Robert J. Henry Editor Plant Conservation Genetics Pre-publication “Thistimelyvolumewillbeagreat REVIEWS, resource for research scientists, COMMENTARIES, curators, and graduate and advanced EVALUATIONS . . . undergraduate students in the plant genetic resource area. It covers both economicallyimportantfoodandfibre crops,andtheissuesofconservationof biodiversity,rarespecies,andtheprob- lemsoffragmentedhabitatswhichare now to be found on every continent. “As efforts grow to conserve the Manyofthechaptersincludeinforma- world’s plant diversity, under- tiononthelatesttechnicaladvancesin standing the genetic diversity of each plant conservation genetics, from col- of the target species will become in- lection to conservation methodologies creasingly important. Robert Henry andtheuseofthelatestgenomicstech- has assembled outstanding authors at niquesforsensiblemanagementofcol- thecuttingedgeofconservationgenet- lections and habitats. The chapters by ics.Frominsitutoexsitusituations,and NicoleRiceandGlennBryanraisepar- fromtargetingpopulationstoevaluat- ticularlyimportantissuesaboutthefu- ing collections, this book reviews the tureutilityofDNAbanksandsequence currentstateofknowledgeinthefield informationforconservationstrategies anditspotentialimportancetoconser- in the freezer or potentially even ‘in vationefforts.Studentsofthefieldand silico.’ThefinalchapterbyeditorRob- all involved in the implementation of plant conservation efforts won’t want ert Henry brings to light some of the tomissthisinvaluablediscussionofa challengesinusingthesetechniquesin rapidly evolving field.” anintelligentmannertoenhanceplant conservation strategies.” James S. Miller, PhD William L. Brown Curator Ian Godwin, PhD, BAgrSc(Hons) And Director, William L. Brown Associate Professor of Plant Molecular Center for Plant Genetic Resources, Genetics, School of Land and Food Missouri Botanical Garden Resources, The University of Queensland NOTES FOR PROFESSIONAL LIBRARIANS AND LIBRARY USERS ThisisanoriginalbooktitlepublishedbyFoodProductsPress®,an imprintofTheHaworthPress,Inc.Unlessotherwisenotedinspecific chapterswithattribution,materialsinthisbookhavenotbeenprevi- ously published elsewhere in any format or language. CONSERVATION AND PRESERVATION NOTES AllbookspublishedbyTheHaworthPress,Inc.,anditsimprintsare printedoncertifiedpHneutral,acid-freebookgradepaper.Thispa- permeetstheminimumrequirementsofAmericanNationalStandard forInformation Sciences-Permanence ofPaperforPrintedMaterial, ANSI Z39.48-1984. DIGITAL OBJECT IDENTIFIER (DOI) LINKING TheHaworthPressisparticipating inreferencelinking forelements ofouroriginalbooks.(Formoreinformationonreferencelinkingini- tiatives, please consult the CrossRef Web site at www.crossref.org.) Whencitinganelementofthisbooksuchasachapter,includetheele- ment’s Digital Object Identifier (DOI) as the last item of the refer- ence. A Digital Object Identifier is a persistent, authoritative, and unique identifierthat apublisher assigns to each element ofabook. Becauseofitspersistence,DOIswillenableTheHaworthPressand otherpublisherstolinktotheelementreferenced,andthelinkwillnot break over time. This will be a great resource in scholarly research. Plant Conservation Genetics FOOD PRODUCTS PRESS® Crop Science AmarjitS.Basra, PhD Editor in Chief Plant-DerivedAntimycotics: Current Trends and Future Prospectsedited by MahendraRai andDonatellaMares Concise Encyclopedia of Temperate Tree Fruitedited by TaraAuxtBaugherandSumanSingha LandscapeAgroecologyby Paul A.Wojtkowski Concise Encyclopedia of Plant Pathologyby P.Vidhyasekaran Molecular Genetics and Breeding of Forest Treesedited bySandeepKumar and Matthias Fladung Testing of Genetically Modified Organisms in Foodsedited byFaridE. Ahmed Fungal Disease Resistance in Plants: Biochemistry, Molecular Biology, and Genetic Engineeringedited by Zamir K. Punja Plant Functional Genomicsedited by Dario Leister Immunology in Plant Health and Its Impact on Food Safetyby P. Narayanasamy Abiotic Stresses: Plant Resistance Through Breeding and Molecular Approaches edited by M. Ashraf and P. J. C. Harris Teaching in the Sciences: Learner-Centered Approachesedited by Catherine McLoughlin and Acram Taji Handbook of Industrial Cropsedited by V. L. Chopra and K. V. Peter Durum Wheat Breeding: Current Approaches and Future Strategiesedited by Conxita Royo, Miloudi M. Nachit, Natale Di Fonzo, José Luis Araus, Wolfgang H. Pfeiffer, and Gustavo A. Slafer Handbook of Statistics for Teaching and Research in Plant and Crop Scienceby Usha Rani Palaniswamy and Kodiveri Muniyappa Palaniswamy Handbook of Microbial Fertilizersedited by M. K. Rai Eating and Healing: Traditional Food As Medicineedited by Andrea Pieroni and Lisa Leimar Price Handbook of Plant Virologyedited by Jawaid A. Khan and Jeanne Dijkstra Physiology of Crop Productionby N. K. Fageria, V. C. Baligar, and R. B. Clark Plant Conservation Geneticsedited by Robert J. Henry Introduction to Fruit Cropsby Mark Rieger Sourcebook for Intergenerational Therapeutic Horticulture: Bringing Elders and Children Togetherby Jean M. Larson and Mary Hockenberry Meyer Agriculture Sustainability: Principles, Processes, and Prospectsby Saroja Raman Introduction to Agroecology: Principles and Practiceby Paul A. Wojtkowski Handbook of Molecular Technologies in Crop Disease Managementby P. Vidhyasekaran Handbook of Precision Agriculture: Principles and Applicationsedited by Ancha Srinivasan Dictionary of Plant Tissue Cultureby Alan C. Cassells and Peter B. Gahan Handbook of Potato Production, Improvement, and Postharvest Managementedited by Jai Gopal and S. M. Paul Khurana Plant Conservation Genetics Robert J. Henry Editor Food Products Press® An Imprint of The Haworth Press, Inc. New York (cid:127) London (cid:127) Oxford For more information on this book or to order, visit http://www.haworthpress.com/store/product.asp?sku=5546 or call 1-800-HAWORTH (800-429-6784) in the United Statesand Canada or (607) 722-5857 outside the United States and Canada or contact [email protected] Published by FoodProductsPress®,animprintofTheHaworthPress,Inc.,10AliceStreet,Binghamton,NY 13904-1580. ©2006byTheHaworthPress,Inc.Allrightsreserved.Nopartofthisworkmaybereproducedor utilizedinanyformorbyanymeans,electronicormechanical,includingphotocopying,microfilm, andrecording,orbyanyinformationstorageandretrievalsystem,withoutpermissioninwriting from the publisher. Printed in the United States of America. PUBLISHER’S NOTE Thedevelopment,preparation,andpublicationofthisworkhasbeenundertakenwithgreatcare. However,thePublisher,employees,editors,andagentsofTheHaworthPressarenotresponsible for any errors contained herein or for consequences that may ensue from use of materials or informationcontainedinthiswork.TheHaworthPressiscommittedtothedisseminationofideas andinformationaccordingtothehigheststandardsofintellectualfreedomandthefreeexchangeof ideas.Statementsmadeandopinionsexpressedinthispublicationdonotnecessarilyreflectthe views of the Publisher, Directors, management, or staff of The Haworth Press, Inc., or an endorsement by them. Cover design by Marylouise E. Doyle. Library of Congress Cataloging-in-Publication Data Plant conservation genetics / Robert J. Henry, editor. p. cm. Includes bibliographical references and index. ISBN-13: 978-1-56022-996-4 (hard : alk. paper) ISBN-10: 1-56022-996-9 (hard : alk. paper) ISBN-13: 978-1-56022-997-1 (soft : alk. paper) ISBN-10: 1-56022-997-7 (soft : alk. paper) 1. Germplasm resources, Plant. 2. Genetic resources conservation. I. Henry, Robert J. QK981.7.P58 2006 333.95'3416—dc22 2005023383 CONTENTS About the Editor ix Contributors xi Chapter 1. Plant Conservation Genetics: Importance, Options, and Opportunities 1 Robert J. Henry Introduction 1 Importance of Plants in Life 2 Role of Genetics 2 Options and Strategies for Plant Conservation 3 Opportunities for Application of Plant Conservation Genetics 3 Overview of Plant Conservation Genetics 5 Chapter 2. Techniques for ex Situ Plant Conservation 7 Imke Thormann Mohammad Dulloo Johannes Engels Introduction 7 Historical Context 8 Seed and Ultra-Dry Seed Storage 10 Botanic Garden Conservation 11 DNA Storage 12 Field Gene Banks 12 In Vitro Techniques 15 Pollen Storage 23 Germplasm Collection and Management 26 Complementary Conservation 26 Chapter 3. Strategies Employed to Collect Plant Genetic Resources for ex Situ Conservation 37 Sally L. Dillon Introduction 37 Planning the Collecting Mission 39 Data and Seed Collection 48 Postcollection Activities and Seed Processing for ex Situ Conservation 52 Recent Collecting by the Australian Tropical Crops and Forages Collection 53 Concluding Remarks 54 Chapter 4. The Role of Genetic Resources Held in Seed Banks in Plant Improvement 57 Tsukasa Nagamine Introduction 57 New Alleles onWxGenes Found in Local Wheat Cultivars 58 Null Allele of Lipoxygenase-3 from Rice Local Cultivars Using Core Collection 61 Characterizing Natural Genes Controlling the Heading of Rice by QTL Analysis 64 Discovery of the Gene Controlling Seed Longevity of Rice 66 Effective Management of the Stock Database by Seed Lot Unit 68 Conservation and Multiplication of Plant Genetic Resources in the Country of Origin 69 Evaluation Database for Heterogeneous Plant Genetic Resources 71 Conclusion 71 Chapter 5. Botanic Gardens and Conservation 75 Robert O. Makinson Introduction 75 Critical Factors in Using Botanic Gardens for Conservation Science 80 Who Has What Species? 86 Acknowledgment and Promotion of ex SituCollections 88 Property Rights, Access, and Benefit Sharing 88 Chapter 6.Conservation of Plant Genes and the Role of DNA Banks 91 Nicole Rice Introduction 91 Conservation of Plant Biodiversity 92 Ex Situ Collections 92 How Do We Define a DNA Bank? 93 Database and Sample Management 95 Collection Strategies 98 DNA Extraction and Storage 99 Constraints for ex Situ Collectionsand DNA Banks 100 Concluding Remarks 101 Chapter 7. Strategies for in SituConservation 105 Ghillean T. Prance Introduction 105 Identification of Ecosystems to Be Conserved 106 Relationships with the Local Population 110 Protection Legislation 111 Monitoring 111 Maintaining the Ecosystem 111 Effective Financing 112 A Management Plan 113 Conclusion 114 Appendix: Article 8 of the Convention on Biological Diversity (UNEP/CBD, 1994) 114 Chapter 8. Impact of Habitat Fragmentation on Plant Populations 117 Maurizio Rossetto Introduction 117 Consequences of Habitat Fragmentation: Genetic Hazards Small, Isolated Populations Face 118 Conclusion: Developing Informative Habitat Fragmentation Research 125 Chapter 9. Molecular Analysis of Plant Genetic Resources 131 Glenn Bryan Rationale for Molecular Analysis of Plant Genetic Resources 131 Molecular Marker Techniques Available for the Analysis of Plant Genetic Resources 132