Photosynthesis: Molecular Biology of Energy Capture

418 Pages·1998·7.085 MB·English

by  Lee McIntosh (Eds.)

Contributors to Volume 297
Article numbers are in parentheses following the names of contributors.
Affiliations listed are current.
KLAUS APEL (16), Institut far Pflanzen- FEVZI DALDAL (6), Department of ,ygoloiB
,neifahcsnessiw CH 8092 Zarich, Switzer- ytisrevinU of Pennsylvania, ,aihpledalihP
dnal ainavlysnneP 8106-40191
GREGORY ARMSTRONG (16), Institut far PAUL P. DIJKWEL (12), Department of -celoM
,netfahcsnessiwneznalfP CH 8092 Ziirich, ular ,sciteneG John Innes ,ertneC ,yenloC
Switzerland Norwich NR4 7UH, United Kingdom
ALICE BARKAN (4), Institute of Molecular Bi-
BRUCE A. DINER (23), Central Research and
ology, University of ,nogerO Eugene, Ore-
Development Department, Experimental
gon 30479
,noitatS .E L du Pont ed Nemours dna Com-
SCOTF E. BINGHAM (21), Department of Plant pany, Wilmington, Delaware 3710-08891
Biology, Arizona State ,ytisrevinU Tempe,
DION G. DURNFORD (15), Department of
Arizona 1061-78258
Biology, University of New Brunswick,
TERRY M. BRICKER (22), Department of Bio- ,notcirederF New Brunswick, Canada
lacigol ,secneicS Louisiana State ,ytisrevinU
E3B 6El
Baton Rouge, Louisiana 30807
JESUS M. ERASO (10), Department of -iborciM
RICHARD K. BRUICK (13), Department of lleC
ology and Molecular ,sciteneG ehT -revinU
Biology, ehT Skaggs Institute of lacimehC
sity of Texas Medical School at Houston,
Biology, The Scripps hcraeseR ,etutitsnI La
Houston, Texas 03077
,alloJ California 73029
JAN ERIKSSON (11), Department of Biochem-
YUPING A. CAI (1), Department of raluceloM
,yrtsi ehT Arrhenius Laboratories, Stock-
and Cell Biology, University of ,ainrofilaC
holm University, S-10691 Stockholm,
Berkeley, California 6023-02749
nedewS
PARAG R. CHITNIS (8), Department of Bio-
chemistry and Biophysics, Iowa State -inU JEAN-MICHEL ESCOUBAS (15), Ddfense te
,ytisrev Ames, Iowa 11005 ecnatsis~R chez sel Invert~brds Marins
(DRIM), Universitd ed Montpellier ,II
VAISHALI P. CHITNIS (8), Department of Bio-
59043 ,reilleptnoM ecnarF
chemistry and Biophysics, Iowa State -inU
,ytisrev Ames, Iowa 11005 PAUL G. FALKOWSKI (15), Environmental
AMYBETH COHEN (13), Department of Cell Biophysics and Molecular Biology Pro-
Biology, ehT Skaggs Institute of lacimehC gram, Institute of Marine and Coastal Sci-
Biology, ehT Scripps hcraeseR ,etutitsnI La ,secne Rutgers ,ytisrevinU New Brunswick,
,alloJ California 73029 New Jersey 1258-10980
MICHAEL F. COHEN (1), Section of -loiborciM G~NTER FR1TZSCH (5), Max-Planck-Institut
ogy, Division of Biological ,secneicS Uni- far Biophysik, D-60528 Frankfurt a.M.,
versity of California, Davis, California ynamreG
61659 HALLE GHEBRAMEDHIN (11), Department of
JEFFREY A. CRUZ (9), Department of -iborciM ,yrtsimehcoiB ehT Arrhenius ,seirotarobaL
ology, Louisiana State University, Baton Stockholm University, S-10691 Stock-
Rouge, Louisiana 30807 holm, Sweden
ix
X CONTRIBUTORS TO VOLUME 297
JOHN H. GOLBECK (7), Department of Bio- LEE MCINTOSH (2), MSU-DOE Plant Re-
chemistry and Molecular Biology, The search Laboratory and Department of -DiB
Pennsylvania State University, University chemistry, Michigan State University, East
Park, Pennsylvania 20861 Lansing, Michigan 48824
MARK GOMELSKY (10), Department of Micro- JOHN C. MEEKS (1), Section of Microbiology,
biology and Molecular Genetics, The Uni- Division of Biological Sciences, University
versity of Texas Medical School at Houston, of California, Davis, California 61659
Houston, Texas 03077
SABEEHA MERCHANT (18), Department of
ARTHUR R. GROSSMAN (19), Department of Chemistry and Biochemistry, University of
Plant Biology, Carnegie Institution of California, Los Angeles, Los Angeles, Cali-
Washington, Stanford, California 50349 fornia 59009
MARK HARKER (17), Department of Genetics, HANNU OILLAKYLLYM (6), Department of Bi-
Institute of Life Sciences, The Hebrew Uni- ology, University of Pennsylvania, Philadel-
versity of Jerusalem, Jerusalem, 40919 Israel phia, Pennsylvania 8106-40191
JOSEPH HIRSCHBERG (17), Department of Ge- ONDREJ PRASIL (15), Laboratory of Photo-
netics, Institute of Life Sciences, The He-
synthesis, Institute of Microbiology, Acad-
brew University of Jerusalem, Jerusalem,
emy of Sciences of Czech Republic, Trebon
40919 Israel
CZ 973 ,18 Czech Republic
CHRISTER JANSSON (11), Department of Bio-
CINDY PUTNAM-EVANS (22), Department of
chemistry, The Arrhenius Laboratories,
Biology, East Carolina University, Green-
Stockholm University, S-10691 Stock-
ville, North Carolina 27858
holm, Sweden
JEANEaWE M. QUINN (18), Department of
PING N~J (8), Department of Agronomy, Iowa
Chemistry and Biochemistry, University of
State University, Ames, Iowa 11005
California, Los Angeles, Los Angeles, Cali-
SAMUEL KAPLAN (10), Department of Micro- fornia 59009
biology and Molecular Genetics, The Uni-
STEVEN RODERMEL (14), Department of
versity of Texas Medical School at Houston,
Botany, Iowa State University, Ames,
Houston, Texas 03077
Iowa 11005
AN KE (8), Division of Biology, Kansas State
University, Manhattan, Kansas 66506 FRED ROOK (12), Department of Molecular
Genetics, John lnnes Centre, Colney, Nor-
DAVID M. KEHOE (19), Department of Plant
wich NR4 7UH, United Kingdom
Biology, Carnegie Institution of Washing-
ton, Stanford, California 50349 GAZA SALIH (11), Department of Biochemis-
try, The Arrhenius Laboratories, Stockholm
KAREN L. KINDLE (3), Plant Science Center,
University, S-10691 Stockholm, Sweden
Cornell University, Ithaca, New York 35841
HANS-GEOR6 KOCH (6), Department of Biol- SJEF C. M. SMEEKENS (12), Department of
Molecular Cell Biology, University of
ogy, University of Pennsylvania, Philadel-
,thcertU 3584 CH Utrecht, The Netherlands
phia, Pennsylvania 8106-40191
HYEONMOO LEE (21), Department of Plant JUN SUN (8), Department of Biochemistry and
Biology, Arizona State University, Tempe, Biophysics, Iowa State University, Ames,
Arizona 1061-78258 Iowa 11005
STEPHEN P. MAYFIELD (13), Department of WIM F. J. VERMAAS (20), Department of Plant
Cell Biology, The Skaggs Institute of Chem- Biology, and Center for the Study of Early
ical Biology, The Scripps Research Institute, Events in Photosynthesis, Arizona State
La Jolla, California 92037 University, Tempe, Arizona 1061-78258
RICHARD E. MCCARTY (9), Department of ANDREW N. WEBBER (21), Department of
Biology, Johns Hopkins University, Balti- Plant Biology, Arizona State University,
more, Maryland 81212 Tempe, Arizona 1061-78258
CONTRIBUTORS TO VOLUME 297 xi
RONYEV WIKLUND (11), Department of Bio- University of Texas Medical School at
chemistry, The Arrhenius Laboratories, Houston, Houston, Texas 77030
Stockholm University, S-10691 Stock- CHriSTOPHER B. YOI~N (13), Developmental
holm, Sweden Genetics Program, Skirball Institute of Bio-
molecular Medicine, New York, New
C. PEVER WOLK (1), MSU-DOE Plant Re-
York 10016
search Laboratory, Michigan State Univer-
sity, East Lansing, Michigan 48824-1312 GNIPNAIJ YU (2), MSU-DOE Plant Research
Laboratory, Michigan State University, East
JITuO Wu (22), Department of Plant Pathol- Lansing, Michigan 48824
ogy, Louisiana State University, Baton
JILL H. ZEILSTRA-RYALLS (10), Department
Rouge, Louisiana 70803
of Microbiology and Molecular Genetics,
ALEXEI A. YELISEEV (10), Department of Mi- The University of Texas Medical School at
crobiology and Molecular Genetics, The Houston, Houston, Texas 77030
TT
The sequence of a chloroplast gene encoding a protein was first pub-
lished in 1980, not so very long ago. It was not a coincidence that the
integration of molecular approaches in plants initially took place, to a
large degree, in the area of photosynthesis. The depth and quality of the
physiological, biochemical, and biophysical advances in photosynthesis
made it one of the best targets for the “new” molecular approaches. We
have now moved from studying “photosynthetic” genes to their modifica-
tion and reinsertion into bacteria, cyanobacteria, algae, and higher plants.
Integration of structure and function studies in photosynthetic research is
the modern paradigm, no longer a new phenomenon. This Methods in
Enzymology volume demonstrates how far we have come and makes it
obvious that future work has many challenges but far fewer technical limita-
tions.
My gratitude is extended to all the authors contributing to this volume
and others not represented, but without whom it would not have been
possible. I also extend my thanks to those at Academic Press for all their
help and patience.
LEE MCINTOSH
Xll,
METHODS IN ENZYMOLOGY
EMULOV I. Preparation and Assay of Enzymes
Edited by SIDNEY P. KCIWOLOC DNA NATHAN O. KAPLAN
EMULOV II. Preparation and Assay of Enzymes
Edited yb SIDNEY P. KCIWOLOC DNA NATHAN O. KAPLAN
EMULOV III. Preparation and Assay of Substrates
Edited by SIDNEY P. KCIWOLOC DNA NATHAN O. KAPLAN
EMULOV IV. Special Techniques for the Enzymologist
Edited by SIDNEY P. KCIWOLOC DNA NATHAN O. KAPLAN
EMULOV V. Preparation and Assay of Enzymes
Edited by SIDNEY P. KCIWOLOC DNA NATHAN O. KAPLAN
EMULOV VI. Preparation and Assay of Enzymes (Continued)
Preparation and Assay of Substrates
Special Techniques
Edited by SIDNEY P. KCIWOLOC DNA NATHAN 0. KAPLAN
EMULOV VII. Cumulative Subject Index
Edited by SIDNEY P. KCIWOLOC DNA NATHAN 0. KAPLAN
EMULOV VIII. Complex Carbohydrates
Edited yb ELIZABETH F. NEUFELD DNA VICTOR GRUBSNIG
EMULOV IX. Carbohydrate Metabolism
Edited yb WILLIS A. WOOD
EMULOV X. Oxidation and Phosphorylation
Edited yb RONALD W. KOORBATSE DNA MAYNARD E. NAMLLUP
EMULOV XI. Enzyme Structure
Edited yb C. H. W. HIRS
EMULOV XII. Nucleic Acids (Parts A and B)
Edited yb LAWRENCE NAMSSORG DNA KIVIE EVADLOM
EMULOV XIII. Citric Acid Cycle
Edited yb J. M. NIETSNEWOL
EMULOV XIV. Lipids
Edited by J. M. NIETSNEWOL
EMULOV XV. Steroids and Terpenoids
Edited by DNOMYAR B. NOTYALC
EMULOV XVI. Fast Reactions
Edited by HTENNEK NITSUK
XV
xvi METHODS IN ENZYMOLOGY
EMULOV XVlI. Metabolism of Amino Acids and Amines (Parts A and B)
Edited by TREBREH ROBAT DNA WHITE CELIA ROBAT
EMULOV XVIII. Vitamins and Coenzymes (Parts A, B, and C)
Edited by DLANOD B. McCoRMICK DNA LEUMEL D. THGIRW
EMULOV XIX. Proteolytic Enzymes
Edited by EDURTREG E. NNAMLREP DNA OLZSAL DNAROL
EMULOV XX. Nucleic Acids and Protein Synthesis (Part C)
Edited by KIVIE EVADLOM DNA ECNERWAL NAMSSORG
EMULOV XXI. Nucleic Acids (Part D)
Edited by ECNERWAL NAMSSORG DNA KIVIE EVADLOM
EMULOV XXII. Enzyme Purification and Related Techniques
Edited by MAILLIW B. YBOKAJ
EMULOV XXIII. Photosynthesis (Part A)
Edited yb YNOHTNA NAS ORTEIP
EMULOV XXIV. Photosynthesis and Nitrogen Fixation (Part B)
Edited by YNOHTNA NAS ORTEIP
EMULOV XXV. Enzyme Structure (Part B)
Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV XXVI. Enzyme Structure (Part C)
Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV XXVII. Enzyme Structure (Part D)
Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV XXVlII. Complex Carbohydrates (Part B)
Edited by ROTCIV GRUBSNIG
EMULOV XXIX. Nucleic Acids and Protein Synthesis (Part E)
Edited by ECNERWAL NAMSSORG DNA KIVIE EVADLOM
EMULOV .x~vzX Nucleic Acids and Protein Synthesis (Part F)
Edited by KIVIE EVADLOM DNA ECNERWAL NAMSSORG
EMULOV XXXI. Biomembranes (Part A)
Edited by YENDIS REHCSIELF DNA RETSEL REKCAP
EMULOV XXXII. Biomembranes (Part B)
Edited by YENDIS REHCSIELF DNA RETSEL REKCAP
EMULOV XXXIII. Cumulative Subject Index Volumes I-XXX
Edited by AHTRAM G. SINNED DNA DRAWDE A. SINNED
EMULOV XXXIV. Affinity Techniques (Enzyme Purification: Part B)
Edited by MAILLIW B. YBOKAJ DNA MEIR KEHCLIW
EMULOV XXXV. Lipids (Part B)
Edited yb NHOJ M. NIETSNEWOL
METHODS IN ENZYMOLOGY xvii
EMULOV XXXVI. Hormone Action (Part A: Steroid Hormones)
Edited by BERT W. O'MALLEY DNA JOEL G. HARDMAN
EMULOV XXXVII. Hormone Action (Part B: Peptide Hormones)
Edited by BERT W. O'MALLEY DNA JOEL G. HARDMAN
EMULOV XXXVIII. Hormone Action (Part C: Cyclic Nucleotides)
Edited by JOEL G. HARDMAN DNA BERT W. O'MALLEY
EMULOV XXXIX. Hormone Action (Part D: Isolated Cells, Tissues, and Organ
Systems)
Edited yb JOEL G. HARDMAN DNA BERT W. O'MALLEY
EMULOV XL. Hormone Action (Part E: Nuclear Structure and Function)
Edited by BERT W. O'MALLEY DNA JOEL G. HARDMAN
EMULOV XLI. Carbohydrate Metabolism (Part B)
Edited by W. A. DOOW
EMULOV XLII. Carbohydrate Metabolism (Part C)
Edited by W. A. DOOW
EMULOV XLIII. Antibiotics
Edited by JOHN H. HASH
EMULOV XLIV. Immobilized Enzymes
Edited by SUALK HCABSOM
EMULOV XLV. Proteolytic Enzymes (Part B)
Edited by OLZSAL DNAROL
EMULOV XLVI. Affinity Labeling
Edited by WILLIAM B. YBOKAJ DNA MEIR WILCHEK
EMULOV XLVII. Enzyme Structure (Part E)
Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV XLVIII. Enzyme Structure (Part F)
Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV XLIX. Enzyme Structure (Part G)
Edited yb C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV L. Complex Carbohydrates (Part C)
Edited by ROTCIV GRUBSNIG
EMULOV LI. Purine and Pyrimidine Nucleotide Metabolism
Edited by PATRICIA A. HOFFEE DNA MARY ELLEN JONES
EMULOV LII. Biomembranes (Part "C Biological Oxidations)
Edited by YENDIS FLEISCHER DNA LESTER PACKER
EMULOV LIII. Biomembranes (Part "D Biological Oxidations)
Edited by SIDNEY FLEISCHER DNA LESTER PACKER
EMULOV LIV. Biomembranes (Part E: Biological Oxidations)
Edited by SIDNEY FLEISCHER DNA LESTER PACKER
XVlll METHODS IN ENZYMOLOGY
EMULOV LV. Biomembranes (Part F: Bioenergetics)
Edited by SIDNEY FLEISCHER DNA LESTER PACKER
EMULOV LVI. Biomembranes (Part G: Bioenergetics)
Edited yb YENDIS FLEISCHER DNA LESTER PACKER
EMULOV LVII. Bioluminescence and Chemiluminescence
Edited by MARLENE A. DELUCA
EMULOV LVIII. Cell Culture
Edited yb WILLIAM B. JAKOBY DNA IRA PASTAN
EMULOV LIX. Nucleic Acids and Protein Synthesis (Part G)
Edited yb KIVIE MOLDAVE DNA LAWRENCE GROSSMAN
EMULOV LX. Nucleic Acids and Protein Synthesis (Part H)
Edited yb KIVIE MOLDAVE DNA LAWRENCE GROSSMAN
EMULOV .16 Enzyme Structure (Part H)
Edited yb C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV .26 Vitamins and Coenzymes (Part D)
Edited yb DONALD B. McCoRMICK DNA LEMUEL D. WRIGHT
EMULOV .36 Enzyme Kinetics and Mechanism (Part "A Initial Rate and Inhibitor
Methods)
Edited by DANIEL L. PURICH
EMULOV .46 Enzyme Kinetics and Mechanism (Part B: Isotopic Probes and Com-
plex Enzyme Systems)
Edited by DANIEL L. PUR1CH
EMULOV .56 Nucleic Acids (Part I)
Edited by LAWRENCE GROSSMAN DNA KIVIE MOLDAVE
EMULOV .66 Vitamins and Coenzymes (Part E)
Edited by DONALD B. McCoRMICK DNA LEMUEL D. WRIGHT
EMULOV .76 Vitamins and Coenzymes (Part F)
Edited by DONALD B. McCoRMICK DNA LEMUEL D. WRIGHT
VOLUME 68. Recombinant DNA
Edited by YAR Wu
EMULOV .96 Photosynthesis and Nitrogen Fixation (Part C)
Edited yb YNOHTNA NAS ORTEIP
EMULOV .07 Immunochemical Techniques (Part A)
Edited yb HELEN VAN VUNAKIS DNA JOHN J. LANGONE
EMULOV .17 Lipids (Part C)
Edited by JOHN M. NIETSNEWOL
EMULOV .27 Lipids (Part D)
Edited yb JOHN M. NIETSNEWOL
METHODS IN ENZYMOLOGY xix
EMULOV .37 Immunochemical Techniques (Part B)
Edited by JOHN J. LANGONE DNA HELEN VAN SIKANUV
EMULOV .47 Immunochemical Techniques (Part C)
Edited by JOHN J. LANOONE DNA HELEN VAN SIKANUV
EMULOV 75. Cumulative Subject Index Volumes XXXI, XXXII, XXXIV-LX
Edited yb EDWARD A. DENNIS DNA MARTHA G. DENNIS
EMULOV 76. Hemoglobins
Edited by ERALDO ANTONINI, LuIoI ROSSI-BERNARDI, DNA EMILIA ENOCNAIHC
EMULOV 77. Detoxication and Drug Metabolism
Edited by WILLIAM B. YBOKAJ
EMULOV 78. Interferons (Part A)
Edited by SIDNEY AKTSEP
EMULOV 79. Interferons (Part B)
Edited by SIDNEY AKTSEP
EMULOV 80. Proteolytic Enzymes (Part C)
Edited by LASZLO LORAND
EMULOV 81. Biomembranes (Part H: Visual Pigments and Purple Mem-
branes, I)
Edited yb LESTER PACKER
EMULOV 82. Structural and Contractile Proteins (Part A: Extracellular Matrix)
Edited yb LEON W. MAHGN1NNUC DNA DIXIE W. NESKIREDERF
EMULOV 83. Complex Carbohydrates (Part D)
Edited yb VICTOR GRUBSNIG
EMULOV .48 Immunochemical Techniques (Part D: Selected Immunoassays)
Edited by JOHN J. LANGONE DNA HELEN VAN SIKANUV
EMULOV 85. Structural and Contractile Proteins (Part B: The Contractile Appara-
tus and the Cytoskeleton)
Edited yb DIXIE W. NESKIREDERF DNA LEON W. MAHGNINNUC
EMULOV 86. Prostaglandins and Arachidonate Metabolites
Edited yb WILLIAM E. M. LANDS DNA WILLIAM L. HTIMS
EMULOV 87. Enzyme Kinetics and Mechanism (Part C: Intermediates, Stereo-
chemistry, and Rate Studies)
Edited yb DANIEL L. PURICH
EMULOV 88. Biomembranes (Part I: Visual Pigments and Purple Mem-
branes, II)
Edited yb LESTER PACKER
EMULOV 89. Carbohydrate Metabolism (Part D)
Edited yb WILLIS A. WOOD
EMULOV 90. Carbohydrate Metabolism (Part E)
Edited yb WILLIS A. WOOD
XX METHODS NI ENZYMOLOGY
EMULOV .19 Enzyme Structure (Part I)
Edited by C. H. W. HIRS DNA EGRES N. FFEHSAMIT
EMULOV .29 Immunochemical Techniques (Part E: Monoclonal Antibodies and
General Immunoassay Methods)
Edited yb JOHN J. LANGONE DNA HELEN VAN VUNAKIS
EMULOV .39 Immunochemical Techniques (Part F: Conventional Antibodies, Fc
Receptors, and Cytotoxicity)
Edited by JOHN J. LANGONE DNA HELEN VAN VUNAKIS
EMULOV .49 Polyamines
Edited by HERBERT TABOR DNA CELIA WHITE TABOR
EMULOV .59 Cumulative Subject Index Volumes 61-74, 76-80
Edited by EDWARD A. SINNED DNA MARTHA G. DENNIS
EMULOV .69 Biomembranes [Part J: Membrane Biogenesis: Assembly and Tar-
geting (General Methods; Eukaryotes)]
Edited by SIDNEY FLEISCHER DNA BECCA FLEISCHER
EMULOV .79 Biomembranes [Part K: Membrane Biogenesis: Assembly and Tar-
geting (Prokaryotes, Mitochondria, and Chloroplasts)]
Edited by SIDNEY FLEISCHER DNA BECCA FLEISCHER
EMULOV .89 Biomembranes (Part L: Membrane Biogenesis: Processing and Re-
cycling)
Edited by SIDNEY FLEISCHER DNA BECCA FLEISCHER
EMULOV .99 Hormone Action (Part F: Protein Kinases)
Edited by JACKIE D. CORBIN DNA JOEL G. HARDMAN
EMULOV 100. Recombinant DNA (Part B)
Edited by YAR Wu, LAWRENCE GROSSMAN, DNA KIVIE MOLDAVE
EMULOV 101. Recombinant DNA (Part C)
Edited yb YAR Wu, LAWRENCE GROSSMAN, DNA KIVIE MOLDAVE
EMULOV 102. Hormone Action (Part G: Calmodulin and Calcium-Binding Pro-
teins)
Edited yb ANTHONY R. MEANS DNA BERT W. O'MALLEY
EMULOV 103. Hormone Action (Part H: Neuroendocrine Peptides)
Edited yb P. LEAHCIM NNOC
EMULOV 104. Enzyme Purification and Related Techniques (Part C)
Edited by WILLIAM B. JAKOBY
EMULOV 105. Oxygen Radicals in Biological Systems
Edited by RETSEL REKCAP
EMULOV 106. Posttranslational Modifications (Part A)
Edited by FINN WOLD DNA KIVIE MOLDAVE
EMULOV 107. Posttranslational Modifications (Part B)
Edited by FINN DLOW DNA KIVIE EVADLOM