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Stem Cells in Regenerative Medicine – Methods and Protocols; Volume 482 of Methods in Molecular Biology - Humana Press PDF

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Stem Cells in Regenerative Medicine M E T H O D S I N M O L E C U L A R B I O L O G Y TM John M. Walker, SERIES EDITOR 502. Bacteriophages: Methods and Protocols, Volume 2: 468. Wnt Signaling, Volume 1: Pathway Methods and MolecularandAppliedAspects,editedbyMarthaR.J. MammalianModels,editedbyElizabethVincan, ClokieandAndrewM.Kropinski2009 2008 501. Bacteriophages: Methods and Protocols, Volume 1: 467. Angiogenesis Protocols: Second Edition, edited by Isolation,Characterization,andInteractions,editedby StewartMartinandCliffMurray,2008 MarthaR.J.ClokieandAndrewM.Kropinski2009 466. Kidney Research: Experimental Protocols, edited by 499. CandidaAlbicans:MethodsandProtocols,editedbyDr. TimD.HewitsonandGavinJ.Becker,2008 RonaldL.CihlarandRichardA.Calderone,2009 465. Mycobacteria,SecondEdition,editedbyTanyaParish 496. DNAandRNAProfilinginHumanBlood:Methods andAmandaClaireBrown,2008 andProtocols,editedbyPeterBugert,2009 464. TheNucleus,Volume2:PhysicalPropertiesandIma- 493. Auditory and Vestibular Research: Methods and gingMethods,editedbyRonaldHancock,2008 Protocols,editedbyBerndSokolowski,2009 463. TheNucleus,Volume1:NucleiandSubnuclearCom- 490. ProteinStructures,Stability,andInteractions,edited ponents,editedbyRonaldHancock,2008 byJohnW.Schriver,2009 462. LipidSignalingProtocols,editedbyBanafsheLarijani, 489. DynamicBrainImaging:MethodsandProtocols,edited RudigerWoscholski,andColinA.Rosser,2008 byFahmeedHyder,2009 461. Molecular Embryology: Methods and Protocols, 485. HIV Protocols: Methods and Protocols, edited by SecondEdition,editedbyPaulSharpeandIvor VinayakaR.PrasadandGanjamV.Kalpana,2009 Mason,2008 484. FunctionalProteomics:MethodsandProtocols,edited 460. Essential Concepts in Toxicogenomics, edited by byJulieD.Thompson,ChristineSchaeffer-Reiss,and DonnaL.MendrickandWilliamB.Mattes,2008 MariusUeffing,2008 459. PrionProteinProtocols,editedbyAndrewF.Hill,2008 483. Recombinant Proteins From Plants: Methods and 458. ArtificialNeuralNetworks:MethodsandApplications, Protocols, edited by Lo´ic Faye and Veronique editedbyDavidS.Livingstone,2008 Gomord, 2008 457. MembraneTrafficking,editedbyAlesVancura,2008 482. Stem Cells in Regenerative Medicine: Methods and Protocols,editedbyJulieAudetandWilliamL. 456. AdiposeTissueProtocols,SecondEdition,editedby Stanford,2009 KaipingYang,2008 455. Osteoporosis,editedbyJenniferJ.Westendorf,2008 481. Hepatocyte Transplantation: Methods and Protocols, editedbyAnilDhawanandRobinD.Hughes,2008 454. SARS-andOtherCoronaviruses:LaboratoryProtocols, editedbyDaveCavanagh,2008 480. MacromolecularDrugDelivery:MethodsandProtocols, editedbyMattiasBelting,2008 453. Bioinformatics, Volume 2: Structure, Function, and Applications,editedbyJonathanM.Keith,2008 479. Plant Signal Transduction: Methods and Protocols, editedbyThomasPfannschmidt,2008 452. Bioinformatics, Volume 1: Data, Sequence Analysis, andEvolution,editedbyJonathanM.Keith,2008 478. TransgenicWheat, Barley andOats: Production and CharacterizationProtocols,editedbyHuwD.Jones 451. PlantVirologyProtocols:FromViralSequencetoPro- teinFunction,editedbyGaryFoster,ElisabethJohan- andPeterR.Shewry,2008 sen,YiguoHong,andPeterNagy,2008 477. Advanced Protocols in Oxidative Stress I, edited by 450. Germline Stem Cells, edited by Steven X. Hou and DonaldArmstrong,2008 ShreeRamSingh,2008 476. Redox-Mediated Signal Transduction: Methods and 449. MesenchymalStemCells:MethodsandProtocols,edi- Protocols,editedbyJohnT.Hancock,2008 tedbyDarwinJ.Prockop,DouglasG.Phinney,and 475. Cell Fusion: Overviews and Methods, edited by BruceA.Brunnell,2008 ElizabethH.Chen,2008 448. PharmacogenomicsinDrugDiscoveryandDevelop- 474. NanostructureDesign:MethodsandProtocols,edited ment,editedbyQingYan,2008 byEhudGazitandRuthNussinov,2008 447. Alcohol: Methods and Protocols, edited by Laura E. 473. Clinical Epidemiology: Practice and Methods, edited Nagy,2008 byPatrickParfreyandBrendonBarrett,2008 446. Post-translationalModificationsofProteins:Toolsfor 472. CancerEpidemiology,Volume2:ModifiableFactors, FunctionalProteomics,SecondEdition,editedby editedbyMukeshVerma,2008 ChristophKannicht,2008 471. Cancer Epidemiology, Volume 1: Host Susceptibility 445. AutophagosomeandPhagosome,editedbyVojoDere- Factors,editedbyMukeshVerma,2008 tic,2008 470. Host-Pathogen Interactions: Methods and Protocols, 444. PrenatalDiagnosis,editedbySinhueHahnandLaird editedbySteffenRuppandKaiSohn,2008 G.Jackson,2008 469. WntSignaling,Volume2:PathwayModels,editedby 443. Molecular Modeling of Proteins, edited by Andreas ElizabethVincan,2008 Kukol,2008 M M B TM E T H O D S I N O L E C U L A R I O L O G Y Stem Cells in Regenerative Medicine Edited by Julie Audet and William L. Stanford University of Toronto, Toronto, ON, Canada Editors JulieAudet WilliamL.Stanford UniversityofToronto,Toronto,ON, UniversityofToronto,Toronto,ON, Canada Canada [email protected] [email protected] SeriesEditor JohnM.Walker UniversityofHertfordshire Hatfield,Herts. UK ISSN:1064-3745 e-ISSN:1940-6029 ISBN:978-1-58829-797-6 e-ISBN:978-1-59745-060-7 DOI10.1007/978-1-59745-060-7 LibraryofCongressControlNumber:2008939410 #HumanaPress,apartofSpringerScienceþBusinessMedia,LLC2009 Allrightsreserved.Thisworkmaynotbetranslatedorcopiedinwholeorinpartwithoutthewrittenpermissionofthe publisher(HumanaPress,c/oSpringerScience+BusinessMedia,LLC,233SpringStreet,NewYork,NY10013,USA), except for brief excerpts in connection with reviews or scholarly analysis. Use in connection with any form of informationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilarmethodology nowknownorhereafterdevelopedisforbidden. Theuseinthispublicationoftradenames,trademarks,servicemarks,andsimilarterms,eveniftheyarenotidentified assuch,isnottobetakenasanexpressionofopinionastowhetherornottheyaresubjecttoproprietaryrights. Printedonacid-freepaper springer.com Preface Regenerative Medicine is devoted to replacing diseased cells, tissues, or organs, or repairing tissues in vivo by augmenting natural or inducing latent regenerative pro- cesses. Underlying these goals is the manipulation – both expansion and directed differentiation–ofstemcells,whicharetheprimarysourceofdenovotissueregenera- tion and maintenance of organ homeostasis. In this book, Stem Cells in Regenerative Medicine, we aim to provide biomedical researchers, clinicians and biomedical engi- neersanupdatedrepresentationofthelandscapeofstemcell-basedtherapiesinawide spectrumoftissuesystemsandontogenicstages,startingfromtheisolationandculture of stem cells to their actual use in vivo. In this first edition, we have attempted to compileafoundationofprotocolswhichcanberefinedinsubsequentpublications.We hope that this series of protocols will contribute to the definition of standardized proceduresfor the manipulationof somatic and embryonic stem cells in research and clinicalapplications. WilliamL.Stanford,Ph.D. JulieAudet,Ph.D. v Contents Preface..................................................................v Contributors............................................................. xi ColorPlates ............................................................. xv PART I: STEM CELL SOURCES AND MANIPULATION 1 DerivationandManipulationofMurineEmbryonicStemCells ..................3 AlexanderMeissner,SarahEminli,andRudolfJaenisch 2 PatterningMouseandHumanEmbryonicStemCellsUsing Micro-contactPrinting ................................................21 RaheemPeerani,CelineBauwens,EugeniaKumacheva, andPeterW.Zandstra 3 EfficientGeneKnockdownsinHumanEmbryonicStemCells UsingLentiviral-BasedRNAi............................................35 AsminTulpuleandGeorgeQ.Daley 4 MeasurementofCell-PenetratingPeptide-MediatedTransduction ofAdultHematopoieticStemCells .......................................43 AzizaP.ManceurandJulieAudet 5 StemCellSourcesforRegenerativeMedicine ...............................55 AliM.Riazi,SarahY.Kwon,andWilliamL.Stanford PART II: REGENERATION OF THE BLOOD SYSTEM 6 InvestigatingtheInteractionsBetweenHaemopoieticStemCells andTheirNiche:MethodsfortheAnalysisofStemCellHoming andDistributionWithintheMarrowFollowingTransplantation ................93 BrendaWilliamsandSusanK.Nilsson 7 ExVivoMegakaryocyteExpansionandPlateletProduction fromHumanCordBloodStemCells ....................................109 Vale´rieCortin,NicolasPineault,andAlainGarnier 8 ExVivoGenerationofHumanRedBloodCells:ANewAdvance inStemCellEngineering..............................................127 LucDouayandMarie-CatherineGiarratana PART III: REGENERATION OF THE NERVOUS SYSTEM 9 IsolationandManipulationofMammalianNeuralStemCellsInVitro...........143 ClaudioGiachino,OnurBasak,andVerdonTaylor 10 Isolation,Expansion,andDifferentiationofMouse Skin-DerivedPrecursors ..............................................159 KarlJ.L.FernandesandFredaD.Miller vii viii Contents 11 XenotransplantationofEmbryonicStemCell-DerivedMotorNeurons intotheDevelopingChickSpinalCord...................................171 HynekWichterle,MirzaPeljto,andStephaneNedelec 12 TransplantationofNeuralStem/ProgenitorCellsintoDeveloping andAdultCNS .....................................................185 TongZheng,GregoryP.MarshallII,K.AmyChen,andEricD.Laywell 13 TransplantationofEmbryonicStemCell-DerivedDopaminergic NeuronsinMPTP-TreatedMonkeys ....................................199 JunTakahashi,YasushiTakagi,andHidemotoSaiki PART IV: REGENERATION OF THE EPIDERMIS 14 IsolationandCultureofEpithelialStemCells..............................215 JonathanA.NowakandElaineFuchs 15 RegenerationofSkinandCorneabyTissueEngineering .....................233 DanielleLarouche,ClaudiePaquet,JulieFradette, PatrickCarrier,Franc¸oisA.Auger,andLucieGermain PART V: REGENERATION OF THE MUSCULOSKELETAL SYSTEM 16 ProspectiveIsolationofMesenchymalStemCellsfromMouse CompactBone......................................................259 BrentonJ.Short,NathalieBrouard,andPaulJ.Simmons 17 Isolation,Propagation,andCharacterizationofHumanUmbilicalCord PerivascularCells(HUCPVCs) .........................................269 RahulSarugaser,JaneEnnis,WilliamL.Stanford, andJohnE.Davies 18 BoneMarrow-DerivedMesenchymalStemCells:Isolation,Expansion, Characterization,ViralTransduction,andProduction ofConditionedMedium ..............................................281 MassimilianoGnecchiandLuisG.Melo 19 TemplateDNA-StrandCo-SegregationandAsymmetricCellDivision inSkeletalMuscleStemCells...........................................295 VasilyShinin,BarbaraGayraud-Morel,andShahragimTajbakhsh 20 IsolationandGraftingofSingleMuscleFibres .............................319 CharlotteA.CollinsandPeterS.Zammit PART VI: REGENERATION OF THE VASCULAR SYSTEM 21 DifferentiationandDynamicAnalysisofPrimitiveVessels fromEmbryonicStemCells............................................333 GefeiZengandVictoriaL.Bautch 22 DerivationofContractileSmoothMuscleCellsfromEmbryonic StemCells .........................................................345 SanjaySinha,MarkH.Hoofnagle,andGaryK.Owens PART VII: REGENERATION OF THE PANCREAS AND LIVER 23 Islet-DerivedProgenitorsasaSourceofInVitroIsletRegeneration.............371 StephenHanleyandLawrenceRosenberg Contents ix 24 IsolationandCharacterizationofHepaticStemCells,or‘‘OvalCells,’’ fromRatLivers .....................................................387 ThomasD.Shupe,AnnaC.Piscaglia,Seh-HoonOh,AntonioGasbarrini, andBryonE.Petersen 25 ReprogrammingofLivertoPancreas ....................................407 ShifaanThowfeequ,Wan-ChunLi,JonathanM.W.Slack, andDavidTosh Index.................................................................419 Contributors JULIEAUDET,PHD(cid:2) TerrenceDonnellyCentreforCellularandBiomolecularResearch, Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto,Ontario,Canada FRANC¸OISA.AUGER,MD (cid:2)ExperimentalOrganogenesisLaboratory/LOEXand Department of Surgery and Ophthalmology, Laval University, Sainte-Foy, Quebec, Canada ONURBASAK(cid:2)DepartmentofMolecularEmbryology,MaxPlanckInstituteof Immunobiology,Freiburg,Germany VICTORIAL.BAUTCH,PHD(cid:2)DepartmentofBiology,CarolinaCardiovascularBiology Center,UniversityofNorthCarolinaatChapelHill,ChapelHill,NC,USA CELINEBAUWENS,MSc(cid:2)TerrenceDonnellyCentreforCellularandBiomolecular Research, Institute of Biomaterials and Biomedical Engineering, University of Toronto,Toronto,Ontario,Canada NATHALIEBROUARD,PHD(cid:2)PeterMacCallumCancerCentre,Victoria,Australia PATRICKCARRIER,MSc(cid:2) ExperimentalOrganogenesisLaboratory/LOEXand Department of Surgery and Ophthalmology, Laval University, Sainte-Foy, Quebec, Canada K.AMYCHEN (cid:2)DepartmentofNeuroscience,McKnightBrainInstitute,Universityof Florida,Gainesville,FL,USA CHARLOTTEA.COLLINS,PHD(cid:2) WellcomeTrustCentreforStemCellResearch,University ofCambridge,Cambridge,UnitedKingdom VALE´RIECORTIN,PHD(cid:2)De´partementdeRechercheetDe´veloppement,He´ma-Que´bec, Que´becCity,Que´bec,Canada GEORGEQ.DALEY,MD,PHD(cid:2)HarvardMedicalSchool,KarpFamilyResearchBuilding, DivisionofHematology/Oncology,Children’sHospitalBoston,Boston,MA,USA JOHNE.DAVIES,PHD,DSc(cid:2)InstituteofBiomaterialsandBiomedicalEngineering, UniversityofToronto,Toronto,Ontario,Canada LUCDOUAY,MD,PHD(cid:2) Unite´ derecherche´,Faculte´ deMe´decine,Universite´ Pierreet Marie Curie, Paris, France, and Service d’He´matologie Biologique, Assistance PubliqueHoˆpitauxdeParis,HoˆpitalArmandTrousseau,Paris,France SARAHEMINLI,PHD(cid:2)CenterforRegenerativeMedicineandCancerCenter, Massachusetts General Hospital, Harvard Medical School and Harvard Stem Cell Institute,Boston,MA,USA JANEENNIS,MASC (cid:2)InstituteofBiomaterialsandBiomedicalEngineering,Universityof Toronto,Toronto,Ontario,Canada KARLJ.L.FERNANDES,PHD(cid:2)De´partementdepathologieetbiologiecellulaire,Universite´ deMontre´al,Montre´al,Que´bec,Canada xi

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