Plant Microbiome: Stress Response

389 Pages·2018·7.41 MB·English

by  Dilfuza Egamberdieva

Microorganisms for Sustainability 5
Series Editor: Naveen Kumar Arora
Dilfuza Egamberdieva
Parvaiz Ahmad Editors
Plant
Microbiome:
Stress
Response
Microorganisms for Sustainability
Volume 5
Series editor
Naveen Kumar Arora, Environmental Microbiology, School for Environmental
Science, Babasaheb Bhimrao Ambedkar University, Lucknow, Uttar Pradesh, India
More information about this series at http://www.springer.com/series/14379
Dilfuza Egamberdieva • Parvaiz Ahmad
Editors
Plant Microbiome: Stress
Response
Editors
Dilfuza Egamberdieva Parvaiz Ahmad
Faculty of Biology Department of Botany and Microbiology
National University of Uzbekistan King Saud University
Tashkent, Uzbekistan Riyadh, Riyadh, Saudi Arabia
ISSN 2512-1901 ISSN 2512-1898 (electronic)
Microorganisms for Sustainability
ISBN 978-981-10-5513-3 ISBN 978-981-10-5514-0 (eBook)
https://doi.org/10.1007/978-981-10-5514-0
Library of Congress Control Number: 2017963993
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Foreword
Abiotic and biotic stresses affect the productivity and quality of agroecosystems
around the globe. Indiscriminate use of chemicals to enhance the crop productivity
has further aggravated the problem. The agroecosystems not only have become
more and more polluted but also have become stressed due to the unhealthy prac-
tices. The use of chemicals such as pesticides and fertilizers have made the soil
saline, polluted water bodies, and also resulted in the loss of biodiversity besides
being dangerous to humans and other organisms. Several plant beneficial microbes
have been affected by the uncontrolled use of harmful chemicals in fields. Although
these chemicals resulted in the green revolution, scientists, agriculturists, and gov-
ernments now know the adverse effects of the chemical-induced green revolution.
The problem has been further worsened due to the impact of climate change result-
ing from urbanization, industrialization, and the ever-increasing human population.
One of the major challenges faced by mankind is to feed the swelling human popu-
lation. Food and nutritional security is one of the biggest tasks of the present time.
The task becomes even more challenging because the sustainability and diversity of
the agroecosystems have to be maintained. The solution is the use of green
approaches in agriculture and lesser reliance on the harmful chemicals. Plant benefi-
cial microbes are the symbiotic partners of almost all the plant species known and
can be exploited to enhance the quality and quantity of food production. These
microorganisms also known as plant growth-promoting microbes are the only alter-
natives for the harmful chemicals. Already, the use of biofertilizers and biopesti-
cides is being encouraged around the globe. However, we still need to understand
the mechanisms using latest biotechnological tools to properly utilize these useful
microbes in enhancing the productivity and maintaining the health of the plant.
Researchers working in the area of agriculture microbiology and biotechnology
know that the next “green revolution” which will provide healthy and balanced diet
simultaneously maintaining the sustainability of agroecosystems will be through
the use of these plant beneficial microbes.
Plant beneficial microbes interact with the plant and help it in its survival and
ability to fight the biotic and abiotic stresses. These microbes also known as “plant
microbiome” provide nutrients to the plant and also combat phytopathogens by
v
vi Foreword
diverse mechanisms. It is essential to understand the mechanisms of interactions
between the plant and its microbiome so as to exploit it for providing nutrition;
fighting abiotic stresses such as salinity, temperature, and drought; or even control-
ling the phytopathogens. The plant microbiome plays an even more important role
in hostile conditions. After going through the book Plant Microbiome: Stress
Response, I would like to congratulate the editors, Dr. Dilfuza Egamberdieva and
Dr. Parvaiz Ahmad, for covering the diverse aspects of plant-microbe interactions
particularly in relation to biotic and abiotic stresses. The editors are renowned sci-
entists in the domain area of this volume and have also roped in contributions from
eminent researchers from around the globe working in the area of plant-microbe
interactions in relation to environmental and biotic stresses. Chapters included in
the volume provide the fundamental knowledge of the diversity of plant microbi-
ome and its role in combating the stresses in plants. The work presented in the vol-
ume also throws light on how the plant microbiome is important for the survival and
how it elicits the stress tolerance responses in the plant particularly in hostile condi-
tions. The tome also provides the inputs related to the utilization of useful plant-
associated microbes in enhancing the productivity and yields of stressed ecosystems.
With ever-increasing mouths to feed, it is very important that we use the marginal-
ized and stressed agroecosystems for better productivity. The book covers the
aspects of utilization of plant microbiome to enhance the productivity of stressed
agroecosystems in a holistic and sustainable manner. Latest tools and techniques of
molecular biology and metabolomics to study the intricacies of plant-microbe inter-
actions at the molecular and biochemical level have been explained and used. The
work presented in the volume also invokes the thought for future directions of
research in the area of utilization of plant microbiome for enhancing yields of hos-
tile and marginalized agroecosystems. The effort, reviews, and research put in the
volume are up to the mark and need of the hour. The book will be very useful for the
scholars, students, and researchers working in the field of plant-microbe interac-
tions particularly related to stress response and management. The future of mankind
is in using such green approaches so as to make our platter free of toxics and full of
nutrients and for food security of each and every human living on this planet. I once
again congratulate the editors and the contributors for this timely volume with futur-
istic and sustainable approach.
Professor, School for Environmental Science Naveen Kumar Arora
BBA University
Lucknow, UP, India
About the Series Editor
Prof. Naveen Kumar Arora PhD in microbiology, Professor in School for
Environmental Sciences, Babasaheb Bhimrao Ambedkar University (a Central
University), Lucknow, Uttar Pradesh, India, is a renowned researcher in the field of
environmental microbiology and biotechnology. His specific area of research is rhi-
zosphere biology and Plant Growth Promoting Rhizobacteria (PGPRs). He has
more than 50 research papers published in premium international journals and sev-
eral articles published in magazines and dailies. He is editor of three books, pub-
lished by Springer. He is member of a number of national and international societies
and reviewer of several international journals. He has delivered lectures in confer-
ences and seminars around the globe. He has a long-standing interest in teaching at
the postgraduate level and is involved in teaching courses in bacteriology, microbial
physiology, environmental microbiology, agriculture microbiology, and industrial
microbiology. He has been advisor to 57 postgraduate and 8 doctoral students.
Recently he was awarded for excellence in research by the Honorable Governor of
Uttar Pradesh. Although an academician and researcher by profession, he has a
huge obsession for wildlife and its conservation and has authored a book, Splendid
Wilds. He has a dedicated website, www.naveenarora.co.in, for the cause of wildlife
and environment conservation.
vii
Contents
1 Diversity, Functions, and Stress Responses of Soil
Microorganisms ....................................................................................... 1
Shyam Narain Pandey, Murtaza Abid,
and Mirza Mohammad Abid Ali Khan
2 Harnessing the Plant Microbiome for Improved Abiotic
Stress Tolerance ....................................................................................... 21
Syed Sarfraz Hussain, Samina Mehnaz,
and Kadambot H.M. Siddique
3 Plant Growth Promotion and Biocontrol Mediated
by Plant-Associated Bacteria ................................................................. 45
Miguel A. Matilla and Tino Krell
4 Arbuscular Mycorrhizal Fungi and Plant Stress Tolerance ............... 81
Abeer Hashem, Elsayed Fathi Abd_Allah, Abdulaziz A. Alqarawi,
and Dilfuza Egamberdieva
5 Trichoderma: Beneficial Role in Sustainable Agriculture
by Plant Disease Management ............................................................... 105
Laith Khalil Tawfeeq Al-Ani
6 Role of Secondary Metabolites from Plant Growth-Promoting
Rhizobacteria in Combating Salinity Stress ......................................... 127
Jitendra Mishra, Tahmish Fatima, and Naveen Kumar Arora
7 Plant Hormones as Key Regulators in Plant- Microbe Interactions
Under Salt Stress ..................................................................................... 165
Dilfuza Egamberdieva, Stephan Wirth, and Elsayed Fathi Abd_Allah
8 Nitric Oxide as a Signaling Molecule in Plant-B acterial
Interactions .............................................................................................. 183
Anukool Vaishnav, Sushil K. Sharma, Devendra Kumar Choudhary,
Kanti Prakash Sharma, Ees Ahmad, Mahaveer P. Sharma,
Aketi Ramesh, and Anil Kumar Saxena
ix
x Contents
9 Quorum Sensing: Melody Beneath the Ground ................................... 201
Javid A. Parray, Sumira Jan, Mohammad Yaseen Mir,
Nowsheen Shameem, and Azra N. Kamili
10 From Interaction to Gene Induction: An Eco- friendly Mechanism
of PGPR-Mediated Stress Management in the Plant .......................... 217
Yachana Jha and R.B. Subramanian
11 Predisposition of Crop Plants to Stress Is Directly Related
to Their DNA Health............................................................................... 233
Murat Dikilitas, Sema Karakas, and Parvaiz Ahmad
12 Legume, Microbiome, and Regulatory Functions of miRNAs
in Systematic Regulation of Symbiosis .................................................. 255
Syed Sarfraz Hussain, Meeshaw Hussain, Muhammad Irfan,
and Kadambot H.M. Siddique
13 Plant-Microbe-Metal Interactions: Basics, Recent Advances,
and Future Trends ................................................................................... 283
Rahul Mahadev Shelake, Rajesh Ramdas Waghunde,
Eugene Hayato Morita, and Hidenori Hayashi
14 Potential of Endophytic Bacteria in Heavy Metal and Pesticide
Detoxification ........................................................................................... 307
Anket Sharma, Vinod Kumar, Neha Handa, Shagun Bali,
Ravdeep Kaur, Kanika Khanna, Ashwani Kumar Thukral,
and Renu Bhardwaj
15 Microbial Siderophores in Metal Detoxification
and Therapeutics: Recent Prospective and Applications .................... 337
Resham Sharma, Renu Bhardwaj, Vandana Gautam,
Sukhmeen Kaur Kohli, Parminder Kaur, Ravinder Singh Bali,
Poonam Saini, Ashwani Kumar Thukral, Saroj Arora,
and Adarsh Pal Vig
16 Linking Plant Nutritional Status to Plant- AMF Interactions............. 351
Amanda Azevedo Bertolazi, Muriel da Silva Folli-Pereira,
Gustavo Caione, Lucas Zanchetta Passamani,
Carlos Moacir Colodete, Sávio Bastos de Souza,
Alessandro Coutinho Ramos, Nazima Rasool,
Getúlio de Freitas Seben Júnior, and Evandro Luiz Schoninger