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Oncogenic Viruses, Volume 2: Medical Applications of Viral Oncology Research PDF

417 Pages·2022·7.035 MB·English
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Oncogenic Viruses Volume 2 Medical Applications of Viral Oncology Research Graphical abstract MoulayMustapha Ennaji Oncogenic Viruses Volume 2 Medical Applications of Viral Oncology Research Edited by Moulay Mustapha Ennaji Group Research Leader Teamof Virology, Oncology, and Biotechnologies, Head of Laboratoryof Virology, Oncology, Biosciences, Environment and New Energies(LVO-BEEN),Facultyof Sciences and Techniques Mohammedia,University Hassan II of Casablanca,Casablanca, Morocco AcademicPressisanimprintofElsevier 125LondonWall,LondonEC2Y5AS,UnitedKingdom 525BStreet,Suite1650,SanDiego,CA92101,UnitedStates 50HampshireStreet,5thFloor,Cambridge,MA02139,UnitedStates TheBoulevard,LangfordLane,Kidlington,OxfordOX51GB,UnitedKingdom Copyright©2023ElsevierInc.Allrightsreserved. Nopartofthispublicationmaybereproducedortransmittedinanyformorbyanymeans, electronicormechanical,includingphotocopying,recording,oranyinformationstorageand retrievalsystem,withoutpermissioninwritingfromthepublisher.Detailsonhowtoseek permission,furtherinformationaboutthePublisher’spermissionspoliciesandour arrangementswithorganizationssuchastheCopyrightClearanceCenterandtheCopyright LicensingAgency,canbefoundatourwebsite:www.elsevier.com/permissions. Thisbookandtheindividualcontributionscontainedinitareprotectedundercopyrightbythe Publisher(otherthanasmaybenotedherein). MATLABsisatrademarkofTheMathWorks,Inc.andisusedwithpermission.TheMathWorks doesnotwarranttheaccuracyofthetextorexercisesinthisbook.Thisbook’suseordiscussion ofMATLABssoftwareorrelatedproductsdoesnotconstituteendorsementorsponsorshipby TheMathWorksofaparticularpedagogicalapproachorparticularuseoftheMATLABs software. Notices Knowledgeandbestpracticeinthisfieldareconstantlychanging.Asnewresearchand experiencebroadenourunderstanding,changesinresearchmethods,professionalpractices,or medicaltreatmentmaybecomenecessary. Practitionersandresearchersmustalwaysrelyontheirownexperienceandknowledgein evaluatingandusinganyinformation,methods,compounds,orexperimentsdescribedherein. Inusingsuchinformationormethodstheyshouldbemindfuloftheirownsafetyandthesafety ofothers,includingpartiesforwhomtheyhaveaprofessionalresponsibility. Tothefullestextentofthelaw,neitherthePublishernortheauthors,contributors,oreditors, assumeanyliabilityforanyinjuryand/ordamagetopersonsorpropertyasamatterof productsliability,negligenceorotherwise,orfromanyuseoroperationofanymethods, products,instructions,orideascontainedinthematerialherein. ISBN:978-0-12-824156-1 ForInformationonallAcademicPresspublications visitourwebsiteathttps://www.elsevier.com/books-and-journals Publisher:StacyMasucci AcquisitionsEditor:KattieWashington EditorialProjectManager:TracyI.Tufaga ProductionProjectManager:SwapnaSrinivasan CoverDesigner:MatthewLimbert TypesetbyMPSLimited,Chennai,India Contents Listofcontributors xv Abouttheeditor xix Preface—OncogenicViruses:UpToRecentKnowledge xxi Acknowledgments xxv 1. Vitamin D new therapy for breast cancer prevention 1 MarwahLabyed,NajwaHassou,MohammedElMzibriand MoulayMustaphaEnnaji 1.1 Introduction 1 1.2 Breastcancer 2 1.2.1 Generality 2 1.2.2 Anatomy 2 1.2.3 Symptoms 3 1.2.4 Breastcancertypes 4 1.2.5 Riskfactors 5 1.3 Viraletiologyofbreastcancer 8 1.4 Mousemammarytumorviruslike 8 1.5 Humanpapillomavirus 9 1.6 Epstein(cid:1)Barrvirus 9 1.7 VitaminD 10 1.7.1 Generality 10 1.7.2 Biosynthesis 11 1.8 Foodneedsandsources 12 1.9 Storagesites 13 1.10 VitaminDreceptors 13 1.11 VitaminDnewtherapyforbreastcancersprevention 14 1.11.1 RelationshipbetweenvitaminDandbreastcancer 14 1.12 Mechanismofaction 14 1.13 VitaminDandbreastcancerprevention 15 1.14 Conclusion 16 References 16 2. Molecular diagnosis of human papillomavirus related to cervical cancer 23 KaoutarAnouarTadlaouiandMoulayMustaphaEnnaji 2.1 Introduction 23 v vi Contents 2.2 Etiopathogenesisofhumanpapillomavirusinfection 24 2.2.1 Humanpapillomavirusgenomestructure 24 2.2.2 Mechanismofhumanpapillomavirusinfectioninthe cervixandcarcinogenesis 25 2.3 Diagnosisofhumanpapillomavirusviralgenome 26 2.3.1 Identificationofhumanpapillomaviruswithout genotyping 27 2.3.2 Humanpapillomavirusgenotyping 30 2.3.3 HumanpapillomavirusE6/E7mRNAandprotein detection 34 2.4 Conclusion 34 Acknowledgment 35 References 35 3. Risk of the development of cancers induced by the consumption of mussels accumulating metallic trace elements 39 Hanaaˆ Bazir,NajwaHassou,MohammedNabilBenchekroun, HlimaBessiandMoulayMustaphaEnnaji 3.1 Introduction 39 3.2 Tracemetalelements 41 3.2.1 Originandcycleoftracemetalelementsinthenatural environment 41 3.2.2 Propertiesoftracemetalelements 41 3.2.3 Transferoftracemetalelementsinthetrophicchain 48 3.2.4 Effectsofmetaltoxicityonhumanhealth 49 3.3 Bivalvemolluscs 49 3.3.1 Classificationoflamellibranchs(bivalves) 50 3.3.2 Themytilidaeasbioindicators 51 3.3.3 Responseofmarineorganismstotracemetalelements 52 3.4 Oxidativestressandcancer 54 3.5 Conclusion 55 Acknowledgments 55 References 56 4. Oncolytic virus cancer therapeutic options and integration of artificial intelligence into virus cancer research 61 VaishakKaviarasan,BarathRagunathand RamakrishnanVeerabathiran 4.1 Introduction 61 4.2 History 62 4.3 Generalpropertiesofoncovirus 63 4.4 Oncolyticviraltherapy:aneweraoftreatment 63 Contents vii 4.4.1 Cancerimmunoeditinghypothesis 63 4.4.2 Pharmacokineticsofoncolyticviraltherapy 64 4.5 Applicationsofoncolyticviraltherapy 66 4.5.1 Diagnosis 67 4.5.2 Tumortargetedcelldeliverybyoncolyticvirotherapy 69 4.5.3 Geneticallymodifiedoncolyticvirus 70 4.5.4 Integrationofoncolyticviraltherapyinradiotherapy 70 4.5.5 Integrationofoncolyticviraltherapyinchemotherapy 71 4.5.6 Integrationofoncolyticviraltherapywithimmune inhibitorcheckpoints 71 4.6 Limitations 71 4.7 Integrationofartificialintelligenceormachinelearninginto cancerresearch 72 4.8 Futureconcerns 73 4.9 Conclusion 74 Acknowledgment 74 References 74 5. Oncoviruses: future prospects of molecular mechanisms and therapeutic strategies 81 IyshwaryaBhaskarKalarani,KamilaThasneemand RamakrishnanVeerabathiran 5.1 Introduction 81 5.2 Mechanismofoncovirus 83 5.3 Typesandmechanismofoncoviruses 86 5.3.1 Epstein(cid:1)Barrvirus 86 5.3.2 HepatitisBvirus 87 5.3.3 Aviadenovirus 88 5.3.4 Humanimmunodeficiencyvirus 88 5.3.5 Humanpapillomavirus 89 5.3.6 Polyomavirus 90 5.3.7 Herpessimplexvirus 90 5.3.8 Parvovirus 91 5.3.9 Leporipoxvirus 92 5.3.10 Orthopoxvirus 93 5.4 Geneticsofvirus 94 5.5 Typesoftreatment 96 5.5.1 Immunotherapy 96 5.5.2 Chemotherapy 98 5.5.3 Targetedtherapy 98 5.5.4 Radiationtherapy 99 5.5.5 Hormonaltherapy 100 5.5.6 Surgery 100 5.6 Stemcelltransplanttherapy 101 5.6.1 Oncotherapy 101 viii Contents 5.7 Futureofoncotherapy 103 5.8 Conclusion 104 Acknowledgment 104 References 104 6. Multi-omics methods and tools in dissecting the oncovirus behavior in human host 109 SheikS.S.J.Ahmed,RamakrishnanVeerabathiran, MookkandiSudhan,HarshPanwarandPrabuPramasivam 6.1 Introduction 109 6.1.1 Definition 109 6.2 Typesofomics 111 6.2.1 Genomics 111 6.2.2 Transcriptomics 113 6.2.3 Proteomics 122 6.2.4 Metabolomics 127 6.2.5 Bioinformaticsresources 135 6.2.6 Databasesandtools 139 6.3 Conclusions 141 References 141 7. Role of viral human oncogenesis: recent developments in molecular approaches 147 ChandraLekhaSaravanan,MahalakshmiBaskar,SheikS.S.J.Ahmed andRamakrishnanVeerabathiran 7.1 Introduction 147 7.2 Prevalenceofoncovirus 148 7.3 Classificationofoncovirus 149 7.3.1 DNAtumorviruses 150 7.3.2 RNAtumorviruses 151 7.4 Moleculartoolsusedforoncovirusdetection 151 7.5 Vaccinesavailableforoncovirus 155 7.6 Statisticalanalysisofoncovirus 157 7.6.1 Epstein(cid:1)Barrvirus 157 7.6.2 HepatitisBvirus 158 7.6.3 Humanpapillomavirus 158 7.6.4 HepatitisCvirus 158 7.6.5 Kaposisarcoma-associatedherpesvirus 159 7.6.6 Humanimmunodeficiencyvirus 159 7.6.7 HumanT-celllymphotropicvirustype1 160 7.6.8 Merkelcellpolyomavirus 160 7.7 Oncovirusandcancerprogression 161 7.7.1 Humanpapillomavirusoncancerprogression 161 Contents ix 7.7.2 HepatitisBvirusoncancerprogression 162 7.7.3 HepatitisCvirusoncancerprogression 162 7.7.4 Humanpapillomavirusoncancerprogression 162 7.8 Oncolyticvirotherapy 163 7.9 Conclusion 165 Acknowledgment 165 References 165 8. Strategies for the development of hepatitis B virus vaccines 173 FadouaElBattioui,FatimaElMalkiandSaidBarrijal 8.1 Introduction 173 8.2 Virus-likeparticle-basedhepatitisBvaccines 173 8.3 Therapeuticvaccines 178 8.4 DNA-basedvaccines 179 8.5 mRNA-basedvaccines 180 8.6 Proteins/peptidesvaccines 181 8.7 Cell-basedvaccines 181 8.8 Nanovaccines 182 8.9 Efficacyoftherapeuticvaccines 183 8.10 Harmlessness 183 8.11 Immunizationcoverage 183 8.12 Conclusion 184 References 184 9. MYC oncogenes as potential anticancer targets 191 RadostinaAlexandrovaandCˇrtomirPodlipnik 9.1 Introduction 191 9.2 BiologicalroleofMYCgenes 192 9.3 MYCinnormaltissuesandcancer 193 9.4 MYCsignaltransductionpathway 195 9.5 StructureofMYC 197 9.6 TheMYC(cid:1)Maxinteraction 198 9.7 MYCasapotentialtargetforantitumortherapy 200 9.8 TargetingtheMYC(cid:1)Maxinteractionwithsmallmolecule inhibitors 201 9.9 IndirecttargetingoftheMYC 203 9.10 TargetingMYCtranscription 204 9.11 TargetingofMYCexpression 205 9.12 TargetingMYCstability 205 9.13 SyntheticlethalitywithMYC 206 9.14 G-quadruplexesandexpressionofc-MYC 207 9.15 Conclusionsandperspective 210 Acknowledgments 210 References 211

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