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PLoS ONE, 7 (6). pp. 1-10 http://eprints.jcu.edu.au/22050 Athauda SB; Anderson TA; de Nys R (2012) Effect of rearing water temperature on protandrous sex inversion in cultured Asian Seabass (Lates calcarifer). General and Comparative Endocrinology, 175 (3). pp. 416-423 http://eprints.jcu.edu.au/20838 Baird AH; Campbell SJ; Fadli N; Hoey AS; Rudi E (2012) The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 5 (1). pp. 23-28 http://eprints.jcu.edu.au/22743 Bannister RJ; Battershill CN; de Nys R (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95 http://eprints.jcu.edu.au/22051 Barnes LM; Bellwood DR; Sheaves MJ; Tanner JK (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220 http://eprints.jcu.edu.au/19651 Bass AM; Bird MI; Munksgaard NC; Wurster CM (2012) ISO-CADICA: isotopic - continuous, automated dissolved inorganic carbon analyser. Rapid Communications in Mass Spectrometry, 26 (6). pp. 639-644 http://eprints.jcu.edu.au/21547 Beeden R; Maynard JA; Marshall PA; Heron SF; Willis BL (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13 http://eprints.jcu.edu.au/20191 Bellwood DR; Hoey AS; Hughes TP (2012) Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1733). pp. 1621-1629 http://eprints.jcu.edu.au/19586 Berumen ML; Trip EDL; Pratchett MS; Choat JH (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177 http://eprints.jcu.edu.au/20196 Bird MI; Ascough PL (2012) Isotopes in pyrogenic carbon: a review. Organic Geochemistry, 42 (12). pp. 1529-1539 http://eprints.jcu.edu.au/14961 Bird MI; Wurster CM; De Paula Silva PH; Paul N; de Nys R (2012) Algal biochar: effects and applications. GCB Bioenergy, 4 (1). pp. 61-69 http://eprints.jcu.edu.au/18985 Bonaldo RM; Welsh JQ; Bellwood DR (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272 http://eprints.jcu.edu.au/19399 Botte E; Jerry DR; King SC; Smith-Keune CR; Negri A (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393 http://eprints.jcu.edu.au/20192 Camus T; Zeng C (2012) Reproductive performance, survival and development of nauplii and copepodites, sex ratio and adult life expectancy of the harpacticoid copepod, Euterpina acutifrons, fed different microalgal diets. Aquaculture Research, 43 (8). pp. 1159-1169 http://eprints.jcu.edu.au/20146 Carl C; Poole AJ; Sexton FL; Vucko MJ; Vucko MJ; Whalan SW; de Nys R; de Nys R (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186 http://eprints.jcu.edu.au/22052 Chin A; Tobin AJ; Simpfendorfer CA; Heupel MR (2012) Reef sharks and inshore habitats: patterns of occurrence and implications for vulnerability. Marine Ecology Progress Series, 460. pp. 115-125 http://eprints.jcu.edu.au/23244 Cinner JE; McClanahan TR; Macneil MA; Graham N; Daw TM; Mukminin A; Feary DA; Rabearisoa AL; Wamukota A; jiddawi n; Campbell SJ; Baird AH; Hartley FA; Hamed S; Lahari R; Morove T; Kuange J (2012) Comanagement of coral reef social- ecological systems. Proceedings of the National Academy of Sciences of the United States of America, 109 (14). pp. 5219- 5222 http://eprints.jcu.edu.au/21700 Claydon JAB; McCormick MI; Jones GP (2012) Patterns of migration between feeding and spawning sites in a coral reef surgeonfish. Coral Reefs, 31 (1). pp. 77-87 http://eprints.jcu.edu.au/20234 Collier CJ; Waycott M; Ospina AG (2012) Responses of four Indo-West Pacific seagrass species to shading. Marine Pollution Bulletin, 65 (4-9). pp. 342-354 http://eprints.jcu.edu.au/18590 De Santis C; Gomes G; Jerry DR (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107 http://eprints.jcu.edu.au/23147 Devine BM; Munday PL; Jones GP (2012) Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia, 168 (1). pp. 269-276 http://eprints.jcu.edu.au/19612 Domenici P; Allen B; McCormick MI; Munday PL (2012) Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters, 8 (1). pp. 78-81 http://eprints.jcu.edu.au/19613 Donelson JM; Munday PL; McCormick MI; Pitcher CR (2012) Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change, 2. pp. 30-32 http://eprints.jcu.edu.au/20235 Edmunds rc; Smith-Keune CR; van Herwerden L; Fulton CJ; Jerry DR (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences, 74 (1). pp. 171-178 http://eprints.jcu.edu.au/17814 Ferrari MCO; McCormick MI; Munday PL; Meekan MG; Dixon DS; Lonnstedt OM; Chivers DP (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558 http://eprints.jcu.edu.au/22447 Figueiredo J; Connolly SR (2012) Dispersal-mediated coexistence under recruitment limitation and displacement competition. Ecological Modelling, 243. pp. 133-142 http://eprints.jcu.edu.au/22330 Figueiredo J; Baird AH; Cohen MF; Flot J-F; Kamiki TM; Meziane T; Tsuchyia M; Yamasaki H (2012) Ontogenetic change in the lipid and fatty acid composition of scleractinian coral larvae. Coral Reefs, pp. 613-619 http://eprints.jcu.edu.au/19726 Fitridge I; Dempster T; Guenther J; de Nys R (2012) The impact and control of biofouling in marine aquaculture: a review. Biofouling, 28 (7). pp. 649-669 http://eprints.jcu.edu.au/22250 Foster R; Bridge TCL; Bongaerts P (2012) The first record of Hippocampus denise (Syngnathidae) from Australia. Aqua: International Journal of Ichthyology, 18 (1). pp. 55-57 http://eprints.jcu.edu.au/22878 Guest JR; Baird AH; Maynard JA; Muttaqin E; Edwards A; Campbell SJ; Yewdall K; Affendi YA; Chou LM (2012) Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress. PLoS ONE, 7 (3). p. e33353 http://eprints.jcu.edu.au/22483 Guest JR; Baird AH; Goh BPL; Chou LM (2012) Sexual systems in scleractinian corals: an unusual pattern in the reef-building species Diploastrea heliopora. Coral Reefs, 31 (3). pp. 705-713 http://eprints.jcu.edu.au/22482 Harry AV; Morgan JAT; Ovenden JR; Tobin AJ; Welch DJ; Simpfendorfer CA (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, pp. 1-9 http://eprints.jcu.edu.au/23248 Hayakijkosol O; Owens L (2012) B2 or not B2: RNA interference reduces Macrobrachium rosenbergii nodavirus replication in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 326-329. pp. 40-45 http://eprints.jcu.edu.au/20036 Heupel MR; Simpfendorfer CA; Olsen EM; Moland E (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433. pp. 131-137 http://eprints.jcu.edu.au/23250 Higgins V; Dibden JL; Cocklin CR (2012) Market instruments and the neoliberalisation of land management in rural Australia. Geoforum, 43 (3). pp. 377-386 http://eprints.jcu.edu.au/15723 Hughes TP; Baird AH; Dinsdale EA; Moltschaniwskyj N; Pratchett MS; Tanner JE; Willis BL (2012) Assembly Rules of Reef Corals Are Flexible along a Steep Climatic Gradient. Current Biology, 22 (8). pp. 736-741 http://eprints.jcu.edu.au/22509 Jerry DR; Kvingedal R; Lind CE; Evans BS; Taylor JJU; Safari AE (2012) Donor-oyster derived heritability estimates and the effect of genotype × environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima. Aquaculture, 338-341. pp. 66-71 http://eprints.jcu.edu.au/23144 Kerry JT; Bellwood DR (2012) The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs, 31 (2). pp. 415-424 http://eprints.jcu.edu.au/20131 Knip DM; Heupel MR; Simpfendorfer CA (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784 http://eprints.jcu.edu.au/22153 Knip DM; Heupel MR; Simpfendorfer CA (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209 http://eprints.jcu.edu.au/22151 Knip DM; Heupel MR; Simpfendorfer CA (2012) To roam or to home: site fidelity in a tropical coastal shark. Marine Biology, 159 (8). pp. 1647-1657 http://eprints.jcu.edu.au/23247 Knip DM; Heupel MR; Simpfendorfer CA (2012) Mortality rates for two shark species occupying a shared coastal environment. Fisheries Research, 125-126. pp. 184-189 http://eprints.jcu.edu.au/22646 Kockler J; Kanakaraju D; Glass BD; Oelgemoeller M (2012) Photochemical and photocatalytic degradation of diclofenac and amoxicillin using natural and simulated sunlight. Journal of Sustainability Science and Management, 7 (1). pp. 23-29 http://eprints.jcu.edu.au/21642 Kockler J; Oelgemoeller M; Robertson SG; Glass BD (2012) Photostability of sunscreens. Journal of Photochemistry and Photobiology C: Photochemistry Reviews, 13 (1). pp. 91-110 http://eprints.jcu.edu.au/21065 Lawton RJ; Cole AJ; Berumen ML; Pratchett MS (2012) Geographic variation in resource use by specialist versus generalist butterflyfishes. Ecography, 35 (6). pp. 566-576 http://eprints.jcu.edu.au/20794 Lawton RJ; Pratchett MS; Berumen ML (2012) The use of specialisation indices to predict vulnerability of coral-feeding butterflyfishes to environmental change. 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Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1736). pp. 2091-2098 http://eprints.jcu.edu.au/22188 Lonnstedt OM; McCormick MI; Chivers DP (2012) Well-informed foraging: damage-released chemical cues of injured prey signal quality and size to predators. Oecologia, 168 (3). pp. 651-658 http://eprints.jcu.edu.au/20233 Manassa RP; McCormick MI (2012) Social learning and acquired recognition of a predator by a marine fish. Animal Cognition, 15 (4). pp. 559-565 http://eprints.jcu.edu.au/22450 McGinty EL; Zenger KR; Jones DB; Jerry DR (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33 http://eprints.jcu.edu.au/23140 McLeod IM; Parsons DM; Morrison MA; Le Port A; Taylor RB (2012) Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research, 63 (1). pp. 78-83 http://eprints.jcu.edu.au/19669 Milione M; Southgate PC (2012) Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction and Development, 56 (2). pp. 164-171 http://eprints.jcu.edu.au/20777 Moore B; Simpfendorfer CA; Newman SJN; Stapley JM; Allsop Q; Sellin MJ; Welch DJ (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: kingthreadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224 http://eprints.jcu.edu.au/23246 Morgan JAT; Harry AV; Welch DJ; Street R; White J; Geraghty PT; Macbeth WG; Tobin AJ; Simpfendorfer CA; Ovenden JR (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. 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Ecological Economics, 79. pp. 11-20 http://eprints.jcu.edu.au/22333 Nesa B; Baird AH; Harii S; Yakovleva IM; Hidaka M (2012) Algal symbionts increase DNA damage in coral planulae exposed to sunlight. Zoological Studies, 51 (1). pp. 12-17 http://eprints.jcu.edu.au/22510 Newton JR; De Santis C; Jerry DR (2012) The gene expression response of the catadromous perciform barramundi Lates calcarifer to an acute heat stress. Journal of Fish Biology, 81 (1). pp. 81-93 http://eprints.jcu.edu.au/23145 Norton SL; Wiley TR; Carlson JK; Frick AL; Poulakis GR; Simpfendorfer CA (2012) Designating critical habitat for juvenile endangered smalltooth sawfish in the United States. Marine and Coastal Fisheries: dynamics, management, and ecosystem science, 4 (1). pp. 473-480 http://eprints.jcu.edu.au/23238 Oelgemoeller M (2012) Highlights of Photochemical Reactions in Microflow Reactors. Chemical Engineering and Technology, 35 (7). pp. 1144-1152 http://eprints.jcu.edu.au/22058 Oelgemoeller M; Frank R; Lemmen P; Lenoir D; Lex J; Inoue Y (2012) Synthesis, structural characterization and photoisomerization of cyclic stilbenes. Tetrahedron, 68 (21). pp. 4048-4056 http://eprints.jcu.edu.au/21674 Olsen EM; Heupel MR; Simpfendorfer CA; Moland E (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562 http://eprints.jcu.edu.au/23239 Price-Rees SJ; Congdon B; Krockenberger AK (2012) Size delays female senescence in a medium sized marsupial: the effects of maternal traits on annual fecundity in the northern brown bandicoot (Isoodon macrourus). 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Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572 http://eprints.jcu.edu.au/22152 Taylor AC; Cocklin CR; BROWN R (2012) Fostering environmental champions: a process to build their capacity to drive change. Journal of Environmental Management, 98. pp. 84-97 http://eprints.jcu.edu.au/19841 Trevathan J; Johnstone R; Chiffings T; Atkinson IM; Bergmann N; Read WW; Theiss S; Myers TS; Stevens TC (2012) SEMAT – the next generation of inexpensive marine environmental monitoring and measurement systems. Sensors, 12 (7). pp. 9711- 9748 http://eprints.jcu.edu.au/22086 Tziouveli V; Smith G (2012) A comparison of the fatty acid profiles of adult tissues, and newly hatched, fed and starved Lysmata amboinensis larvae. Aquaculture Research, 43 (4). pp. 577-587 http://eprints.jcu.edu.au/20126 van de Water JAJ; van Oppen MJH; Willis BL (2012) Absence of skeleton deposition in juveniles of the scleractinian coral Acropora millepora. Coral Reefs, Online Fir. p. 0 http://eprints.jcu.edu.au/22885 Van Der Meer MH; Gardiner MG; Hobbs JA; Jones GP; van Herwerden L (2012) Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics, http://eprints.jcu.edu.au/19587 Van Der Meer MH; Gardiner MG; Hobbs JA; Pratchett MS; van Herwerden L (2012) Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics, http://eprints.jcu.edu.au/19588 Vucko MJ; King PC; Poole AJ; Carl C; Jahedi MZ; de Nys R (2012) Cold spray metal embedment: an innovative antifouling technology. 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Biological Conservation, 144. pp. 350-361 http://eprints.jcu.edu.au/20243 Aeby GS; Williams GJ; Franklin EC; Haapkyla AJ; Harvell CD; Neale SJ; Page CA; Raymundo L; Vargas-Ángel B; Willis BL; Work TM; Davy SK (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). pp. 1-9 http://eprints.jcu.edu.au/20175 Ainsworth TD; Wasmund K; Ukani L; Seneca F; Yellowlees D; Miller DJ; Leggat WP (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. pp. 1-9 http://eprints.jcu.edu.au/21209 Andutta FP; Ridd PV; Wolanski E (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. 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