RESEARCHARTICLE Osteology Supports a Stem-Galliform Affinity Sylviornis for the Giant Extinct Flightless Bird neocaledoniae (Sylviornithidae, Galloanseres) TrevorH.Worthy1*,MiyessMitri1,WarrenD.Handley1,MichaelS.Y.Lee2,3, AthollAnderson4,ChristopheSand5 1 SchoolofBiologicalSciences,FlindersUniversity,Adelaide,SouthAustralia,Australia,2 EarthSciences Section,SouthAustralianMuseum,NorthTerrace,Adelaide,SouthAustralia,Australia,3 Schoolof BiologicalSciences,UniversityofAdelaide,SouthAustralia,Australia,4 ArchaeologyandNaturalHistory, CollegeofAsiaandthePacific,AustralianNationalUniversity,Canberra,AustralianCapitalTerritory, Australia,5 Institutd’ArchéologiedelaNouvelle-CalédonieetduPacifique,BP11423,98802Nouméa Cedex,NewCaledonia *[email protected] Abstract OPENACCESS Citation:WorthyTH,MitriM,HandleyWD,LeeMSY, ThegiantflightlessbirdSylviornisneocaledoniae(Aves:Sylviornithidae)existedonLa AndersonA,SandC(2016)OsteologySupportsa GrandeTerreandIledesPins,NewCaledonia,untilthelateHolocenewhenitwentextinct Stem-GalliformAffinityfortheGiantExtinctFlightless BirdSylviornisneocaledoniae(Sylviornithidae, shortlyafterhumanarrivalontheseislands.Thespecieswasgenerallyconsideredtobea Galloanseres).PLoSONE11(3):e0150871. megapode(Megapodiidae)untilthefamilySylviornithidaewaserectedforitin2005to doi:10.1371/journal.pone.0150871 reflectmultiplecranialautapomorphies.However,despitethousandsofboneshavingbeen Editor:AlistairRobertEvans,MonashUniversity, reportedforthisuniqueandenigmatictaxon,thepostcranialanatomyhasremainedlargely AUSTRALIA unknown.WerectifythisdeficiencyanddescribethepostcranialskeletonofS.neocaledo- Received:November5,2015 niaebasedon~600fossilsandusedatafromthisanditscranialanatomytomakeacom- Accepted:February19,2016 prehensiveassessmentofitsphylogeneticaffinities.Sylviornisneocaledoniaeisfoundto beastemgalliform,distantfrommegapodiids,andthesistertaxontotheextinctflightless Published:March30,2016 MegavitiornisaltirostrisfromFiji,whichwetransfertothefamilySylviornithidae.Thesetwo Copyright:©2016Worthyetal.Thisisanopen speciesformthesistergrouptoextantcrown-groupgalliforms.Severalotherfossilgalloan- accessarticledistributedunderthetermsofthe CreativeCommonsAttributionLicense,whichpermits seresalsoincludedinthephylogeneticanalysisrevealnovelhypothesesoftheirrelation- unrestricteduse,distribution,andreproductioninany shipsasfollows:Dromornisplanei(Dromornithidae)isrecoveredasastemgalliformrather medium,providedtheoriginalauthorandsourceare thanastemanseriform;Presbyornispervetus(Presbyornithidae)isthesistergroupto credited. Anseranatidae,nottoAnatidae;Vegavisiaaiisacrownanseriformbutremainsunresolved DataAvailabilityStatement:Allrelevantdataare relativetoPresbyornispervetus,AnseranatidaeandAnatidae.Sylviornisneocaledoniae withinthepaperanditsSupportingInformationfiles. wasreconstructedhereintobe0.8mtallinarestingstanceandweigh27–34kg.Thepost- Funding:ThisresearchwasfundedbytheAustralian cranialanatomyofS.neocaledoniaeshowsnoindicationofthespecialisedadaptationto ResearchCouncilDECRAprojectDE130101133to THW.TheNationalGeographicSociety,theService diggingseeninmegapodiids,withforexample,itsungualmorphologydifferinglittlefrom desMuséesetduPatrimoine(Département thatofchickenGallusgallus.Theseobservationsanditsphylogeneticplacementasstem Archéologie)andtheAustralianNationalUniversity galliformsmakesitimprobablethatthisspeciesemployedectothermicincubationorwasa (ANU,Canberra)providedfinancialandmaterial mound-builder.Sylviornisneocaledoniaecanthereforebeexcludedastheconstructorof assistancefortheexpeditionthatcollectedthe material.Thefundershadnoroleinstudydesign, tumuliinNewCaledonia. datacollectionandanalysis,decisiontopublish,or preparationofthemanuscript. PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 1/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) CompetingInterests:Theauthorshavedeclared Introduction thatnocompetinginterestsexist. Avianevolutiononislandshasresultedintheevolutionoflargeflightlessformsinmultiple Abbreviations:AM,AustralianMuseum,Sydney, groups[1,2],suchastheninespeciesofratitemoa(Dinornithiformes)ofNewZealand[3], NewSouthWales,Australia;AMNH,American, giantwaterfowl(Anatidae)includingmoa-nalosinHawaii[4]andgeeseinNewZealand[3], MuseumofNaturalHistory,NewYork,U.S.A.; pigeons(Columbidae)intheMascarenes[5,6]andFiji[7],andenigmaticgruiforms(Aptor- ANWC,AustralianNationalWildlifeCollection, Canberra,Australia;IANCP,Institutd'Archéologiede nithidae)inNewZealand(e.g.,[8,9]).Galliformshavealsospawnedgiantflightlessformsin laNouvelle-CalédonieetduPacifique,Nouméa,New thePacific,withthebestknownbeingSylviornisneocaledoniaePoplin,1980fromNew Caledonia;KU,OrnithologyCollection,Universityof Caledonia. KansasBiodiversityInstitute,Lawrence,Kansas,U.S. Sylviornisneocaledoniaewasoriginallydescribedasaratite[10],butitsaffinitiesweresoon A;LACM,VertebrateZoology,NaturalHistory consideredtoliewithmegapodegalliforms[11–15].Despitethousandsofbonesbeingknown MuseumofLosAngelesCounty,LosAngeles, California,U.S.A.;NHMUK,NaturalHistoryMuseum, [14],itsosteologyisincompletelyknownexceptfortheskull,whichwasdescribedindetailby London,UnitedKingdom;NMNZ,MuseumofNew Mourer-ChauviréandBalouet[16],whoconvincinglyshowedthatS.neocaledoniaewasagalli- ZealandTePapaTongarewa,Wellington,New form.However,theyconsideredthesharedfeatureswithmegapodestobesymplesiomorphic Zealand;NMV,NationalMuseumofVictoria, andonthebasisofitsmanyautapomorphies,theyestablishedthemonotypicSylviornithidae Melbourne,Victoria,Australia;QM,Queensland forS.neocaledoniae.Notablefeaturestheseauthorshighlightedincluded:thebroadflattened Museum,Brisbane,Queensland,Australia;SAM, cranium;amassive,dorsoventrallydeep,laterallycompressedrostrumwithalargebonyorna- SouthAustraliaMuseum,Adelaide,SouthAustralia, Australia;USNM,UnitedStatesNationalMuseum, ment;mandiblewithanelongatedsymphysis;andazonaflexoriacraniofacialisthatformsa SmithsonianInstitution,WashingtonD.C.,USA;ant, synovialjoint,hereaftertermedacraniofacialhinge,thattransectsthenasalsearlyinontogeny. anterior;cmc,carpometacarpus;cor,coracoid;cran However,suchautapomorphiesmightnotprecludethistaxonfrombeingembeddedwithinan pt,cranialpart;hum,humerus;fem,femur;fib,fibula; establishedfamilyas,forexample,someratites(e.g.,Casuariussp.)andgalliforms(e.g.Numi- fur,furcula;juv,juvenile;mand,mandible;pt,part; didae)havebonyornamentontheirskull,andsomegalliformshavesuchontheirrostrum rad,radius;scap,scapula;stern,sternum;tib, tibiotarsus;tmt,tarsometatarsus;L,left;R,right;DW, (e.g.some,butnotall,cracids).Billshapeandsizecanberemarkablyvariablewithingroups,as maximumdistalwidth;PW,maximumproximalwidth; wellshownwithinAnatidae,forexample,withextremesseeninlargerflightlesstaxa,suchas SW,mid-shaftwidth;TL,totallength. thelargeflightlessHawaiianmoa-nalos[4].Moreover,reductioninpectoralgirdlecomplexity associatedwithflightlessnessoveralongtimecouldeasilyhaveledtothelossoffeatures.One suchfeaturelikelytobesoimpactedisthecup-likecotylascapularisobservedinstemgalli- forms[17]butabsentinthecrowngroup:itslossinS.neocaledoniaemaynotnecessarily reflectthederivedgalliformstate,contraMourer-ChauviréandBalouet[16].Alsothepost-cra- nialskeletonremainsincompletelydescribed,asPoplinandMourer-Chauviré[12]mainlyhad fragmentarymaterialavailable,sopresacralvertebraeotherthantheatlas,axisandnotarium, arevirtuallyunknown,thehumeruswaspoorlydescribed,andmajorfeaturesofthelegbones includingtheiractualsizeandproportionswereunknown.Theseobservationswereaug- mentedbyBalouetwithasimpleskeletalreconstructionandsomesketchydetails,including thatthepelvishadequallydevelopedtransverseprocessesandalargeilioischiadicforamen,the ribslackeduncinateprocesses,theclavicleswereunfusedsotherewasnofurcula,althoughthe clavicleandcoracoidwerefused,andthattherewerealargenumberofsynsacralandcaudal vertebrae[14]. Knowledgeofthebiologyofthisbirdalsoremainsverylimited.Mourer-Chauviréand Balouet[16]comparedtheskullofS.neocaledoniaetothegiantgastornithidsanddromor- nithids,thedodoandsolitairepigeonsoftheMascarenes,andthemoa-nalosofHawaii,finding significantdifferencesbetweenitandtheselargeherbivores.Whilenotingthepossibilitythatit fedoninvertebratestheyleftopenthequestionoftheprecisedietofS.neocaledoniae,other thanthatitwasveryspecialised.Similarly,nothingisknownaboutitsbreedingbiology.Buton thebasisofthecontemporaryunderstandingthatS.neocaledoniaewasamegapode[11–13], severalauthorsassumedittobeamoundbuilderandthuspotentiallyresponsibleforcon- structingtheenigmaticlargemoundsortumulionLaGrandeTerreandIledesPins(e.g., [18–20]).Megapodesaretheonlybirdsknowntoemployectothermicincubation,thatisdo notbroodtheireggsandrelyonenvironmentalheattoincubatetheireggs[21].Whilst PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 2/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) S.neocaledoniaewasconsideredtobeamegapodethisideahadmerit.IfSylviornisisnolonger consideredacrownoratleaststemmegapode,thenmoundbuildingforeggincubationwould beunlikely. AsecondgiantflightlessgalliformisknownfromFiji.MegavitiornisaltirostrisWorthy, 2000fromVitilevuinFiji,isslightlysmallerthanS.neocaledoniaeandwasdescribedasmega- pode[15].Mourer-ChauviréandBalouet[16]consideredthesimilaritiesbetweenthesetwo species,whichincludearemarkablysimilarcraniofacialhingeandatall,narrowrostrum,tobe convergence.However,thesemorphologicalfeaturesarerareandapparentlyonlydistributed amonggalloanseres,beingelsewhereonlyknowninDromornithidaeandGastornithidae[22– 24],soanyreappraisalofS.neocaledoniaethushastoalsoassessthisaberrantFijiangalliform. Inthiscontribution,wethereforeseektoaddresssomeoftheseknowledgegapsbydescrib- ingthepost-cranialskeletonindetail.Wehaveacollectionof600bonesofS.neocaledoniae representingallskeletalelementsmadebysomeofus(THW,CS,AA)incavesonPindaiPen- insula,NewCaledonia,inJuly2003[25].Detailsofthesitesandchronologyofthedepositsare inAndersonetal.[25].Thematerialreportedpreviously[13,14,16]alsoderivesfromcaves onPindaiPeninsula,butintheabsenceofanysitedescriptionsbyBalouetetal.,itisnot knownwhetheritderivedfromoneofthesixcavessurveyedbyAndersonetal.[25],or another.ThematerialdescribedhereallderivesfromseparatesitesinCaveB[25].Weuse thesespecimenstointerpretthemorphologyofS.neocaledoniaeinacomprehensivephyloge- neticanalysisofbothcranialandpostcranialcharacterstoestablishtherelationshipsofthis strangebird,andtherebytestthehypothesesthatthisspeciesis(1)agalliformand(2)warrants itsownfamilyseparatefrommegapodes.Indoingso,suchaphylogeneticanalysiswillshed lightonwhetherS.neocaledoniaebuiltmoundsorusedectothermicincubation.Wewillfur- thertestthispossibilitywithinthecontextoftheskeletaldescriptionbyexaminingthefunc- tionalcapacityofS.neocaledoniaetoactuallyundertakeextensivediggingasdomegapodes.A cursoryexaminationofsomefeatures,suchastheunguals,showsthattheydiffergreatlyfrom thoseofmegapodesthatconstructlargemounds,e.g.Megapodiusspp.Thusinthecontextof theskeletaldescription,wehavepaidparticularattentiontofeaturesthatmayimpacton,or constrain,itsdiggingability,andcompareittomound—andnonmound—buildingmega- podesandchickensGallusgallus. MaterialsandMethods Nomenclature WefollowthenomenclatureandtaxonomicorderinDickinsonandRemsen[26].Namesfor specificbonelandmarksfollowBaumelandWitmer[27]unlessotherwiseindicated.Anatomi- callandmarksareabbreviatedinfigurecaptions.Somecommonanatomicaltermsareabbrevi- atedasfollows:artic.(articularis);cond.(condylus);lig.(ligamentum);m.(musculus);proc. (processus). FossilMaterial ThefossilsofS.neocaledoniaereportedherewascollectedbysomeofus(THW,CS,AA)in cavesonPindaiPeninsula,NewCaledonia,inJuly2003[25].Detailsofthesites,theirloca- tions,excavationstherein,andchronologyofthedepositsaregiveninAndersonetal.[25]. ThematerialdescribedhereallderivesfromseparatesitesinCaveBat21°21'005"S,164°57' 50.5"E[25].TheexcavationswereconductedwiththeauthorisationoftheNorthernprovince PresidentPaulNéaoutyineandtheculturalauthoritiesandtheagreementofthecustomary authoritiesofthetribesofthePoyaandPouemboutregion.AlltheSylviornisneocaledoniae materialdescribedbelowispartofthecollectionsofInstitutd'ArchéologiedelaNouvelle- PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 3/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) CalédonieetduPacifique,Nouméa,NewCaledonia.AllIANCPcataloguenumberscitedin thispaperhavetheprefix‘IANCP.PN/WNP011.PA/1.2003/’,whichisabbreviatedto‘IANCP’ herein.TheSylviornismaterialiscataloguedintherange526–1088asdetailedinthedescrip- tivesection. ComparativeMaterial Palaeognathae:Fossiltaxa.LithornispromiscuusHoude,1988[28]–USNM391983,336535, 424072;LithornisplebiusHoude,1988[28]–USNM336534–holotypeskeleton;Paracathartes howardaeHarrison,1979[29]–USNMspecimens:cranium–361415;premaxilla–404758; mandible–361437–9,404806;quadrate–424067;palatine/pterygoid–391984;vertebrae,C2– 404756,C3–361428–9;404747–8,404906;2Lcoracoids–361416–417;LRscapula–361418–9; 2Rhumerus–361420,361421;radius—L361424,proximalparts–361422–3,361441;ulnae—R 361425,L361426,R361427;LRcarpometacarpus–361445–6;Rfemur–361412;tibiotarsi—L 361407,R361408,d+pL361409,distal361410,pR361411,R404749,dL361409;5fibula– 361413–4,361442,361444,404750;tarsometatarsus—R361402,L361403,L361404,R 361405,L361406,L404747,L404748,361407,ungualphalanges–404069,404789,404797; DinornisrobustusOwen,1846[30]–NMNZS.163,23342,23654,28225,32667.Extanttaxa: Tinamusmajor(=robustus)–SAMB.31339,USNM347794,621694;Struthiocamelus–SAM B.10941,11411,31336;LACM99638;Dromaiusnovaehollandiae–SAMB.6863,6898,7068, 31580,31581. FossilGalliformes:MwalauwalterliniiWorthyetal.,2015[31]–seespecimenslistedin Worthyetal.[31];MegavitiornisaltirostrisWorthy,2000–seeNMNZspecimenslistedin Worthy[15];ProguranaracoortensisvanTets,1974–SAMP16700,17152–17154,17856– 17857,17876–17879,18181–18187,36710–36716,52473–52502;ProguragallinaceaDeVis, 1888–QMF1132,1134,1139,1143,5553,5556–5558,7005,7033. ExtantGalliformes(alphabetical):Acrylliumvulturinum–LACM88965F,90645M,SAM B23933;Aepypodiusarfakianus–ANWCO26042;Aepypodiusbruijnii–USNM146767;Alectura lathami–SAMB46568,NMVB2209,B4288,B11471,B19290,B23648,B23649,B23650,QM O27218,QMO27843,QMO27844,QMO27852;Coturnixpectoralis–SAMB49460;Crax rubra–LACM113548,101626;USNM288713,19918;Eulipoawallacei–USNM558275;Gallus gallus–SAMB11484,B46451,NMVB6363,B12748,B25087,QMO29536;Leipoaocellata– SAMB414,B1094,B5039,B11480,B11481,B11482,B47825,B48526,B48765,B49461, B51215,B55458,B55528,B58520,B58560;Macrocephalonmaleo–AMNH12013(byphotos taken2000byJ.Palmer),NHMUK1891.7.20.97,1871.7.21.1;USNM225130;Megapodiusere- mita–NMVB20648,(andB20641,B20642,B20647,B24000,B24947,B24948,B24949,B24950, B24951,B24952,B25389);Megapodiusreinwardt–ANWCO22869;Ortalisvetula–KU13342, USNM19632,288721,288722;Talegallafuscirostris–KU97007,ANWCO3669;Talegalla jobiensis–USNM146744,ANWCO7567. FossilAnseriformes:PresbyornispervetusWetmore,1926[32].Skull:USNM299846, 618166,618202.Premaxilla:USNM510082,299845(6noseslab).Mandible:USNM299847, 618169,618215.Quadrate:USNM498770.Thoracicvertebrae:USNM616555(specimenon smallslab),618205,618207.Sternum:USNM618212,618214.Scapula:USNM616557– 616560–4specimens,618223—1L.Coracoid:USNM618183–left,616561–616564–4sternal parts,616565–616567–3omalparts.Humerus—USNM483163castL,USNM616568–ptR hum,618204–completeLonslab,618180–dL.Ulna—USNM616569–616571—3pL,616572 —1pR,616573&616574—2dR.Carpometacarpus—USNM616168–leftonslab,618226— 1pL,618227—1pR.Femur:USNM618228–completeR,618229—1dL,618230–618232—3dR, 618233–4—2pL,618235—1pR.Tibiotarsus:USNM483165–castR,618192–618196—5dL, PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 4/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) 618236—1dR.Tarsometatarsus:USNM483166cast,USNM618175–dR,618176–dR,618177 –R,618178–pR(4parts),618213–R;618237–proximal.Pelvis:USNM618167–Rilioischial complexexternalviewonslab,618172–Lilioischialcomplexinternalviewonslab,618198– synsacrum.AnatalavisoxfordiOlson,1999–seeOlson[33];DromornisplaneiRich,1979[34]– seeMurrayandMegirian[23]andMurrayandVickers-Rich[24]. ExtantAnseriformes:Chaunatorquata–USNM631124,614549,428074;Anhimacornuta– MVB.12574;Anseranassemipalmata–SAMB36790,B48035;Dendrocygnaeytoni–SAM B45769;Cereopsisnovaehollandiae–SAMB39638,49165;Ansercaerulescens–SAMB36868; Malacorhynchusmembranaceus–SAMB39384,B39385,B39639;Tadornatadornoides–SAM B.39583,39872. Neoaves:Burhinusgrallarius–SAMB.49554,B.48793;Porphyriomelanotus–SAMB.49644; Grusrubicunda–SAMB.49462. Measurements Allmeasurementsaremadewithdialcallipers(TESA)androundedtonearest0.1mm.Mea- surementsareeitherasdescribedinthetextor,forthe56variablesusedinaPCA,areasgiven inS1File. Statisticalanalyses SummarystatisticsformeasurementsweregeneratedinMicrosoftExcel.PrincipalComponent Analyses(PCA)wereconductedinPASTv3.08[35]toinvestigatehowtheshapeofthetarso- metatarsusandphalangesvariedamongthecomparedspeciestofacilitateapredictionofthe diggingcapabilityofSylviornisneocaledoniae.Weassumethatdiggingcapabilityisaproxyfor thepotentialtobuildmounds.Wethereforeassembledmeasurementsfrommultipleindividu- alsofarangeofmegapodeswithvaryingmound-buildingability,fromthosenotknownto buildmound(e.g.Macrocephalonmaleo)tothosethatbuildlargemounds(e.g.Megapodius sp.)andcomparedthesetodataforS.neocaledoniaeandGallusgallus(S1File).Becausethere isnoindividualofSylviornisneocaledoniaetocomparetotheseindividuals,weconstructedan averageS.neocaledoniae‘individual’usingmeandataforallthevariablesfromTables1–21. Thetaxavariedgreatlyinsize,withS.neocaledoniaebeingmanytimeslargerthanallofthe extantmegapodes,thereforeinitialPCAplotsofuntransformeddatashowedS.neocaledoniae widelyseparatedonPC1fromallothertaxa,whichweretightlygrouped.Astheaimofthe analysiswastoassesshowshapevariedamongthesetaxaregardlessofsize,westandardized thedatatosizeofthebirdbydividingallvaluesbyfemurlength.Femurlengthistightlycorre- latedwithmass(e.g.,[36,37]),thereforethistransformationwillreducethemeasurementstoa functionofbirdsize,whilepreservingdifferencesinshapeorrelativeproportionsofthedistal leg.Missingdatawasanissue,especiallywhererarespecieswererepresentedby1to3speci- mense.g.,Eulipoawallacei,M.maleoandMegapodiusreinwardt,andmanyspecimenstended tohavethehornycoverstillontheunguals.Wethereforerestrictedmeasurementstothose mostoftenavailableandonlymeasuredtheproximalphalangesandungualsI.2andIII.4. Wheremissingdatawereunavoidable,weutilisedtheiterativeimputationmethodinPAST v3.08wheremissingvaluesareatfirstreplacedbytheircolumnaverage,thenaninitialPCA runisusedtocomputeregressionvaluesforthemissingdata.Thisprocedureisiterateduntil convergence,seeIlinandRaiko[38].Weaddedtothesize-transformeddataaseriesofratios designedtocapturetherelativelengthsofphalangesasaproportionofthetarsometatarsus andalsoaratioofwidthanddepthoftheungualsatmidlengthtocapturethevaryingdegree ofdorsoventralflatteningevidentintaxa.SeeS1Fileforanalysisdetails. PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 5/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) Massestimatesweremadeusingfemoralmid-shaftcircumference,whichforS.neocaledo- niaeistheleast-shaftshaftcircumference,andthealgorithmsproposedbybothCampbelland Marcus[36]andFieldetal.[37]. Phylogeneticanalyses Theprimarypurposeofthephylogeneticanalysisemployedherewastoexaminetherelation- shipsofSylviornisneocaledoniae.Thisspecieswasoriginallydescribedasaratite[10],but affinitieswithmegapodeswerequicklyestablishedandwidelyaccepted[11–16]untilMourer- ChauviréandBalouet[16]establishedamonotypicSylviornithidaeforit.Datamatriceshave beencompiledtoexaminethephylogeneticrelationshipsofpalaeognaths[39–40],anatids [41],galliforms[42–44],butnoneontheirownaresuitabletoassessthoseofapotentially basalgalloanserinetaxon. Wedevelopedasetof285characters(S2File)derivedfromdirectcomparisonofspecimens, andfromtheliterature[mainlyfrom39,41,42,44–54].AsperWorthyandScofield[39],we followedtwoguidingprinciplesthat:(1)thecharactersmustasfaraspossiblerelatetoasingle morphologicalfeatureorcomplexthatisputativelyhomologousacrossallingroupandout- grouptaxa;and(2)characterstatedefinitionshouldcapturethefullrangeofvariationacross thetaxaanalysed.Followingtheseprinciplesandbecauseourtaxonsampledifferedfromany previouslyused,werevisedallcharacters,sometimessubstantiallyfromthoseofpreviousdefi- nitions.Thecharactersusedwerethoseidentifiedaspotentiallyrelevanttorelationshipswithin Galloanseres.Therefore,charactersfrom,forexample,Ericson[48]andMayrandClarke[49], withstatesthatwereconstantforcrownandstemgalloansereswerenotused.ThatGalloan- seresisthesistergrouptoNeoavesiswellestablishedusingbothmorphological[48,49,55] andmoleculardata(e.g.,[56–58])andsoexaminingthatrelationshipwasnottheaimofthe presentwork. WeassembledataxonsetthatsampledpalaeognathsandNeoavesastwosuccessivelycloser outgrouptaxa,andaningroupencompassingarangeofanseriformandgalliformtaxa(gal- loanseres)withafocusonmorebasaltaxa,andincludingkeyfossils.Becauseofpervasive problemsofhomoplasyamongratitepalaeognathsrelatedtolossormarkedreductionof wingsandlargesizeoflegbones,weincludedthreespeciesoflithornithids,whicharevolant Eocenepalaeognaths.Theirage(55–48Maold:[28])meanstheyareseparatedfromthecom- monancestorofcrowngalloanserinesbylessbranchlength(andthus,potentiallylessmorpho- logicalevolution)thanareanyextantpalaeognathsorNeoaves.Inthephylogeneticallyfurthest (palaeognath)outgroup,wealsoincludedatinamou,andthreeratites(Struthiocamelus,Dro- maiusnovaehollandiaeandDinornisrobustus). Thephylogeneticallyclosestoutgroup,andimmediatesistergrouptogalloanseres,included threeNeoaves(Burhinusgrallarius(Charadriiformes),andPorphyriomelanotusandGrusrubi- cunda(Gruiformes)),chosenfortheirsemi-terrestrialhabitstominimisemorphologicaldis- paritywiththegalloanseres. WithinGalloanseres,wesampled27extantandfossiltaxa.Thefollowingextanttaxawere included:sevenspeciesinsixgeneraofMegapodiidae,sixothergalliformsrepresentingNumi- didae,Cracidae,andPhasianidae,AnseranassemipalmataforAnseranatidae,Chaunatorquata andAnhimacornutaforAnhimidae,andCereopsisnovaehollandiae,Ansercaerulescens,Den- drocygnaeytoni,Malacorhynchusmembranaceus,andTadornatadornoidesinAnatidae.To theseweaddedthefollowingfossiltaxa:Sylviornisneocaledoniae,thegiantFijianMegavitiornis altirostris,describedbyWorthy[15]asamegapode,anextinctmegapodefromVanuatu (Mwalauwalterlinii;[31]),theEoceneanseriformPresbyornispervetus(see[48,59]),thelate CretaceousVegavisiaai(see[60]),andtheAustraliandromornithidDromornisplanei,which PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 6/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) iscurrentlyconsideredananseriform(see[23,24]).Allcharacterscoringwasbydirectexami- nationofspecimenslistedinComparativeMaterial,exceptforV.iaai,whichwasscoredfrom publisheddescriptions[60,61].Anatalavisoxfordiwasinitiallyalsoincluded,scoredfrom Olson[33]andphotographsprovidedbyGarethDyke,butthistaxonactedasawildcard greatlyreducingtreeresolutionandsupport,andwasthereforeexcluded. (cid:1) Thetaxon-charactermatrixwasanalysedwithparsimonyusingPAUP 4.0b10[62]and BayesianinferenceusingMrBayes3.2.5[63].TheexecutabledatamatrixwithPAUPand MrBayescommandsisappendedasS3File.Treeswererootedbetweenpalaeognathsandall othersampledtaxa.BothparsimonyandBayesiananalyseswereperformed(1)withmultistate charactersorderediftheyformedmorphoclines(seeS2File),or(2)allunordered.Thestates for60charactersmarkedwithanasteriskinS2Filewereidentifiedasformingmorphoclines andsoweretreatedasorderedinsomeanalyses. Withthefulltaxonsetof27ingroupand10outgrouptaxa,theNeoavestaxaandthelithor- nithidsandtinamouwereattractedtothestemoftheanseriformlineage,inconsistentwiththe well-supportedmonophylyofpalaeognaths,andtheknownsistergrouprelationshipof Neoaveswithgalloanseres(e.g.,[56–58]).Thiswasnotunexpectedbecauseoftworeasons:1, theknownproblemswithhomoplasywithinlargeflightlessratites[39–40]thatwasexacer- batedbymuchmissingdata(e.g.pectoralgirdleelementsnotscorableformanycharacters); and2,thatthedatasetwasmainlyconstructedtodifferentiategalloanseres,with(asnoted above)exclusionofcharactersinvariantamonggalloanseres,whichwouldpotentiallyhelp resolveingroup-outgrouprelationships.Weconsiderthataseparatecharacterssetisrequired toteaseouthigherrelationshipsofbirdsfromthosedesignedtoaddressthoseofspecific groups,asexemplifiedbyEricson[48]andClarkeetal.[60].Ratherthanconstructanentirely newanalysisanddatasetaimedatresolvingingroup-outgrouprelationships,weperformedthe analyseswith(1)amolecularbackboneenforcingrelationshipsbetweenextanttaxasupported bygeneticstudiesand(2)constraintsenforcingthewell-corroboratedingroupandoutgroup relationshipsdiscussedabove,e.g.,(palaeognaths((Neoaves)(galloanseres)). Themolecularbackboneemployedbelowconstrainstaxawithmoleculardata(allliving taxaplusmoaDinornis)torelationshipssupportedbythisgeneticdata,withfossils(Mwalau walterlinii,Dromornisplanei,Sylviornisneocaledoniae,Vegavisiaai,Presbyornispervetus,and thethreelithornithidspecies)freetomovewithinthisbackbonetotheiroptimalpositions basedonmorphologicaldata.Thisapproachensuresfossiltaxaareplacedwithinaphyloge- neticframeworkoflivingtaxawhichisrobustlysupportedby(oftenlarge)amountsofavail- ablemolecularevidence.Thefollowingstudieswereusedtoconstructthemolecularbackbone: AvesandNeoaves[55–58],Palaeognathae[40–64],Galliformes[65],andAnseriformes [66–68]. Parsimonyanalysestreatedallchangesasequal("unweighted")andusedheuristicsearches withtree-bisection-reconnection(TBR)branchswappingandotherdefaultsettings,and1000 randomadditionreplicatespersearch.Whencalculatingtreelengths,multistatetaxawere treatedaspolymorphismsratherthanambiguity.Gapsweretreatedasmissingdata.Strictcon- sensustreeswerecomputedfromthesetofmostparsimonioustrees,andcladesupportwas assessedbybootstrapping[69]usingthesamesettingsand1000replicates.Topreventthe bootstrapanalysesfromgettingstuckonreplicateswithhugenumbersofequally-parsimoni- oustrees,nchuckwassetto2000. BayesiananalysesusedtheMarkovmodelofmorphologicalevolution[70]asimplemented inMrBayes[62].BayesFactors(twicedifferenceinmarginallog likelihoods)ascalculated n usingstepping-stoneanalyses,stronglyfavouredincludingthegammaparameterforaccom- modatingratevariationacrosscharacters(BF=65.48fortheanalyseswithorderedcharacters andmolecularbackbone).The‘coding=inf’commandwasusedtocorrectforunder-sampling PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 7/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) ofinvariantandautapomorphiccharacters.Strengthofsupportwasassessedusingposterior probability. Results Descriptionofthepost-cranialskeletonofSylviornisneocaledoniae Vertebrae. Atlas,(Fig1A,1F,1K,1P,1a,1f,1kand1p): Material:IANCP617,complete;IANCP618(Fig1),complete;IANCP619,nearcomplete, missingtherightprocessusartic.caudalis. Measurements(mm)inorderofspecimenslisted,withadashforunmeasurable:length midlineofcentrum,7.0,6.8,10.9;widthacrosszygapophysiscaudalis,24.8,25.7,-;maximum widthfossacondyloidea,13.0,12.7,12.0;maximumwidthfaciesartic.axialis,17.3,16.7,16.2; heightatmid-widthfaciesartic.axialis,10.6,10.6,12.3;widthforamenvertebrale,12.0,10.9, 12.7;maximumheight,25.2,28.3,29.6. TheatlaswasbrieflydescribedbyPoplinandMourer-Chauviré[12].Itisrelativelyshort, beingaboutthreetimestallerthanitiscraniocaudallylong,althoughthearcusatlantisisonly littleexpandeddorsallyoverthewidthofthecorpusatlantis(Fig1aand1k).Thecorpusatlan- tishassubparallelsidesinitscaudalsectionthatframethenear-circularfossacondyloideain cranialaspect(Fig1k).Theincisurafossaeisbroad,buttheforamenvertebraleisrelativelynar- row,beingonlyslightlybroaderthanthefossacondyloidea.Theatlaslacksforaminatransver- saria.Theprocessusartic.caudalesarerobust,lateromediallythickerthantheyarecaudally projecting,andareroundedcaudallyinlateralview(Fig1fand1p).Thefaciesartic.zygapoph- ysescaudalesaredistinct,yetsmallat5mmlongby4mmwide(Fig1k).Theincisura arcuscaudalisisshallow(Fig1p).Thereisnodistinctprocessusventralismedially,butin IANCP618,thereisasmallmedianpointcaudallyandinIANCP619theprocessusventrolater- alesareconnectedmediallycreatingaslightventralprojection.Thereisapairofprocessusven- trolateralesthatarecaudoventrallydirectedandprojectlesscaudallythantheyarewide;they areusuallyseparatedbyashallownotchmedially(Fig1kand1p). Axis,(Fig1B,1G,1L,1Q,1b,1g,1land1q):Material:IANCP620,complete;IANCP623 (Fig1),complete;IANCP624,nearcomplete,worncranially.Ofthese,IANCP620isofappro- priatesizeandsimilarpreservationtoINACP619(atlas)andthefollowingcervicals,3 (IANCP621),4(IANCP622),and5(IANCP631),arelikelytobefromoneindividual. Measurements(mm)inorderofspecimenslisted:Lengthmidlineofcentrumexcluding dens,28.3,25.6,-;widthacrosszygapophysiscaudalis,47.5,44.8,42.0;maximumwidthfacies artic.atlantica,estimatedat16.0,17.0,-;maximumwidthfaciesartic.caudalis(atdorsalside), 11.4,8.7,10.1;heightfaciesartic.caudalisincludingprocessusventralis,19.8,16.2,15.3;total maximumheight,49.8,46.0,45.4. TheaxiswasbrieflydescribedandfiguredbyPoplinandMourer-Chauviré[12].Itisdorso- ventrallydeeperthanitiswideandischaracterisedbyamassivedorsoventrallythickened arcusaxialisconnectingtheprocessusartic.caudalis(Fig1band1l).Thecorpusvertebrais caudallynarrowerthanitisdeep,lacksbothafoveacranioventralisandafoveacaudoventralis, andlaterallyhasaroundedprominenceatmid-depthjustcaudaltothecranialmargin(Fig1l). Thefaciesarticularisatlanticaisbroaderthandeep,andshallowlyconcave(Fig1b).Thedens isbroaderthandeepandnarrowscranially(Fig1g).Thefaciesarticulariscaudalisisheterocoe- lusanddeeperthanwide,butisdirecteddorsally(Fig1land1q).Theprocessusspinosusis low,formingarobustcrestcranially,butmergescaudallywithagreatlythickenedcaudalside tothearcusaxialis,suchthatincaudalviewthearcusaxialisandprocessusartic.caudalisform anevencurve(Fig1gand1q).Therearenoforaminatransversariaandprocessuscostalesare absent.Theforamenvertebraleislaterallycompressedcranially,butcircularincaudalview. PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 8/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) Fig1.Vertebrae1–5ofSylviornisneocaledoniae.(A-E,a-e)anterior,(F-J,f-j)dorsal,(K-O,k-o)posterior,and(P-T,p-t)leftlateralviews.Photographs (A-T)andinterpretivedrawings(a-t):Vertebra1,atlas,IANCP618(A,F,K,P);vertebra2,atlas,IANCP623(B,G,L,Q);vertebra3,IANCP621(C,H,M,R); vertebra4,IANCP622(D,I,N,S);vertebra5,IANCP631(E,J,O,T).Abbreviations:aat,arcusatlantis;aax,arcusaxialis;ac,ansacostotransversaria;ale, arealig.elastici;ave,arcusvertebrae;ca,corpusatlantis;faa,faciesarticularisatlantica;fac,faciesartic.caudalis;facr,faciesartic.cranialis;fazc,facies artic.zygapophysiscaudalis;fazcr,faciesartic.zygapophysiscranialis;fc,fossacondyloidea;fcr,foveacranioventralis;forac,foramenarcocostalis PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 9/62 OsteologyandRelationshipsofSylviornis(Aves:Sylviornithidae) cranialis;fort,foramentransversarium;fv,foramenvertebrale;iac,incisuraarcuscaudalis;pac,proc.artic.caudalis;pc,proc.costales;ps,proc.spinosus; pv,proc.ventralis;pvl,proc.ventrolaterale;tub,tuberosity.Cross-hatchingismissingbone. doi:10.1371/journal.pone.0150871.g001 Thefaciesartic.zygapophysescranialesaregracileprojectionsonthearcusvertebraeatmid- depthoftheforamenvertebraleandareabout5mmlongby4mmhighinIANCP623(Fig1b and1q).Thefaciesartic.zygapophysescaudalesarenearcircularfacetsabout10mminwidth thataredirectedventrallyfromtherobustprocessusartic.caudalis(Fig1land1q).Theproces- susartic.caudalishaveadistinctgroovealignedcraniocaudallyontheircaudalmargin(Fig1b and1l).Thecaudalfaciesofthearcusaxialisdorsaltothefaciesarticulariszygapophysescau- dalesisnearplanarandatrightanglestotheventralsideofthecorpus(Fig1land1q).The arcusaxialisisnarrowwhereitjoinsthecorpusvertebrae,butwidensmarkedlydorsally.There isadeepincisuraarcuscaudalisbutnoincisuraarcuscranialisbelowthezygapophysescrania- lis(Fig1q).Theprocessusventralisisbroadandrobust,withgreatestprojectionatthecaudal endofthecorpus,butitisofvariabledepthinthethreespecimens(Fig1q).Thearcusaxialis haspneumaticforaminapenetratingitcraniallyatthejunctionwiththecorpusasnotedby wasbrieflydescribedbyPoplinandMourer-Chauviré[12],butthesearevariablypresenteven oneachsideofanindividual,e.g.IANCP623hasalargeforamenontherightsidebutnoneon theleft(Fig1q). Anteriorcervicals,vertebra#3,(Fig1C,1H,1M,1R,1c,1h,1mand1r):Material:IANCP621 (Fig1),complete;IANCP625,incomplete,missingpartoftheleftside. Measurements(mm)inorderofspecimenslisted:Lengthcentrumfromcranial-mostpoint totheventralsideoffaciesartic.caudalis,31.7,31.0;widthacrosszygapophysiscranialis,-, 38.5;widthacrosszygapophysiscaudalis,52.1,46.1;maximumwidthfaciesartic.cranialis, 13.7,12.0;maximumwidthfaciesartic.caudalis,12.7,-;heightfaciesartic.caudalistoventral sideprocessusventralis,15.9,-;maximumheighttakenparalleltoforamenvertebrale,46.0,-. Vertebrathree,asbestexemplifiedbyIANCP621,iswiderthanhigh,andindorsalview widenscaudally.Thecorpusvertebrahasamarkedfoveacranioventralisforreceptionofthe upturnedfaciesartic.caudalisoftheaxisvertebra(Fig1c).Itislateromediallycompressed.The faciesarticulariscranialisismuchbroaderthandeepanddirectedcranioventrally(Fig1c).The faciesartic.caudalisisheterocoelousanddirectedslightlydorsallyfromtheplaneofthefora- menvertebrale.Theprocessusspinosusisindistinctand,asfortheaxis,thearcusvertebraeis veryrobustandarchesbetweentheprocessusartic.zygapophysescaudalesformingabroad anddeepnearplanarcaudalfaciesabovethem(Fig1mand1r).Inthecentreofthisplanarcau- dalfaciesisasmall(9mmhigh,7mmwide)arealigamentielasticifortheinsertionofliga- mentslinkingtovertebrae4(Fig1m).Therearestronglyenclosedforaminatransversaria about10mminlength(Fig1m).Theansacostotransversariabearsashortventralprocessus butlacksaprocessuscostalis,soisroundedcaudallyinlateralview(Fig1r).Dorsallyatmid- lengththereisasmallcircularforamenarcocostaliscranialis,whichpassesthroughtothecau- dalsideofthefaciesarticulariscranialis(Fig1h).Theforamenvertebraleisslightlylaterome- diallycompressedincranialviewbutcircularincaudalview.Thefaciesartic.zygapophyses cranialesareslightlylonger(11–12mm)thanwide(8–10.5mm),andpointedmediocranially, althoughtheirmarginsarenearcircularelsewhere(Fig1c).Thefaciesartic.zygapophysescau- dalesarenearcircularandwiderthanlong(Fig1m).Thearcusvertebra,likefortheaxis,isnar- rowatthejunctionwiththecorpusandbroadensdorsally.Theincisuraarcuscaudalisis shallowerthanintheaxis(Fig1r).Theprocessusventralisisbroadandrobust,largestcaudally, andextendsventrallyadistanceequivalenttoathirdofthedepthofthefaciesartic.caudalis (Fig1mand1r).Therearesmallpneumaticforaminapenetratingthearcusvertebraewithin PLOSONE|DOI:10.1371/journal.pone.0150871 March30,2016 10/62
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