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AIMS@JCU Outputs 2004 onwards Abdul Wahab MA; de Nys R; Whalan SW (2012) Closing the lifecycle for the sustainable aquaculture of the bath sponge Coscinoderma matthewsi. Aquaculture, 324-325. pp. 281-289 http://eprints.jcu.edu.au/22035 Adams VM; Pressey RL; Stoeckl NE (2012) Estimating land and conservation management costs: the first step in designing a stewardship program for the Northern Territory. Biological Conservation, 148 (1). pp. 44-53 http://eprints.jcu.edu.au/20245 Andutta FP; Kingsford MJ; Wolanski E (2012) 'Sticky water' enables the retention of larvae in a reef mosaic. Estuarine, Coastal and Shelf Science , 101. pp. 54-63 http://eprints.jcu.edu.au/22906 Angell AR; Pirozzi I; de Nys R; Paul N (2012) Feeding preferences and the nutritional value of tropical algae for the abalone Haliotis asinina. PLoS ONE, 7 (6). pp. 1-10 http://eprints.jcu.edu.au/22050 Athauda SB; Anderson TA; de Nys R (2012) Effect of rearing water temperature on protandrous sex inversion in cultured Asian Seabass (Lates calcarifer). General and Comparative Endocrinology, 175 (3). pp. 416-423 http://eprints.jcu.edu.au/20838 Baird AH; Campbell SJ; Fadli N; Hoey AS; Rudi E (2012) The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 5 (1). pp. 23-28 http://eprints.jcu.edu.au/22743 Bannister RJ; Battershill CN; de Nys R (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95 http://eprints.jcu.edu.au/22051 Barnes LM; Bellwood DR; Sheaves MJ; Tanner JK (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220 http://eprints.jcu.edu.au/19651 Bass AM; Bird MI; Munksgaard NC; Wurster CM (2012) ISO-CADICA: isotopic - continuous, automated dissolved inorganic carbon analyser. Rapid Communications in Mass Spectrometry, 26 (6). pp. 639-644 http://eprints.jcu.edu.au/21547 Beeden R; Maynard JA; Marshall PA; Heron SF; Willis BL (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13 http://eprints.jcu.edu.au/20191 Bellwood DR; Hoey AS; Hughes TP (2012) Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1733). pp. 1621-1629 http://eprints.jcu.edu.au/19586 Berumen ML; Trip EDL; Pratchett MS; Choat JH (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177 http://eprints.jcu.edu.au/20196 Bird MI; Ascough PL (2012) Isotopes in pyrogenic carbon: a review. Organic Geochemistry, 42 (12). pp. 1529-1539 http://eprints.jcu.edu.au/14961 Bird MI; Wurster CM; De Paula Silva PH; Paul N; de Nys R (2012) Algal biochar: effects and applications. GCB Bioenergy, 4 (1). pp. 61-69 http://eprints.jcu.edu.au/18985 Bonaldo RM; Welsh JQ; Bellwood DR (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272 http://eprints.jcu.edu.au/19399 Botte E; Jerry DR; King SC; Smith-Keune CR; Negri A (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393 http://eprints.jcu.edu.au/20192 Camus T; Zeng C (2012) Reproductive performance, survival and development of nauplii and copepodites, sex ratio and adult life expectancy of the harpacticoid copepod, Euterpina acutifrons, fed different microalgal diets. Aquaculture Research, 43 (8). pp. 1159-1169 http://eprints.jcu.edu.au/20146 Carl C; Poole AJ; Sexton FL; Vucko MJ; Vucko MJ; Whalan SW; de Nys R; de Nys R (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186 http://eprints.jcu.edu.au/22052 Chin A; Tobin AJ; Simpfendorfer CA; Heupel MR (2012) Reef sharks and inshore habitats: patterns of occurrence and implications for vulnerability. Marine Ecology Progress Series, 460. pp. 115-125 http://eprints.jcu.edu.au/23244 Cinner JE; McClanahan TR; Macneil MA; Graham N; Daw TM; Mukminin A; Feary DA; Rabearisoa AL; Wamukota A; jiddawi n; Campbell SJ; Baird AH; Hartley FA; Hamed S; Lahari R; Morove T; Kuange J (2012) Comanagement of coral reef social- ecological systems. Proceedings of the National Academy of Sciences of the United States of America, 109 (14). pp. 5219- 5222 http://eprints.jcu.edu.au/21700 Claydon JAB; McCormick MI; Jones GP (2012) Patterns of migration between feeding and spawning sites in a coral reef surgeonfish. Coral Reefs, 31 (1). pp. 77-87 http://eprints.jcu.edu.au/20234 Collier CJ; Waycott M; Ospina AG (2012) Responses of four Indo-West Pacific seagrass species to shading. Marine Pollution Bulletin, 65 (4-9). pp. 342-354 http://eprints.jcu.edu.au/18590 De Santis C; Gomes G; Jerry DR (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107 http://eprints.jcu.edu.au/23147 Devine BM; Munday PL; Jones GP (2012) Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia, 168 (1). pp. 269-276 http://eprints.jcu.edu.au/19612 Domenici P; Allen B; McCormick MI; Munday PL (2012) Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters, 8 (1). pp. 78-81 http://eprints.jcu.edu.au/19613 Donelson JM; Munday PL; McCormick MI; Pitcher CR (2012) Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change, 2. pp. 30-32 http://eprints.jcu.edu.au/20235 Edmunds rc; Smith-Keune CR; van Herwerden L; Fulton CJ; Jerry DR (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences, 74 (1). pp. 171-178 http://eprints.jcu.edu.au/17814 Ferrari MCO; McCormick MI; Munday PL; Meekan MG; Dixon DS; Lonnstedt OM; Chivers DP (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558 http://eprints.jcu.edu.au/22447 Figueiredo J; Connolly SR (2012) Dispersal-mediated coexistence under recruitment limitation and displacement competition. Ecological Modelling, 243. pp. 133-142 http://eprints.jcu.edu.au/22330 Figueiredo J; Baird AH; Cohen MF; Flot J-F; Kamiki TM; Meziane T; Tsuchyia M; Yamasaki H (2012) Ontogenetic change in the lipid and fatty acid composition of scleractinian coral larvae. Coral Reefs, pp. 613-619 http://eprints.jcu.edu.au/19726 Fitridge I; Dempster T; Guenther J; de Nys R (2012) The impact and control of biofouling in marine aquaculture: a review. Biofouling, 28 (7). pp. 649-669 http://eprints.jcu.edu.au/22250 Foster R; Bridge TCL; Bongaerts P (2012) The first record of Hippocampus denise (Syngnathidae) from Australia. Aqua: International Journal of Ichthyology, 18 (1). pp. 55-57 http://eprints.jcu.edu.au/22878 Guest JR; Baird AH; Maynard JA; Muttaqin E; Edwards A; Campbell SJ; Yewdall K; Affendi YA; Chou LM (2012) Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress. PLoS ONE, 7 (3). p. e33353 http://eprints.jcu.edu.au/22483 Guest JR; Baird AH; Goh BPL; Chou LM (2012) Sexual systems in scleractinian corals: an unusual pattern in the reef-building species Diploastrea heliopora. Coral Reefs, 31 (3). pp. 705-713 http://eprints.jcu.edu.au/22482 Harry AV; Morgan JAT; Ovenden JR; Tobin AJ; Welch DJ; Simpfendorfer CA (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, pp. 1-9 http://eprints.jcu.edu.au/23248 Hayakijkosol O; Owens L (2012) B2 or not B2: RNA interference reduces Macrobrachium rosenbergii nodavirus replication in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 326-329. pp. 40-45 http://eprints.jcu.edu.au/20036 Heupel MR; Simpfendorfer CA; Olsen EM; Moland E (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433. pp. 131-137 http://eprints.jcu.edu.au/23250 Higgins V; Dibden JL; Cocklin CR (2012) Market instruments and the neoliberalisation of land management in rural Australia. Geoforum, 43 (3). pp. 377-386 http://eprints.jcu.edu.au/15723 Hughes TP; Baird AH; Dinsdale EA; Moltschaniwskyj N; Pratchett MS; Tanner JE; Willis BL (2012) Assembly Rules of Reef Corals Are Flexible along a Steep Climatic Gradient. Current Biology, 22 (8). pp. 736-741 http://eprints.jcu.edu.au/22509 Jerry DR; Kvingedal R; Lind CE; Evans BS; Taylor JJU; Safari AE (2012) Donor-oyster derived heritability estimates and the effect of genotype × environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima. Aquaculture, 338-341. pp. 66-71 http://eprints.jcu.edu.au/23144 Kerry JT; Bellwood DR (2012) The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs, 31 (2). pp. 415-424 http://eprints.jcu.edu.au/20131 Knip DM; Heupel MR; Simpfendorfer CA (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784 http://eprints.jcu.edu.au/22153 Knip DM; Heupel MR; Simpfendorfer CA (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209 http://eprints.jcu.edu.au/22151 Knip DM; Heupel MR; Simpfendorfer CA (2012) To roam or to home: site fidelity in a tropical coastal shark. Marine Biology, 159 (8). pp. 1647-1657 http://eprints.jcu.edu.au/23247 Knip DM; Heupel MR; Simpfendorfer CA (2012) Mortality rates for two shark species occupying a shared coastal environment. Fisheries Research, 125-126. pp. 184-189 http://eprints.jcu.edu.au/22646 Kockler J; Kanakaraju D; Glass BD; Oelgemoeller M (2012) Photochemical and photocatalytic degradation of diclofenac and amoxicillin using natural and simulated sunlight. Journal of Sustainability Science and Management, 7 (1). pp. 23-29 http://eprints.jcu.edu.au/21642 Kockler J; Oelgemoeller M; Robertson SG; Glass BD (2012) Photostability of sunscreens. Journal of Photochemistry and Photobiology C: Photochemistry Reviews, 13 (1). pp. 91-110 http://eprints.jcu.edu.au/21065 Lawton RJ; Cole AJ; Berumen ML; Pratchett MS (2012) Geographic variation in resource use by specialist versus generalist butterflyfishes. Ecography, 35 (6). pp. 566-576 http://eprints.jcu.edu.au/20794 Lawton RJ; Pratchett MS; Berumen ML (2012) The use of specialisation indices to predict vulnerability of coral-feeding butterflyfishes to environmental change. Oikos, 121 (2). pp. 191-200 http://eprints.jcu.edu.au/20793 Lewis SE; Schaffelke B; Shaw M; Bainbridge ZT; Rohde K; Kennedy K; Davis AM; Masters BL; Devlin M; Mueller J; Brodie JE (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291 http://eprints.jcu.edu.au/20966 Lewis SE; Wust RAJ; Webster JM; Shields - Zhou GA; Renema W; Lough JM; Jacobsen G (2012) Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302. pp. 18-32 http://eprints.jcu.edu.au/20804 Lonnstedt OM; McCormick MI; Meekan MG; Ferrari MCO; Chivers DP (2012) Learn and live: predator experience and feeding history determines prey behaviour and survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1736). pp. 2091-2098 http://eprints.jcu.edu.au/22188 Lonnstedt OM; McCormick MI; Chivers DP (2012) Well-informed foraging: damage-released chemical cues of injured prey signal quality and size to predators. Oecologia, 168 (3). pp. 651-658 http://eprints.jcu.edu.au/20233 Manassa RP; McCormick MI (2012) Social learning and acquired recognition of a predator by a marine fish. Animal Cognition, 15 (4). pp. 559-565 http://eprints.jcu.edu.au/22450 McGinty EL; Zenger KR; Jones DB; Jerry DR (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33 http://eprints.jcu.edu.au/23140 McLeod IM; Parsons DM; Morrison MA; Le Port A; Taylor RB (2012) Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research, 63 (1). pp. 78-83 http://eprints.jcu.edu.au/19669 Milione M; Southgate PC (2012) Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction and Development, 56 (2). pp. 164-171 http://eprints.jcu.edu.au/20777 Moore B; Simpfendorfer CA; Newman SJN; Stapley JM; Allsop Q; Sellin MJ; Welch DJ (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: kingthreadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224 http://eprints.jcu.edu.au/23246 Morgan JAT; Harry AV; Welch DJ; Street R; White J; Geraghty PT; Macbeth WG; Tobin AJ; Simpfendorfer CA; Ovenden JR (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463 http://eprints.jcu.edu.au/20003 Moya A; Huisman L; Ball EB; Hayward DC; Grasso LC; Chua C; Woo HN; Gattuso J-P; Foret S; Miller DJ (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454 http://eprints.jcu.edu.au/23087 Murphy S; Saurel C; Morrissey A; Tobin J; Oelgemoeller M; Nolan K (2012) Photocatalytic activity of a porphyrin/TiO2 composite in the degradation of pharmaceuticals. Applied Catalysis B: Environmental, 119-120. pp. 156-165 http://eprints.jcu.edu.au/21604 Mustika PL; Birtles RA; Welters R; Marsh HD (2012) The economic influence of community-based dolphin watching on a local economy in a developing country: implications for conservation. Ecological Economics, 79. pp. 11-20 http://eprints.jcu.edu.au/22333 Nesa B; Baird AH; Harii S; Yakovleva IM; Hidaka M (2012) Algal symbionts increase DNA damage in coral planulae exposed to sunlight. Zoological Studies, 51 (1). pp. 12-17 http://eprints.jcu.edu.au/22510 Newton JR; De Santis C; Jerry DR (2012) The gene expression response of the catadromous perciform barramundi Lates calcarifer to an acute heat stress. Journal of Fish Biology, 81 (1). pp. 81-93 http://eprints.jcu.edu.au/23145 Norton SL; Wiley TR; Carlson JK; Frick AL; Poulakis GR; Simpfendorfer CA (2012) Designating critical habitat for juvenile endangered smalltooth sawfish in the United States. Marine and Coastal Fisheries: dynamics, management, and ecosystem science, 4 (1). pp. 473-480 http://eprints.jcu.edu.au/23238 Oelgemoeller M (2012) Highlights of Photochemical Reactions in Microflow Reactors. Chemical Engineering and Technology, 35 (7). pp. 1144-1152 http://eprints.jcu.edu.au/22058 Oelgemoeller M; Frank R; Lemmen P; Lenoir D; Lex J; Inoue Y (2012) Synthesis, structural characterization and photoisomerization of cyclic stilbenes. Tetrahedron, 68 (21). pp. 4048-4056 http://eprints.jcu.edu.au/21674 Olsen EM; Heupel MR; Simpfendorfer CA; Moland E (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562 http://eprints.jcu.edu.au/23239 Price-Rees SJ; Congdon B; Krockenberger AK (2012) Size delays female senescence in a medium sized marsupial: the effects of maternal traits on annual fecundity in the northern brown bandicoot (Isoodon macrourus). Austral Ecology, 37 (3). pp. 313-322 http://eprints.jcu.edu.au/20121 Saiz G; Bird MI; Domingues TF; Schrodt F; Schwarz M; Feldpausch TR; Veenendaal E; Djagbletey G; Hien F; Compaore H; Diallo A; Lloyd JJ (2012) Variation in soil carbon stocks and their determinants across a precipitation gradient in West Africa. Global Change Biology, 18 (5). pp. 1670-1683 http://eprints.jcu.edu.au/22159 Saunders RJ; Paul N; de Nys R; de Nys R (2012) Sustainable sources of biomass for bioremediation of heavy metals in waste water derived from coal-fired power generation. PLoS ONE, 7 (5). pp. 1-8 http://eprints.jcu.edu.au/22054 Shvydkiv O; Limburg C; Nolan K; Oelgemoeller M (2012) Synthesis of Juglone (5-Hydroxy-1,4-Naphthoquinone) in a Falling Film Microreactor. Journal of Flow Chemistry, 2 (2). pp. 52-55 http://eprints.jcu.edu.au/22056 Simpfendorfer CA; Olsen EM; Heupel MR; Moland E (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572 http://eprints.jcu.edu.au/22152 Taylor AC; Cocklin CR; BROWN R (2012) Fostering environmental champions: a process to build their capacity to drive change. Journal of Environmental Management, 98. pp. 84-97 http://eprints.jcu.edu.au/19841 Trevathan J; Johnstone R; Chiffings T; Atkinson IM; Bergmann N; Read WW; Theiss S; Myers TS; Stevens TC (2012) SEMAT – the next generation of inexpensive marine environmental monitoring and measurement systems. Sensors, 12 (7). pp. 9711- 9748 http://eprints.jcu.edu.au/22086 Tziouveli V; Smith G (2012) A comparison of the fatty acid profiles of adult tissues, and newly hatched, fed and starved Lysmata amboinensis larvae. Aquaculture Research, 43 (4). pp. 577-587 http://eprints.jcu.edu.au/20126 van de Water JAJ; van Oppen MJH; Willis BL (2012) Absence of skeleton deposition in juveniles of the scleractinian coral Acropora millepora. Coral Reefs, Online Fir. p. 0 http://eprints.jcu.edu.au/22885 Van Der Meer MH; Gardiner MG; Hobbs JA; Jones GP; van Herwerden L (2012) Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics, http://eprints.jcu.edu.au/19587 Van Der Meer MH; Gardiner MG; Hobbs JA; Pratchett MS; van Herwerden L (2012) Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics, http://eprints.jcu.edu.au/19588 Vucko MJ; King PC; Poole AJ; Carl C; Jahedi MZ; de Nys R (2012) Cold spray metal embedment: an innovative antifouling technology. Biofouling, 28 (3). pp. 239-248 http://eprints.jcu.edu.au/22055 Webster JM; Beaman RJ; Puga-Bernabéu Á; Ludman DM; Renema W; Wust RAJ; George N; Reimer PR; Jacobsen G; Moss P (2012) Late Pleistocene history of turbidite sedimentation in a submarine canyon off the northern Great Barrier Reef, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 331-332. pp. 75-89 http://eprints.jcu.edu.au/21671 Wei NV; Hsieh HJ; Dai C; Wallace CC; Baird AH; Chen CA (2012) Reproductive isolation among Acropora Species (Scleractinia: Acroporidae) in a marginal coral assemblage. Zoological Studies, 51 (1). pp. 85-92 http://eprints.jcu.edu.au/22511 Welsh JQ; Bellwood DR (2012) Spatial ecology of the steephead parrotfish (Chlorurus microrhinos): an evaluation using acoustic telemetry. Coral Reefs, 31 (1). pp. 55-65 http://eprints.jcu.edu.au/19668 Woolsey E; Bainbridge S; Kingsford MJ; Byrne MB (2012) Impacts of cyclone Hamish at One Tree Reef: integrating environmental and benthic habitat data. Marine Biology, 159 (4). pp. 793-803 http://eprints.jcu.edu.au/19733 Yang X; Wang J; Zhao L; Fan P; Wu X; Cheng Y; Zeng C (2012) Effects of elevated ambient histamine level on survival, growth, sexual maturity and tissue histamine accumulation of the mysis Neomysis awatschensis and Neomysis japonica Nakazawa. Aquaculture International, 20. pp. 347-356 http://eprints.jcu.edu.au/20120 Yates PM; Heupel MR; Tobin AJ; Simpfendorfer CA (2012) Diversity in young shark habitats provides the potential for portfolio effects. Marine Ecology Progress Series, 458. pp. 269-281 http://eprints.jcu.edu.au/23245 Yavorskyy A; Shvydkiv O; Limburg C; Nolan K; Delauré Y; Oelgemoeller M (2012) Photooxygenations in a bubble column reactor. Green Chemistry, 14. pp. 888-892 http://eprints.jcu.edu.au/21345 Young JW; Mckinnon AD; Ceccarelli DM; Brinkman RM; Bustamante RH; Cappo M; Dichmont C; Doherty P; Furnas MJ; Gledhill D; Griffiths S; Hutton T; Ridgway K; Smith D; Skewes T; Williams A; Richardson AJ (2012) Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and management. Reviews in Fish Biology and Fisheries, 22 (3). pp. 827-834 http://eprints.jcu.edu.au/20277 Zimmermann M; Leifeld J; Bird MI; Bird MI; Meir P (2012) Can composition and physical protection of soil organic matter explain soil respiration temperature sensitivity? Biogeochemistry, 107 (1-3). pp. 423- 436 http://eprints.jcu.edu.au/17758 Abbey E; Webster JM; Braga JC; Sugihara K; Wallace CC; Iryu Y; Potts D; Done TJ; Camoin G; Seard C (2011) Variation in deglacial coralgal assemblages and their paleoenvironmental significance: IODP Expedition 310, "Tahiti Sea Level". Global and Planetary Change, 76 (1). pp. 1-15 http://eprints.jcu.edu.au/21278 Abbey E; Webster JM; Beaman RJ (2011) Geomorphology of submerged reefs on the shelf edge of the Great Barrier Reef: the influence of oscillating Pleistocene sea-levels. Marine Geology, 288 (1-4). pp. 61-78 http://eprints.jcu.edu.au/19024 Abdul Wahab MA; de Nys R; Whalan SW (2011) Larval behaviour and settlement cues of a brooding coral reef sponge. Coral Reefs, 30 (2). pp. 451-460 http://eprints.jcu.edu.au/18786 Adams VM; Segan DB; Pressey RL (2011) How much does it cost to expand a protected area system? Some critical determining factors and ranges of costs for Queensland. PLoS ONE, 6. p. e25447 http://eprints.jcu.edu.au/20244 Adams VM; Mills M; Jupiter SJ; Pressey RL (2011) Improving social acceptability of marine protected area networks: a method for estimating opportunity costs to multiple gear types in both fished and currently unfished areas. Biological Conservation, 144. pp. 350-361 http://eprints.jcu.edu.au/20243 Aeby GS; Williams GJ; Franklin EC; Haapkyla AJ; Harvell CD; Neale SJ; Page CA; Raymundo L; Vargas-Ángel B; Willis BL; Work TM; Davy SK (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). pp. 1-9 http://eprints.jcu.edu.au/20175 Ainsworth TD; Wasmund K; Ukani L; Seneca F; Yellowlees D; Miller DJ; Leggat WP (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. pp. 1-9 http://eprints.jcu.edu.au/21209 Andutta FP; Ridd PV; Wolanski E (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305 http://eprints.jcu.edu.au/18230 Ascough PL; Bird MI; Francis SM; Thornton B; Midwood AJ; Scott AC; Apperley DC (2011) Variability in oxidative degradation of charcoal: Influence of production conditions and environmental exposure. Geochimica et Cosmochimica Acta, 75 (9). pp. 2361-2378 http://eprints.jcu.edu.au/21159 Ascough PL; Bird MI; Francis SM; Lebl T (2011) Alkali extraction of archaeological and geological charcoal: evidence for diagenetic degradation and formation of humic acids. Journal of Archaeological Science, 38 (1). pp. 69-78 http://eprints.jcu.edu.au/11903 Awruch CA; Simpfendorfer CA; Pankhurst NW (2011) Evaluation and use of a portable field kit for measuring whole-blood lactate in sharks. Marine and Freshwater Research, 62 (6). pp. 694-699 http://eprints.jcu.edu.au/18923 Awruch CA; Tobin AJ; Simpfendorfer CA; Welch DJ; Mapleston AJ; White J; Williams AJ; Stapley JM (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721 http://eprints.jcu.edu.au/18894 Baird AH; Blakeway DR; Hurley TJ; Stoddart JA (2011) Seasonality of coral reproduction in the Dampier Archipelago, northern Western Australia. Marine Biology, 158 (2). pp. 275-285 http://eprints.jcu.edu.au/18385 Ban NC; Adams VM; Pressey RL; Hicks J (2011) Promise and problems for estimating management costs of marine protected areas. Conservation Letters, 4 (3). pp. 241-252 http://eprints.jcu.edu.au/18041 Ban NC; Adams VM; Almany GR; Ban SS; Cinner JE; McCook LJ; Mills M; Pressey RL; White AT (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31 http://eprints.jcu.edu.au/20305 Bannister RJ; Hoogenboom M; Anthony KRN; Battershill CN; Whalan SW; Webster N; de Nys R (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95- 100 http://eprints.jcu.edu.au/20208 Basah S; Barr C; Keane D; Nolan K; Morrissey A; Oelgemoeller M; Tobin J (2011) On the adsorption/photodegradation of amoxicillin in aqueous solutions by an integrated photocatalytic adsorbent (IPCA): experimental studies and kinetics analysis. Photochemical & Photobiological Sciences, 10 (6). pp. 1014-1022 http://eprints.jcu.edu.au/17413 Bass AM; Bird MI; Liddell MJ; Nelson PN (2011) Fluvial dynamics of dissolved and particulate organic carbon during periodic one-flood events in a steep tropical rainforest catchment. Limnology and Oceanography, 56 (6). pp. 2282-2292 http://eprints.jcu.edu.au/19980 Bauman AG; Baird AH; Cavalcante GH (2011) Coral reproduction in the world's warmest reefs: southern Persian Gulf (Dubai, United Arab Emirates). Coral Reefs, 30 (2). pp. 405-413 http://eprints.jcu.edu.au/18386 Bay LK; Cumbo VR; Abrego D; Kool JT; Ainsworth TD; Willis BL (2011) Infection dynamics vary between Symbiodinium types and cell surface treatments during establishment of endosymbiosis with coral larvae. Diversity, 3 (3). pp. 356-374 http://eprints.jcu.edu.au/17683 Beattie AJ; Hay M; Magnusson WE; de Nys R; Smeathers J; Vincent JFV (2011) Ecology and bioprospecting. Austral Ecology, 36 (3). pp. 341-356 http://eprints.jcu.edu.au/20944 Bednarek AT; Cooper AB; Cresswell KA; Mangel M; Satterthwaite WH; Simpfendorfer CA; Wiedenmann JR (2011) The certainty of uncertainty in marine conservation and what to do about it. Bulletin of Marine Science, 87 (2). pp. 177-195 http://eprints.jcu.edu.au/18896 Bellwood DR; Choat JH (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554 http://eprints.jcu.edu.au/18815 Bennett S; Bellwood DR (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252 http://eprints.jcu.edu.au/18819 Berumen ML; Pratchett MS; Goodman BA (2011) Relative gut lengths of coral reef butterflyfishes (Pisces: Chaetodontidae). 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Coral Reefs, http://eprints.jcu.edu.au/22876 Brodie CR; Leng MJ; Casford JSL; Kendrick CP; Lloyd JM; Yongqiang Z; Bird MI (2011) Evidence for bias in C and N concentrations and δ13C composition of terrestrial and aquatic organic materials due to pre-analysis acid preparation methods. Chemical Geology, 282 (3-4). pp. 67-83 http://eprints.jcu.edu.au/21171 Brodie JE; Devlin M; Haynes D; Waterhouse RJ (2011) Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, 106 (2). pp. 281-302 http://eprints.jcu.edu.au/15384 Brooker ; Munday PL; Jones GP (2011) Coral obligate filefish masquerades as branching coral. Coral Reefs, 30 (3). p. 803 http://eprints.jcu.edu.au/19591 Cano Gomez A; Hoj L; Owens L; Andreakis N (2011) Multilocus sequence analysis provides basis for fast and reliable identification of Vibrio harveyi-related species and reveals previous misidentification of important marine pathogens. Systematic and Applied Microbiology, 34 (8). pp. 561-565 http://eprints.jcu.edu.au/19449 Cappo M; Stowar M; Syms C; Johansson C; Cooper T (2011) Fish-habitat associations in the region offshore from James price point - a rapid assessment using baited remote underwater video stations (BRUVS). Journal of the Royal Society of Western Australia, 94 (2). pp. 303-321 http://eprints.jcu.edu.au/21403 Carl C; Guenther J; Magne Sunde L (2011) Larval release and attachment modes of the hydroid Ectopleura larynx on aquaculture nets in Norway. Aquaculture Research, 42 (7). pp. 1056-1060 http://eprints.jcu.edu.au/21699 Carl C; Poole AJ; Vucko MJ; Williams MR; Whalan SW; de Nys R (2011) Optimising settlement assays of pediveligers and plantigrades of Mytilus galloprovincialis. Biofouling, 27 (8). pp. 859-868 http://eprints.jcu.edu.au/21081 Ceccarelli DM; Beger M; Kospartov MC; Richards ZT; Birrell C (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140 http://eprints.jcu.edu.au/20276 Ceccarelli DM; Richards ZT; Pratchett MS; Cvitanovic C (2011) Rapid increase in coral cover on an isolated coral reef, the Ashmore Reef National Nature Reserve, north-western Australia. Marine and Freshwater Research, 62 (10). pp. 1214-1220 http://eprints.jcu.edu.au/20274 Cerling TE; Wynn JG; Andanje SA; Bird MI; Korir DK; Levin NE; Mace W; Macharia AN; Quade J; Remien CH (2011) Woody cover and hominin environments in the past 6million years. Nature, 476. pp. 51-56 http://eprints.jcu.edu.au/20821   Cetina Heredia P; Connolly SR (2011) A simple approximation for larval retention around reefs. Coral Reefs, 30 (3). pp. 593- 605 http://eprints.jcu.edu.au/20182 Chambers LE; Devney CA; Congdon B; Dunlop N; Woehler EJ; Dann P (2011) Observed and predicted effects of climate on Australian seabirds. Emu, 111 (3). pp. 235-251 http://eprints.jcu.edu.au/20269 Chapman DD; Simpfendorfer CA; Wiley TR; Poulakis GR; Curtis C; Tringali M; Carlson JK; Feldheim KA (2011) Genetic diversity despite population collapse in a critically endangered marine fish: the smalltooth sawfish (Pristis pectinata). Journal of Heredity, 102 (6). pp. 643-652 http://eprints.jcu.edu.au/20886 Chong CD; Cole AJ; Pratchett MS; Willis BL (2011) Selective feeding by coral reef fishes on coral lesions associated with brown band and black band disease. Coral Reefs, 30 (2). pp. 473-481 http://eprints.jcu.edu.au/16338 Clague GE; Cheney KL; Goldizen AW; McCormick MI; Waldie PA; Grutter AS (2011) Long-term cleaner fish presence affects growth of a coral reef fish. Biology Letters, 7 (6). pp. 863-865 http://eprints.jcu.edu.au/20239 Clode PL; Lema AK; Saunders M; Weiner S (2011) Skeletal mineralogy of newly settling Acropora millepora (Scleractinia) coral recruits. Coral Reefs, 30 (1). pp. 1-8 http://eprints.jcu.edu.au/19982 Cole AJ; Lawton RJ; Pratchett MS; Wilson SK (2011) Chronic coral consumption by butterflyfishes. Coral Reefs, 30 (1). pp. 85-93 http://eprints.jcu.edu.au/15597 Cole AJ; Pratchett MS (2011) Effects of juvenile coral-feeding butterflyfishes on host corals. Coral Reefs, 30 (3). pp. 623-630 http://eprints.jcu.edu.au/21302 Cole AJ; Pratchett MS (2011) Inter-specific variation in susceptibility to grazing among common reef corals. Marine Ecology Progress Series, 422. pp. 155-164 http://eprints.jcu.edu.au/15598 Collier CJ; Uthicke S; Waycott M (2011) Thermal tolerance of two seagrass species at contrasting light levels: Implications for future distribution in the Great Barrier Reef. Limnology and Oceanography, 56 (6). pp. 2200-2210 http://eprints.jcu.edu.au/20650 Cowman PF; Bellwood DR (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24 (12). pp. 2543-2562 http://eprints.jcu.edu.au/19655 Cripps IL; Munday PL; McCormick MI (2011) Ocean acidification affects prey detection by a predatory reef fish. PLoS One, 6 (7). pp. 1-7 http://eprints.jcu.edu.au/18827 De Santis C; Wade NM; Jerry DR; Preston NP; Glencross BD; Sellars MJ (2011) Growing backwards: an inverted role for the shrimp ortholog of vertebrate myostatin and GDF11. Journal of Experimental Biology, 214 (16). pp. 2671-2677 http://eprints.jcu.edu.au/18091 De Santis C; Smith-Keune CR; Jerry DR (2011) Normalizing RT-qPCR data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the Finfish Lates calcarifer. Marine Biotechnology, 13 (2). pp. 170-180 http://eprints.jcu.edu.au/16666 De Santis C; Jerry DR (2011) Differential tissue-regulation of myostatin genes in the teleost fish Lates calcarifer in response to fasting. Evidence for functional differentiation. Molecular and Cellular Endocrinology, 335 (2). pp. 158-165 http://eprints.jcu.edu.au/18090 Deegan A; Cullen M; Oelgemoeller M; Nolan K; Tobin J; Morrissey A (2011) A SPE-LC-MS/MS method for the detection of low concentrations of pharmaceuticals in industrial waste streams. Analytical Letters, 44. pp. 2808-2820 http://eprints.jcu.edu.au/19361 Deegan AM; Shaik B; Nolan K; Urell K; Oelgemoeller M; Tobin J; Morrissey A (2011) Treatment options for wastewater effluents from pharmaceutical companies. International Journal of Environmental Science and Technology, 8 (3). pp. 649- 666 http://eprints.jcu.edu.au/17360 Devlin M (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. 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Coral Reefs, 30 (4). pp. 903-910 http://eprints.jcu.edu.au/19592 Emslie MJ; Pratchett MS; Cheal AJ (2011) Effects of different disturbance types on butterflyfish communities of Australia's Great Barrier Reef. Coral Reefs, 30 (2). pp. 461-471 http://eprints.jcu.edu.au/21163 Eriksen MS; Færevik G; Kittilsen S; McCormick MI; Damsgård B; Braithwaite VA; Braastad BO; Bakken M (2011) Stressed mothers - troubled offspring: a study of behavioural maternal effects in farmed Salmo salar. Journal of Fish Biology, 79 (3). pp. 575-586 http://eprints.jcu.edu.au/20218 Faichney IDE; Webster JM; Clague D; Braga JC; Renema W; Potts D (2011) The impact of the Mid-Pleistocene Transition on the composition of submerged reefs of the Maui Nui Complex, Hawaii. Palaeogeography, Palaeoclimatology, Palaeoecology, 299 (3-4). pp. 493-506 http://eprints.jcu.edu.au/15286 Feldpausch TR; Banin L; Phillips OL; Baker T; Lewis SL; Quesada CA; Affum-Baffoe K; Arets EJMM; Berry NJ; Bird MI; Brondizio ES; de Camargo P; Chave J; Djagbletey G; Domingues TF; Drescher M; Fearnside PM; França MB; Fyllas NM; Lopez-Gonzalez G; Hladik A; Higuchi N; Hunter MO; Iida Y; Salim K; Kassim AR; Keller M; Kemp JE; King DA; Lovett JC; Marimon BS; Marimon-Junior BH; Lenza E; Marshall AR; Metcalfe DJ; Mitchard ETA; Moran EF; Nelson BW; Nilus R; Nogueira EM; Palace M; Patiño S; Peh KS-H; Torello Raventos M; Reitsma JM; Saiz G; Schrodt F; Sonke B; Taedoumg HE; Tan S; White L; Wöll H; Lloyd J (2011) Height-diameter allometry of tropical forest trees. 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Journal of Fish Biology, 78 (2). pp. 659-666 http://eprints.jcu.edu.au/17352 Gaither MR; Bowen BW; Bordenave T; Rocha LA; Newman SJN; Arango Gomez JD; van Herwerden L; Craig MT (2011) Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle. BMC Evolutionary Biology, 11. pp. 1-15 http://eprints.jcu.edu.au/21366 Goatley CHR; Bellwood DR (2011) The roles of dimensionality, canopies and complexity in ecosystem monitoring. PLoS ONE, 6 (11). pp. 1-8 http://eprints.jcu.edu.au/19657 Graham N; Ainsworth TD; Baird AH; Ban NC; Bay LK; Cinner JE; Martins De Freitas DM; Diaz GA; Dornelas MAA; Dunn SR; Fidelman P; Foret S; Good T; Kool JT; Mallela J; Penin L; Pratchett MS; Williamson DH (2011) From microbes to people: tractable benefits of no-take areas for coral reefs. Oceanography and Marine Biology, 49. pp. 105-136 http://eprints.jcu.edu.au/17574 Grasso LC; Negri A; Foret S; Saint R; Hayward DC; Miller DJ; Ball EB (2011) The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis. Developmental Biology, 353 (2). pp. 411-419 http://eprints.jcu.edu.au/18097 Grech AM; Sheppard JK; Marsh HD (2011) Informing species conservation at multiple scales using data collected for marine mammal stock assessments. PLoS ONE, 6 (3). pp. 1-8 http://eprints.jcu.edu.au/16389 Grech AM; Coles R; Marsh HD (2011) A broad-scale assessment of the risk to coastal seagrasses from cumulative threats. Marine Policy, 35 (5). pp. 560-567 http://eprints.jcu.edu.au/18075 Gribben PE; Jeffs AG; de Nys R; Steinberg PD (2011) Relative importance of natural cues and substrate morphology for settlement of the New Zealand Greenshell™ mussel, Perna canaliculus. 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Chin A; Tobin AJ; Simpfendorfer CA; Heupel MR (2012) Reef sharks and inshore habitats: patterns .. endangered smalltooth sawfish in the United States. juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region.
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