. TANAKA (28), Department of Pharmacol- troit, Michigan 20284 ogy, Kyoto Prefectural University of GEORGE M. WmTESIDES (21), Department Medicine, Kawaramachi-Hirokoji, Kyoto f.o Chemistry, Harvard University, Cam- ,206 Japan bridge, Massachusetts 83120 THEODORE W. THANNHAUSER (18), Baker ELISABETH M. WOLF-HEuss (33), Analyti- CONTRIBUTORS OT VOLUME 143 xvii cal Department, Degassa Pharma Group, IHSORIH AWAGANAY (91), Mitsubishi-Kasei 0006-D Frankfurt l, Federal Republic of Institute "q ,~~L Sciences, Maehida, Germany Tokyo ,491 Japan JOHN L. WOOD (7), Department of -DiB GNAHS FA YANG (72), Department of Vege- chemistry, University of Tennessee-Mem- table Crops, University of ,ainr)ifilaC phis, Memphis, Tennessee 11183 Davis, California 61659 HIDEAKI YAMADA (82, 85), Department of NEDOYK OTOMUSAY (74), Research Insti- Agricultural Chemistry, Kyoto Univer- tute fin" Food Science, Kyoto University, sity, Kyoto 606, Japan Gokasho, Uji, Kyoto 611, Japan SHuzo ATAGAMAY (80, 83), Department of KAZUO YONAHA (88), Department of Agri- Biology, Facahy of General Education, cultural Chemistry, University of the Ryu- h~G University, Gfu ,11-105 Japan kyus, Nishihara, Okinawa ,10-309 Japan KENJI IHCUGAMAY (67), Division of Mater- DANIEL M. ZIEGLER (20, 25, 69j, Clayton nal and Child Nutrition, National Insti- Foundation Biochemical Institute, ehT tute of Nutrition, Toyama, Shinjuku-ku, University of Texas at Austin, Austin, Tokyo ,261 Japan Texas 21787 Preface Because of the large number of diverse and critical roles played by sulfur in several of its oxidation states, the subject of testing and prepar- ing derivatives of sulfur or of measuring, purifying, and characterizing enzymes associated with sulfur metabolism is represented in most of the individual volumes of Methods ni Enzymology. For example, many of the methyl transferases which utilize S-adenosylmethionine have found a home in volumes that deal with nucleic acids, lipids, amines, or detoxica- tion as the major topic; the polyamines are treated in a separate volume. Enzymes and procedures involving sulfur-containing metabolites such as coenzyme A are presented in most of the volumes dealing with metabolic enzymes, and aspects of biotin biochemistry have appeared in books in this series which range in emphasis from vitamins to affinity labeling. Since no single book could cover all of these topics in a reasonable man- ner, such dispersal is entirely appropriate. In fact, most of the examples cited above are not presented in this volume. It is because of the broad distribution of topics that we include, as an appendix, a brief index to other articles on some of the subject areas covered here. Progress and interest in the work on sulfur and sulfur amino acids, on seleno and tellurium analogs, and on the separation and quantitation of sulfur-containing compounds have led to the suggestion that a single source book of methods would be useful. We have responded by provid- ing descriptions of a large number of analytical methods for inorganic and organic sulfur compounds in their several oxidation states. This volume also includes general and specific methods of preparation for a number of organic sulfur compounds and presents procedures for the purification and assay of a group of enzymes that participate in inorganic sulfur me- tabolism as well as in the pathways of formation and utilization of cys- teine, methionine, and related compounds. We express our appreciation to the individual authors who have con- tributed to the volume and, in the process, have made their often unique expertise available to other investigators interested in the biochemistry of sulfur. WILLIAM B. JAKOBY OWEN W. GRIFFITH xix METHODS IN ENZYMOLOGY EDITED YB Sidney P. Colowick and Nathan O. Kaplan VANDERBILT UNIVERSITY DEPARTMENT OF CHEMISTRY SCHOOL OF MEDICINE UNIVERSITY OF CALIFORNIA NASHVILLE, TENNESSEE AT SAN DIEGO LA JOLLA. CALIFORNIA .1 Preparation and Assay of Enzymes II. Preparation and Assay of Enzymes III. Preparation and Assay of Substrates IV. Special Techniques for the Enzymologist .V Preparation and Assay of Enzymes VI. Preparation and Assay of Enzymes )deunitnoC( Preparation and Assay of Substrates Special Techniques VII. Cumulative Subject Index xxi METHODS IN ENZYMOLOGY EDITORS-IN-CHIEF Sidney P. Colowick and Nathan O. Kaplan EMULOV VIII. Complex Carbohydrates Edited by ELIZABETH F. NEUFELD DNA VICTOR GINSBURG EMULOV IX. Carbohydrate Metabolism Edited by WILLIS A. DOOW EMULOV X. Oxidation and Phosphorylation Edited yb DLANOR W. AND MAYNARD ESTABROOK E. PULLMAN EMULOV XI. Enzyme Structure Edited by C. H. W. HIRS EMULOV XII. Nucleic Acids (Parts A and B) Edited yb LAWRENCE AND GROSSMAN KIVIE MOLDAVE EMULOV XIII. Citric Acid Cycle Edited by J. M. NIETSNEWOL EMULOV XIV. Lipids Edited by J. M. NIETSNEWOL EMULOV XV. Steroids and Terpenoids Edited by DNOMYAR B. NOTYALC VOLUME XVI. Fast Reactions Edited yb KENNETH NITSUK EMULOV XVII. Metabolism of Amino Acids and Amines (Parts A and B) Edited by HERBERT TABOR AND CELIA WHITE TABOR iiixx xxiv SDOHTEM NI YGOLOMYZNE EMULOV XVIII. Vitamins and Coenzymes (Parts A, B, and C) Edited yb DLANOD B. KCIMROCCM DNA LEMUEL D. THG1RW VOLUME XlX. Proteolytic Enzymes Edited yb GERTRUDE E. PERLMANN AND LASZLO LORAND EMULOV XX. Nucleic Acids and Protein Synthesis (Part C) Edited yb KIVIE EVADLOM DNA ECNERWAL NAMSSORG EMULOV XXI. Nucleic Acids (Part D) Edited yb ECNERWAL NAMSSORG DNA KIVIE EVADLOM EMULOV XXII. Enzyme Purification and Related Techniques Edited yb B. WILLIAM YBOKAJ EMULOV XXIII. Photosynthesis (Part A) Edited yb YNOHTNA NAS ORTEIP EMULOV XXIV. Photosynthesis and Nitrogen Fixation (Part B) Edited yb YNOHTNA NAS ORTE1P EMULOV XXV. Enzyme Structure (Part B) Edited yb C. H. W. HIRS DNA EGRES N. FFEHSAM1T EMULOV XXVI. Enzyme Structure (Part C) Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT EMULOV XXVII. Enzyme Structure (Part D) Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT EMULOV XXVIII. Complex Carbohydrates (Part B) Edited by ROTCIV GRUaSNIG EMULOV XXIX. Nucleic Acids and Protein Synthesis (Part E) Edited yb ECNERWAL NAMSSORG DNA KIVlE EVADLOM EMULOV XXX. Nucleic Acids and Protein Synthesis (Part F) Edited yb KIVIE EVADLOM DNA ECNERWAL NAMSSORG EMULOV XXXI. Biomembranes (Part A) Edited by REHCSIELF YENDIS DNA RETSEL REKCAP METHODS IN ENZYMOLOGY XXV EMULOV XXXII. Biomembranes (Part B) Edited by YENDIS REHCSIELF DNA RETSEL REKCAP EMULOV XXXIII. Cumulative Subject Index Volumes I-XXX Edited by AHTRAM G. DENNIS DNA DRAWDE A. SINNED EMULOV XXXIV. Affinity Techniques (Enzyme Purification: Part B) Edited yb WILLIAM B. YBOKAJ DNA MEIR KEHCLIW EMULOV XXXV. Lipids (Part )B Edited yb JOHN M. NIETSNEWOL EMULOV XXXVI. Hormone Action (Part A: Steroid Hormones) Edited by BERT W. O'MALLEY DNA JOEL G. NAMDRAH EMULOV XXXVII. Hormone Action (Part B: Peptide Hormones) Edited by BERT W. O'MALLEY DNA JOEL G. NAMDRAH EMULOV XXXVIII. Hormone Action (Part C: Cyclic Nucleotides) Edited by JOEL G. NAMDRAH DNA BERT W. O'MALLEY EMULOV XXXIX. Hormone Action (Part D: Isolated Cells, Tissues, and Organ Systems) Edited yb JOEL G. NAMDRAH DNA BERT W. O'MALLEV EMULOV XL. Hormone Action (Part E: Nuclear Structure and Function) Edited by BERT W. O'MALLEY DNA JOEL G. NAMDRAH EMULOV XLI. Carbohydrate Metabolism (Part )B Edited by W. A. DOOW EMULOV XLII. Carbohydrate Metabolism (Part )C Edited by W. A. DOOW EMULOV XLIII. Antibiotics Edited by JOHN H. HASH EMULOV XLIV. Immobilized Enzymes Edited by KLAUS HCABSOM EMULOV XLV. Proteolytic Enzymes (Part B) Edited yb LASZLO DNAROL
Description: