PLANT BREEDING REVIEWS Volume 38 PlantBreedingReviewsissponsoredby: AmericanSocietyforHorticulturalScience InternationalSocietyforHorticulturalScience SocietyofAmericanForesters NationalCouncilofCommercialPlantBreeders Editorial Board, Volume 38 I. L. Goldman C. H. Michler Rodomiro Ortiz PLANT BREEDING REVIEWS Volume 38 Edited by Jules Janick Purdue University Coverdesign:JohnWiley&Sons,Inc. 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Wileyalsopublishesitsbooksinavarietyofelectronicformats.Somecontentthat appearsinprintmaynotbeavailableinelectronicformats.Formoreinformationabout Wileyproducts,visitourwebsiteatwww.wiley.com. LibraryofCongressCataloging-in-PublicationData: ISBN978-1-118-91683-4 ISSN0730-2207 PrintedintheUnitedStatesofAmerica 10 9 8 7 6 5 4 3 2 1 Contents Contributors ix 1. DanielZohary:GeneticistandExplorerofPlant Domestication 1 GioraSimchen I. EarlyDays 2 II. GeneticRelationshipsamongRelatedPlantSpecies 3 III. DomesticationofCropsandFruitTrees 4 IV. TheScientificApproachandMethodology ofDanielZohary 6 V. TheBook 7 VI. Awards,Honors,andRecognition 8 VII. Personality 9 LiteratureCitedandSelectedPublicationsofDanielZohary 10 2. TheUseofAssociationGeneticsApproachesinPlant Breeding 17 MaríaF.Álvarez,TeresaMosquera,andMatthewW.Blair I. Introduction 19 II. AdvantagesofAssociationMappingApproaches 20 III. MethodsofAssociationGenetics 26 IV. ExamplesofAssociationMapping 34 V. SoftwareforDataAnalysis 46 VI. AssociationMappingComparedwithLinkageMapping 48 VII. Genome-WideSelectionandGenomicSelection 52 VIII. Outlook 54 Acknowledgments 57 LiteratureCited 57 v vi CONTENTS 3. EpigeneticsConnectstheGenometoItsEnvironment 69 RayA.Bressan,Jian-KangZhu,MichaelJ.VanOosten,Albino Maggio,HansJ.Bohnert,andViswanathanChinnusamy I. Introduction 71 II. HistoricalPerspectiveandConceptualFramework 72 III. Epigenetics 80 IV. EpigeneticMemory 90 V. Sex,Epigenetics,andtheGenome 93 VI. AdaptationisaFormofDevelopment 102 VII. Evolution:TheEngineofIdeas 108 Acknowledgments 121 LiteratureCited 121 4. PeanutImprovementforHumanHealth 143 SangamDwivedi,NaveenPuppala,SoheilaMaleki, PeggyOzias-Akins,andRodomiroOrtiz I. Introduction 146 II. GeneticVariabilityforNutritionalTraits 149 III. PeanutAllergens 153 IV. PredictingSeedQualityandAllergens 156 V. GeneticandMolecularBasesofHighOleateTrait 159 VI. SequencingthePeanutGenomeandImplications inBreeding 159 VII. Transgene(s)toProduceNutrient-DenseandToxin- andAllergen-FreePeanuts 161 VIII. BreedingOpportunities 165 IX. Outlook 169 Acknowledgments 171 LiteratureCited 171 5. RiceBreedinginLatinAmerica 187 CésarP.Martínez,EdgarA.Torres,MarcChatel, GloriaMosquera,JorgeDuitama,ManabuIshitani, MichaelSelvaraj,BeataDedicova,JoeTohme, CécileGrenier,MathiasLorieux,MaribelCruz,LuisBerrío, EdgarCorredor,GonzaloZorrilladeSanMartin, FlavioBreseghello,OrlandoPeixoto,JoseManoel ColombariFilho,AdrianoPereiradeCastro,SergioIraçu GindriLopes,MaraBarbosa,GustavoRodrigoDaltrozzo Funck, Pedro Blanco, Fernando Pérez de Vida, CONTENTS vii Federico Molina, Juan Rosas, Sebastián Martínez, Victoria Bonnecarrere, Silvia Garaycochea, Gonzalo Carracelas, Alfredo Marin, Fernando Correa-Victoria, Ismael Camargo, and Carlos Bernardo Bruzzone I. IntroductoryRemarks 192 II. TheCIATRiceProgram 194 III. AdvancesinPopulationImprovementin LatinAmericaandtheCaribbean 202 IV. GeneticsandGenomicsApproachestoImprove RiceBreeding 206 V. BreedingforResistancetoRicePathogens 216 VI. BreedingforAdaptationtoAbioticStresses 223 VII. HybridRiceBreeding 230 VIII. RiceBreedingPrograms 234 IX. PerspectivesandFutureDirections 265 LiteratureCited 266 SubjectIndex 279 CumulativeSubjectIndex 281 Cumulative ContributorIndex 307
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