Nutrigenomics and Proteomics in Health and Disease: Food Factors and Gene Interactions PDF
Preview Nutrigenomics and Proteomics in Health and Disease: Food Factors and Gene Interactions
BLBS028-Mine January31,2009 13:26 Nutrigenomics and Proteomics in Health and Disease Food Factors and Gene Interactions Nutrigenomics and Proteomics in Health and Disease: Food Factors and Gene Interactions Edited by Yoshinori Mine, Kazuo Miyashita and Fereidoon Shahidi © 2009 Wiley-Blackwell ISBN: 978-0-813-80033-2 i BLBS028-Mine January31,2009 13:26 Nutrigenomics and Proteomics in Health and Disease Food Factors and Gene Interactions Editors Yoshinori Mine Kazuo Miyashita Fereidoon Shahidi Functional Food Science and Technology Series Fereidoon Shahidi SERIES EDITOR A John Wiley & Sons, Ltd., Publication iii BLBS028-Mine January31,2009 13:26 Editionfirstpublished2009 (cid:1)C 2009Wiley-Blackwell BlackwellPublishingwasacquiredbyJohnWiley&SonsinFebruary2007.Blackwell’spublishingprogramhas beenmergedwithWiley’sglobalScientific,Technical,andMedicalbusinesstoformWiley-Blackwell. 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Designationsusedbycompaniestodistinguishtheirproductsareoftenclaimedastrademarks.Allbrandnames andproductnamesusedinthisbookaretradenames,servicemarks,trademarksorregisteredtrademarksoftheir respectiveowners.Thepublisherisnotassociatedwithanyproductorvendormentionedinthisbook.This publicationisdesignedtoprovideaccurateandauthoritativeinformationinregardtothesubjectmattercovered. Itissoldontheunderstandingthatthepublisherisnotengagedinrenderingprofessionalservices.Ifprofessional adviceorotherexpertassistanceisrequired,theservicesofacompetentprofessionalshouldbesought. LibraryofCongressCataloguing-in-PublicationData Nutrigenomicsandproteomicsinhealthanddisease:foodfactorsandgeneinteractions/editedbyYoshinori Mine,KazuoMiyashita,FereidoonShahidi. p.;cm. Includesbibliographicalreferencesandindex. ISBN-13:978-0-8138-0033-2(alk.paper) ISBN-10:0-8138-0033-1(alk.paper) 1.Nutrition–Geneticaspects. 2.Proteomics. I.Mine,Yoshinori. II.Miyashita,Kazuo. III.Shahidi, Fereidoon,1951- [DNLM:1.Nutrigenomics. 2.NutritionPhysiology–genetics. 3.DietTherapy. 4.Obesity–genetics. 5.Proteomics. 6.Receptors,CytoplasmicandNuclear–genetics.QU145N970592009] QP144.G45N8852009 613.2–dc22 2008041831 AcatalogrecordforthisbookisavailablefromtheU.S.LibraryofCongress. Setin9.5/11ptTimesNewRomanbyAptara(cid:1)R Inc.,NewDelhi,India PrintedandBoundintheUnitedStates. 1 2009 iv BLBS028-Mine January31,2009 13:26 Contents Preface vii Contributors ix SectionI Introduction 1. NutrigenomicsandProteomicsinHealthandDisease:AnOverview 3 YoshinoriMine,KazuoMiyashita,andFereidoonShahidi 2. OmicsinNutritionandHealthResearch 11 MichaelAffolter,Fre´de´ricRaymond,andMartinKussmann SectionII GenomicsandProteomicsinHealthandDiseases 3. TowardPersonalizedNutritionandMedicine:PromisesandChallenges 33 BaitangNingandJimKaput 4. ObesityandNuclearReceptors:EffectiveGenomicStrategiesinFunctionalFoods 47 TeruoKawada,TsuyoshiGoto,ShizukaHirai,RinaYu,andNobuyukiTakahashi 5. InflammatoryGenesInvolvedinObesity-InducedInflammatoryResponsesandPathologies 59 RinaYu 6. GenomicsandProteomicsinAllergy 67 IcyD’SilvaandYoshinoriMine SectionIII FoodFactors–GeneInteractions 7. BeneficialEffectsofConjugatedLinoleicAcid 85 KazunoriKobaandTeruyoshiYanagita 8. RegulationofGeneTranscriptionbyFattyAcids 97 Jean-PaulPe´gorier 9. NonnutrientFunctionalityofAminoAcids 115 YoshinoriMineandConnieJ.Kim 10. FunctionalBioactiveProteinsandPeptidesinNutrigenomics 129 DeniseYoungandYoshinoriMine 11. AntiobesityEffectofAllenicCarotenoid,Fucoxanthin 145 KazuoMiyashitaandMasashiHosokawa 12. ControlofSystemicInflammationandChronicDiseases—TheUseofTurmeric andCurcuminoids 161 StigBengmark v BLBS028-Mine January31,2009 13:26 vi Contents 13. AlterationinGeneExpressionandProteomicProfilesbySoyIsoflavone 181 FazlulH.SarkarandYiweiLi 14. GreenTeaPolyphenol-ModulatedGenomeFunctionsforProtectiveHealthBenefits 201 MolayK.Roy,MahendraP.Kapoor,andLekhR.Juneja 15. OatAvenanthramides:ANovelAntioxidant 239 LiLiJi,RyanKoenig,andMitchellL.Wise 16. Cancer-PreventiveEffectsandMolecularActionsofAnthocyanins 251 De-XingHou 17. FoodComponentsActivatingCapsaicinReceptorTRPV1 263 TatsuoWatanabe,YusakuIwasaki,AkihitoMorita,andKenjiKobata 18. NewTherapeuticEffectsofAnthocyanins:AntiobesityEffect,AntidiabetesEffect, andVisionImprovement 273 TakanoriTsudaandHitoshiMatsumoto 19. LicoriceFlavonoids 291 ShinichiHonda,YujiTominaga,andShinichiYokota 20. Isoprenols 301 TsuyoshiGoto,NobuyukiTakahashi,ShizukaHirai,andTeruoKawada 21. Anti-inflammatoryandAnticarcinogenesisPotentialsofCitrusCoumarins andPolymethylatedFlavonoids 311 AkiraMurakamiandHajimeOhigashi 22. Probiotics:FoodforThought 325 KingsleyC.AnukamandGregorReid SectionIV AdvancedAnalyticalTechniquesforNutrigenomicsandProteomics 23. Microarrays:APowerfulToolforStudyingtheFunctionsofFoodandItsNutrients 339 HiroshiMano,JunShimizu,andMasahiroWada 24. ChallengesandCurrentSolutionsinProteomicSamplePreparations 351 FengTao 25. ComputationalMethodsinCancerGeneNetworking 367 EdwinWang 26. Peptidomics 375 YoshinoriMine Index 387 BLBS028-Mine January31,2009 13:26 Preface Recentadvancesintheareasoffunctionalfoods,nu- thatfacilitateundertakingofchallengesthoughtim- traceuticals, and natural health products have been possibleonlyadecadeago. culminatedbythoseinmodernmolecularnutrition. Thisbookprovidesastate-of-the-artcompilation Thus, the advent of nutrigenomic, proteomic, and ofthemostrecentdevelopmentsintheexcitingfield metabolomichasresultedinaleaptowardindividu- ofnutrigenomicsandproteomics.Itisofspecialin- alizednutrition,hopefullyinthenearfuture.Inthis terest to nutritionists, food scientists, biochemists, connection, the present book on nutrigenomic and pharmacologistsandbiologists,amongothers.This proteomicisexpectedtoprovidelinksandinforma- bookservesasareferencecompendiumforscientists tionrelevanttohealthpromotionanddiseaseriskre- inacademia,industry,andgovernmentlaboratories. duction.Manyofthebioactivecomponentspresent Itmayalsobeusedasatextforseniorundergradu- infoodsorproduceduponingestionoruponprocess- ateandgraduatestudentsinmultidisciplinaryareas ingunderconditionsmincingdigestionarefoundto listed.Weareindebtedtoworld-renownedscientists improve health status related to cardiovascular dis- fortheirexcellentcontributionsthatmadethepubli- eases,certaintypesofcancer,inflammatorydisorders cationofthisbookpossible. andimmuneresponse,diabetes,gastrointestinaltract conditionsaswellasvariouspsychologicalproblems, YoshinoriMine andthemetabolicsyndrome.Thetechniquesusedto KazuoMiyashita study such benefits have improved over the recent FereidoonShahidi years and unique tools have now become available vii BLBS028-Mine January31,2009 13:26 Contributors MichaelAffolter ShizukaHirai FunctionalGenomicsGroup LaboratoryofMolecularFunctionofFood DepartmentofBioAnalyticalSciences DivisionofFoodScienceandBiotechnology Nestle´ResearchCenter GraduateSchoolofAgriculture Vers-chez-les-Blanc KyotoUniversity CH-1000Lausanne26 UjiKyoto611-0011,Japan Switzerland KingsleyC.Anukam ShinichiHonda CanadianResearch&DevelopmentCentre FrontierBiochemicalandMedicalResearch forProbiotics Laboratories,KanekaCorporation, LawsonHealthResearchInstitute,London,Ontario, 1-8Miyamae-machi,Takasago-cho, Canada Takasago-shi,Hyogo676-8688,Japan StigBengmark MemberAcademiaEuropeae MasashiHosokawa EmeritusprofessorLundUniversity,Lund,Sweden FacultyofFisheriesSciences HonoraryVisitingProfessortoDepartmentof HokkaidoUniversity Hepatology,UniversityCollegeLondon(UCL), Hakodate041-8611,Japan LondonUniversity, 69-75CheniesMews,London,WC1E6HX, UnitedKingdom De-XingHou DepartmentofBiochemicalScience IcyD’Silva andTechnology DepartmentofFoodScience FacultyofAgriculture UniversityofGuelph KagoshimaUniversity,Korimoto1-21-24 GuelphOntarioN1G2W1,Canada KagoshimaCity,890-0065Japan TsuyoshiGoto LaboratoryofMolecularFunctionofFood YusakuIwasaki DivisionofFoodScienceandBiotechnology GraduateSchoolofNutritionalandEnvironmental GraduateSchoolofAgriculture,Kyoto SciencesandGlobalCOEProgram University UniversityofShizuoka UjiKyoto611-0011,Japan Shizuoka422-8526,Japan ix BLBS028-Mine January31,2009 13:26 x Contributors LiLiJi MartinKussmann TheBiodynamicsLaboratoryandthe GroupLeaderFunctionalGenomics Interdisciplinary DepartmentofBioAnalyticalSciences GraduateProgramofNutritionalScience Nestle´ResearchCenter UniversityofWisconsin-Madison Vers-chez-les-Blanc WI53706,USA CH-1000Lausanne26 Switzerland LekhR.Juneja TaiyoKagakuCo.Ltd YiweiLi Research&Development, DepartmentofPathology 1-3Takaramachi,Yokkaichi KarmanosCancerInstitute Mie510-0844,Japan WayneStateUniversitySchoolofMedicine Detroit,MI,USA MahendraP.Kapoor TaiyoKagakuCo.Ltd Research&Development, HiroshiMano 1-3Takaramachi,Yokkaichi FacultyofPharmaceuticalScience Mie510-0844,Japan DepartmentofClinicalDieteticsandHuman Nutrition JimKaput JosaiUniversity DivisionofPersonalizedNutritionandMedicine 1-1Keyakidai,Sakado FDA/NationalCenterforToxicologicalResearch Saitama350-0295,Japan 3900NCTRRoad Jefferson,AR72079 HitoshiMatsumoto TeruoKawada Food&HealthR&DLaboratories LaboratoryofMolecularFunctionofFood MeijiSeikaKaisha,Ltd. DivisionofFoodScienceandBiotechnology 5-3-1ChiyodaSakado GraduateSchoolofAgriculture Saitama350-0289,Japan KyotoUniversity UjiKyoto611-0011,Japan YoshinoriMine DepartmentofFoodScience ConnieJ.Kim UniversityofGuelph DepartmentofFoodScience 50StoneRoadEast UniversityofGuelph Guelph,ONN1G2W1,Canada 50StoneRoadEast Guelph,Ontario N1G2W1,Canada KazuoMiyashita FacultyofFisheriesSciences KazunoriKoba HokkaidoUniversity DepartmentofNutritionalScience Hakodate041-8611,Japan UniversityofNagasaki,Siebold Nagasaki,851-2195,Japan AkihitoMorita GraduateSchoolofNutritionalandEnvironmental KenjiKobata SciencesandGlobalCOEProgram GraduateSchoolofNutritionalandEnvironmental UniversityofShizuoka SciencesandGlobalCOEProgram Shizuoka422-8526,Japan UniversityofShizuoka Shizuoka422-8526,Japan AkiraMurakami RyanKoenig DivisionofFoodScienceandBiotechnology TheBiodynamicsLaboratoryand GraduateSchoolofAgriculture UniversityofWisconsin KyotoUniversity Madison,WI53706,USA Kyoto606-8502,Japan BLBS028-Mine January31,2009 13:26 Contributors xi BaitangNing JunShimizu DivisionofPersonalizedNutritionandMedicine FacultyofPharmaceuticalScience FDA/NationalCenterforToxicologicalResearch DepartmentofClinicalDieteticsandHuman 3900NCTRRoad Nutrition Jefferson,AR72079 JosaiUniversity 1-1Keyakidai,Sakado HajimeOhigashi Saitama350-0295,Japan FacultyofBiotechnology,Fukui PrefecturalUniversity NobuyukiTakahashi 4-1-1,Konejojima,Matsuoka LaboratoryofMolecularFunctionofFood Eiheiji-Town,Fukui,910-1195,Japan DivisionofFoodScienceandBiotechnology GraduateSchoolofAgriculture,KyotoUniversity Jean-PaulPe´gorier UjiKyoto611-0011,Japan De´partementd’Endocrinologie,Me´tabolisme etCancer FengTao InstitutCochin,IFRAlfredJOST PressureBioSciences,Inc. INSERMU567,CNRSUMR8104,Universite´ 14NorfolkAvenue Rene´Descartes SouthEaston,MA02375 24rueduFaubourgSaintJacques YujiTominaga 75014Paris,France FrontierBiochemicalandMedicalResearch Laboratories Fre´de´ricRaymond KanekaCorporation FunctionalGenomicsGroup 1-8Miyamae-machi,Takasago-cho DepartmentofBioAnalyticalSciences Takasago-shi,Hyogo676-8688,Japan Nestle´ResearchCenter Vers-chez-les-Blanc TakanoriTsuda CH-1000Lausanne26 CollegeofBioscienceandBiotechnology Switzerland ChubuUniversity,1200Matsumoto-cho,Kasugai Aichi487-8501,Japan GregorReid CanadianResearch&DevelopmentCentrefor MasahiroWada Probiotics FacultyofPharmaceuticalScience LawsonHealthResearchInstitute DepartmentofClinicalDieteticsandHuman 268GrosvenorStreet,London,Ontario, Nutrition Canada,N6A4V2 JosaiUniversity 1-1Keyakidai,Sakado Saitama350-0295,Japan MolayK.Roy TaiyoKagakuCo.Ltd EdwinWang Research&Development, BiotechnologyResearchInstitute 1-3Takaramachi,Yokkaichi NationalResearchCouncilofCanada Mie510-0844,Japan 6100RoyalmountAvenue Montreal,Quebec,Canada FazlulH.Sarkar and DepartmentofPathology CenterforBioinformatics KarmanosCancerInstitute McGillUniversity WayneStateUniversitySchoolofMedicine Montreal,Quebec,Canada Detroit,MI,USA TatsuoWatanabe FereidoonShahidi GraduateSchoolofNutritionalandEnvironmental DepartmentofBiochemistry SciencesandGlobalCOEProgram MemorialUniversityofNewfoundland UniversityofShizuoka3 St.John’s,NLA1B3X9,Canada Shizuoka422-8526,Japan BLBS028-Mine January31,2009 13:26 xii Contributors MitchellL.Wise DeniseYoung UnitedStatesDepartmentofAgricultureCerealCrop DepartmentofFoodScience ResearchLaboratory UniversityofGuelph Madison,WI53706,USA Guelph,OntarioN1G2W1,Canada TeruyoshiYanagita RinaYu DepartmentofAppliedBiochemistryandFood LaboratoryofClinicalNutrition&Immunology Science DepartmentofFoodScienceandNutrition SagaUniversity UniversityofUlsan Saga,840-8502,Japan Ulsan680-749,SouthKorea ShinichiYokota FrontierBiochemicalandMedicalResearch Laboratories KanekaCorporation 1-8Miyamae-machi,Takasago-cho Takasago-shi,Hyogo676-8688,Japan
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