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International Journal o f Molecular Sciences Plant Mitochondria Edited by Nicolas L. Taylor Printed Edition of the Special Issue Published in International Journal of Molecular Sciences www.mdpi.com/journal/ijms Plant Mitochondria Plant Mitochondria SpecialIssueEditor NicolasL.Taylor MDPI•Basel•Beijing•Wuhan•Barcelona•Belgrade SpecialIssueEditor NicolasL.Taylor TheUniversityofWesternAustralia Australia EditorialOffice MDPI St.Alban-Anlage66 4052Basel,Switzerland This is a reprint of articles from the Special Issue published online in the open access journal InternationalJournalofMolecularSciences (ISSN 1422-0067) from 2017 to 2018 (available at: https: //www.mdpi.com/journal/ijms/specialissues/plantmitochondria) Forcitationpurposes,citeeacharticleindependentlyasindicatedonthearticlepageonlineandas indicatedbelow: LastName,A.A.; LastName,B.B.; LastName,C.C.ArticleTitle. JournalNameYear,ArticleNumber, PageRange. ISBN978-3-03897-550-2(Pbk) ISBN978-3-03897-551-9(PDF) (cid:2)c 2019bytheauthors. ArticlesinthisbookareOpenAccessanddistributedundertheCreative Commons Attribution (CC BY) license, which allows users to download, copy and build upon publishedarticles,aslongastheauthorandpublisherareproperlycredited,whichensuresmaximum disseminationandawiderimpactofourpublications. ThebookasawholeisdistributedbyMDPIunderthetermsandconditionsoftheCreativeCommons licenseCCBY-NC-ND. Contents AbouttheSpecialIssueEditor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . vii Prefaceto”PlantMitochondria” . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix NicolasL.Taylor EditorialforSpecialIssue“PlantMitochondria” Reprintedfrom:Int.J.Mol.Sci.2018,19,3849,doi:10.3390/ijms19123849 . . . . . . . . . . . . . . 1 Shin-ichiArimura,RinaKurisu,HajimeSugaya,NaokiKadoyaandNobuhiroTsutsumi ColdTreatmentInducesTransientMitochondrialFragmentationinArabidopsisthalianainaWay thatRequiresDRP3AbutnotELM1oranELM1-LikeHomologue,ELM2 Reprintedfrom:Int.J.Mol.Sci.2017,18,2161,doi:10.3390/ijms18102161 . . . . . . . . . . . . . . 7 PedroRobles,SergioNavarro-Cartagena,AlmudenaFerrańdez-Ayela,EvaNuń˜ez-Delegido andV´ıctorQuesada The Characterization of Arabidopsis mterf6 Mutants Reveals a New Role for mTERF6 in TolerancetoAbioticStress Reprintedfrom:Int.J.Mol.Sci.2018,19,2388,doi:10.3390/ijms19082388 . . . . . . . . . . . . . . 20 MichałRurek,MagdalenaCzołpin´ska,TomaszAndrzejPawłowski,WłodzimierzKrzesin´ski andTomaszSpiz˙ewski ColdandHeatStressDiverselyAlterBothCauliflowerRespirationandDistinctMitochondrial ProteinsIncludingOXPHOSComponentsandMatrixEnzymes Reprintedfrom:Int.J.Mol.Sci.2018,19,877,doi:10.3390/ijms19030877. . . . . . . . . . . . . . . 31 Michał Rurek, Magdalena Czołpi ńska, Tomasz Andrzej Pawłowski, Aleksandra Maria Staszak, Witold Nowak, Włodzimierz Krzesi ńsk iand Tomasz Spiz˙ewski Mitochondrial Biogenesis in Diverse Cauliflower Cultivars under Mild and Severe Drought. Impaired Coordination of Selected Transcript and Proteomic Responses, and Regulation of Various Multifunctional Proteins Reprintedfrom:Int.J.Mol.Sci.2018,19,1130,doi:10.3390/ijms19041130 . . . . . . . . . . . . . . 65 AntjeReddemannandRenateHorn RecombinationEventsInvolvingtheatp9GeneAreAssociatedwithMaleSterilityofCMSPET2 inSunflower Reprintedfrom:Int.J.Mol.Sci.2018,19,806,doi:10.3390/ijms19030806. . . . . . . . . . . . . . . 94 HelenaSˇtorchova´ TheRoleofNon-CodingRNAsinCytoplasmicMaleSterilityinFloweringPlants Reprintedfrom:Int.J.Mol.Sci.2017,18,2429,doi:10.3390/ijms18112429 . . . . . . . . . . . . . . 111 NatanaelMansilla,SofiaRacca,DianaE.Gras,DanielH.GonzalezandElinaWelchen TheComplexityofMitochondrialComplexIV:AnUpdateofCytochromecOxidaseBiogenesis inPlants Reprintedfrom:Int.J.Mol.Sci.2018,19,662,doi:10.3390/ijms19030662. . . . . . . . . . . . . . . 124 Anna Podgórska,M onika Ostaszewska-Bugajska, Agata Tarnowska, Maria Burian, Klaudia Borysiuk, Per Gardeström and Boz˙ena Szal Nitrogen Source Dependent Changes in Central Sugar Metabolism Maintain Cell Wall Assembly in Mitochondrial Complex I-Defective frostbite1 and Secondarily Affect Programmed Cell Death Reprintedfrom:Int.J.Mol.Sci.2018,19,2206,doi:10.3390/ijms19082206 . . . . . . . . . . . . . . 158 v IsabelVelada,DariuszGrzebelus,DianaLousa,ClaúdioM.Soares,EliseteSantosMacedo, AugustoPeixe,BirgitArnholdt-SchmittandHe´liaG.Cardoso AOX1-SubfamilyGeneMembersinOleaeuropaeacv. “GalegaVulgar”—GeneCharacterization andExpressionofTranscriptsduringIBA-InducedInVitroAdventitiousRooting Reprintedfrom:Int.J.Mol.Sci.2018,19,597,doi:10.3390/ijms19020597. . . . . . . . . . . . . . . 183 VajiraR.Wanniarachchi,LetteeDametto,CrystalSweetman,YuriShavrukov,DavidA.Day, ColinL.D.JenkinsandKathleenL.Soole Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and TheirResponsetoStress Reprintedfrom:Int.J.Mol.Sci.2018,19,915,doi:10.3390/ijms19030915. . . . . . . . . . . . . . . 208 Anna Podgo´rska, Monika Ostaszewska-Bugajska, Klaudia Borysiuk, Agata Tarnowska, MonikaJakubiak,MariaBurian,AllanG.RasmussonandBoz˙enaSzal Suppression of External NADPH Dehydrogenase—NDB1 in Arabidopsis thaliana Confers ImprovedTolerancetoAmmoniumToxicityviaEfficientGlutathione/RedoxMetabolism Reprintedfrom:Int.J.Mol.Sci.2018,19,1412,doi:10.3390/ijms19051412 . . . . . . . . . . . . . . 230 Marie-He´le`ne Avelange-Macherel, Adrien Candat, Martine Neveu, Dimitri Tolleter and DavidMacherel DecodingtheDivergentSubcellularLocationofTwoHighlySimilarParalogousLEAProteins Reprintedfrom:Int.J.Mol.Sci.2018,19,1620,doi:10.3390/ijms19061620 . . . . . . . . . . . . . . 255 MagdalenaOpalin´ska,KatarzynaParysandHannaJan´ska Identification of Physiological Substrates and Binding Partners of the Plant Mitochondrial ProteaseFTSH4bytheTrappingApproach Reprintedfrom:Int.J.Mol.Sci.2017,18,2455,doi:10.3390/ijms18112455 . . . . . . . . . . . . . . 271 NanZhao,YumeiWangandJinpingHua TheRolesofMitochondrioninIntergenomicGeneTransferinPlants:ASourceandaPool Reprintedfrom:Int.J.Mol.Sci.2018,19,547,doi:10.3390/ijms19020547. . . . . . . . . . . . . . . 282 Alicja Dolzblasz, Edyta M. Gola, Katarzyna Sokołowska, Elwira Smakowska-Luzan, AdrianaTwardawskaandHannaJanska ImpairmentofMeristemProliferationinPlantsLackingtheMitochondrialProteaseAtFTSH4 Reprintedfrom:Int.J.Mol.Sci.2018,19,853,doi:10.3390/ijms19030853. . . . . . . . . . . . . . . 298 RenukaKolli,Ju¨rgenSollandChrisCarrie PlantMitochondrialInnerMembraneProteinInsertion Reprintedfrom:Int.J.Mol.Sci.2018,19,641,doi:10.3390/ijms19020641. . . . . . . . . . . . . . . 312 PedroRoblesandVıćtorQuesada EmergingRolesofMitochondrialRibosomalProteinsinPlantDevelopment Reprintedfrom:Int.J.Mol.Sci.2017,18,2595,doi:10.3390/ijms18122595 . . . . . . . . . . . . . . 333 MichalZmudjak,SofiaShevtsov,LaureD.Sultan,IdoKerenandOrenOstersetzer-Biran Analysis of the Roles of the Arabidopsis nMAT2 and PMH2 Proteins Provided with New InsightsintotheRegulationofGroupIIIntronSplicinginLand-PlantMitochondria Reprintedfrom:Int.J.Mol.Sci.2017,18,2428,doi:10.3390/ijms18112428 . . . . . . . . . . . . . . 345 ChunliMao,YanqiaoZhu,HangCheng,HuifangYan,LiyuanZhao,JiaTang,XiqingMaand PeishengMao NitricOxideRegulatesSeedlingGrowthandMitochondrialResponsesinAgedOatSeeds Reprintedfrom:Int.J.Mol.Sci.2018,19,1052,doi:10.3390/ijms19041052 . . . . . . . . . . . . . . 370 vi About the Special Issue Editor Nicolas Taylor is a Senior Lecturer in the ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences and The Institute of Agriculture at The University of Western Australia. He completed his undergraduate studies and MSc at Massey University, New Zealand and in 2000 moved to The University of Western Australia (UWA) to undertake his PhD. After his PhD, he was awarded a European Molecular Biology Organization Long Term Fellowship to study at the Department of Plant Sciences at the University of Oxford, UK. He was recruited back to UWA in 2006 to the newly established ARC Centre of Excellence in Plant Energy Biology. Here, he has applied and developed a wide range of quantitative proteomics approaches and used these in a number of research projects. He is particularly well known for his pioneering work in the development of peptide selective reaction monitoring (SRM) mass spectrometry approaches in plants and the development of tools and resources to enable this analysis. He has been awarded Australian Research Council Post-Doctoral and Future Fellowships at UWA and in 2015, he was awarded the Robson Medal for Research Excellence in Agriculture and Related Areas. vii Preface to ”Plant Mitochondria” The primary function of mitochondria is respiration, where the catabolism of substrates is coupled to ATP synthesis via oxidative phosphorylation. In plants, mitochondrial composition is relatively complex and flexible and has specific pathways to support photosynthetic processes in illuminated leaves. Plant mitochondria also play important roles in a variety of cellular processes associated with carbon, nitrogen, phosphorus, and sulfur metabolism. Research on plant mitochondria has rapidly developed in the last few decades with the availability of the genomesequencesforawiderangeofmodelandcropplants.Recentprominentthemesinplant mitochondrialresearchincludelinkingmitochondrialcompositiontoenvironmentalstressresponses, and how this oxidative stress impacts on the plant mitochondrial function. Similarly, interest in the signaling capacity of mitochondria, the role of reactive oxygen species, and retrograde and anterograde signaling has revealed the transcriptional changes of stress responsive genes as a frameworktodefinespecificsignalsemanatingtoandfromthemitochondrion.Therehasalsobeen considerableinterestintheuniqueRNAmetabolicprocessesinplantmitochondria,includingRNA transcription, RNA editing, the splicing of group I and group II introns and RNA degradation andtranslation. Despitetheiridentificationmorethan100yearsago,plantmitochondriaremaina significantareaofresearchintheplantsciences. NicolasL.Taylor SpecialIssueEditor ix