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Access to the eBook is limited to the first individual who redeems the PIN, located on the inside cover of this book, at studentconsult.inkling.com and may not be transferred to another party by resale, lending or other means. M E D I C A L G E N E T I C S This page intentionally left blank M E D I C A L G E N E T I C S FIFTH EDITION Lynn B. Jorde, PhD Professor H.A. and Edna Benning Presidential Chair Department of Human Genetics University of Utah Health Sciences Center Salt Lake City, Utah John C. Carey, MD, MPH Professor Division of Medical Genetics Department of Pediatrics University of Utah Health Sciences Center Salt Lake City, Utah Michael J. Bamshad, MD Professor Division of Genetic Medicine Department of Pediatrics University of Washington School of Medicine Seattle Children’s Hospital Seattle, Washington 1600 John F. Kennedy Blvd. Ste 1800 Philadelphia, PA 19103-2899 MEDICAL GENETICS, FIFTH EDITION ISBN: 978-0-323-18835-7 Copyright © 2016 by Elsevier, Inc. All rights reserved. Copyright © 2010, 2006, 2003, 2000, 1995 by Mosby, Inc., an affiliate of Elsevier Inc. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the publisher. Details on how to seek permission, further information about the Publisher’s permissions policies and our arrangements with organizations such as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our website: www.elsevier.com/permissions. This book and the individual contributions contained in it are protected under copyright by the Publisher (other than as may be noted herein). Notices Knowledge and best practice in this field are constantly changing. As new research and experience broaden our understanding, changes in research methods, professional practices, or medical treatment may become necessary. Practitioners and researchers must always rely on their own experience and knowledge in evaluating and using any information, methods, compounds, or experiments described herein. In using such information or methods they should be mindful of their own safety and the safety of others, including parties for whom they have a professional responsibility. With respect to any drug or pharmaceutical products identified, readers are advised to check the most current information provided (i) on procedures featured or (ii) by the manufacturer of each product to be administered, to verify the recommended dose or formula, the method and duration of administration, and contraindications. It is the responsibility of practitioners, relying on their own experience and knowledge of their patients, to make diagnoses, to determine dosages and the best treatment for each individual patient, and to take all appropriate safety precautions. To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors assume any liability for any injury and/or damage to persons or property as a matter of products liability, negligence or otherwise, or from any use or operation of any methods, products, instructions, or ideas contained in the material herein. Library of Congress Cataloging-in-Publication Data Jorde, Lynn B., author. Medical genetics / Lynn B. Jorde, John C. Carey, Michael J. Bamshad.—Fifth edition. p. ; cm. Includes bibliographical references and index. ISBN 978-0-323-18835-7 (pbk. : alk. paper) I. Carey, John C., 1946- , author. II. Bamshad, Michael J., author. III. Title. [DNLM: 1. Genetic Diseases, Inborn—genetics. 2. Genetics, Medical—methods. 3. Genetic Counseling. 4. Genetic Predisposition to Disease. 5. Genetic Techniques. QZ 50] RB155 616'.042—dc23 2015019218 Content Strategist: Meghan Ziegler Content Development Manager: Lucia Gunzel Senior Content Development Specialist: Rae Robertson Publishing Services Manager: Catherine Jackson Project Manager: Rhoda Howell Design Direction: Ashley Miner Printed in Canada Last digit is the print number: 9 8 7 6 5 4 3 2 1 To Our Families Debra, Eileen, and Alton Jorde Leslie, Patrick, and Andrew Carey Jerry and Joanne Bamshad This page intentionally left blank F O R E WO R D J.B.S. Haldane titled an anthology of some of his more dys- 20th centuries: What is the relationship between evolution peptic writings “Everything Has a History,” and this is clearly and development? applicable to the field of medical genetics. More than 200 In 1945 the University of Utah established the Laboratory years ago, scientists such as Buffon, Lamarck, Goethe, and for the Study of Hereditary and Metabolic Disorders (later Kielmeyer reflected on how the developmental history of called the Laboratory of Human Genetics). Here, an out- each organism relates to the history of life on Earth. Based standing group of scientists performed pioneering studies on on these ideas, the discipline of biology was born in 18th clefts of lips and palate, muscular dystrophy, albinism, deaf- century Europe, enjoyed adolescence as morphology and ness, hereditary polyposis of the colon (Gardner syndrome), comparative anatomy in the 19th century, and reached and familial breast cancer. These predecessors would be enor- adulthood in the 20th century as the field of genetics. mously proud of their current peers at the University of Utah, However, the late 19th century definition of genetics (hered- whose successes have advanced knowledge in every aspect of ity) as the science of variation (and its causes) is still valid. the field of genetics. Thus, human genetics is the science of human variation, In their attempts to synthesize the story of genetics and its medical genetics the science of abnormal human variation, applications to human variability, health and disease, devel- and clinical genetics that branch of medicine that cares for opment, and cancer, the authors of this text have succeeded individuals and families with abnormal variation of struc- admirably. This concise, well-written, well-illustrated, and ture and function. carefully edited and indexed book is highly recommended to In the late 19th and early 20th centuries, the unity of undergraduate students, new graduate students, medical stu- morphology-based science was gradually replaced by a plu- dents, genetic counseling students, nursing students, and stu- ralistic view of biology that splintered the field into many dents in the allied health sciences. Importantly, it is also a different, and often rivalrous, disciplines. However, thanks wonderful text for practicing physicians (primary care pro- to the application of novel molecular biological methods viders and specialists) who want an authoritative introduc- to the analysis of development and to the understanding tion to the basis and principles of modern genetics as applied of the materials of heredity (i.e., genes), the various branches to human health and development. This text, written by dis- of biology are being reunited. This new discipline, termed tinguished and internationally respected colleagues and “molecular morphology,” may be defined as the study of the friends who love to teach, is a joy to read in its expression form, formation, transformation, and malformation of living of enthusiasm and of wonder, which Aristotle said was the organisms. Indeed, ignorant as they may be of the traditional beginning of all knowledge. methods of historiography, geneticists have developed their Einstein once said, “The most incomprehensible thing own brilliant and highly effective methods. Consequently, about the world is that it is comprehensible.” When I began they have achieved a perspective remarkably longer and much to work in the field of medical genetics, the gene was widely better documented than that of historians. This nearly 4- viewed as incomprehensible. Indeed, some scientists, such as billion-year perspective unites living organisms into a single Goldschmidt, cast doubt on the very existence of the gene, web of life related to one another in unbroken descent to a although the great American biologist E.B. Wilson had pre- common ancestor. This makes the phylogenetic (i.e., the dicted its chemical nature more than 100 years previously. In genetic relationships of different species to one another) and this text, genes and their function in health and disease are the ontogenetic (i.e., the genetic basis for the development of made comprehensible in a manner that should have wide individual organisms) perspectives of development not only appeal to all. complementary but inseparable. Thus, it is now possible to John Opitz, MD effectively explore a key question of biology of the 19th and Salt Lake City, Utah vii P R E FAC E Medical genetics is a rapidly progressing field. No textbook Several pedagogical aids are incorporated in this book: can remain factually current for long, so we have attempted • Clinical Commentary boxes present detailed coverage of to emphasize the central principles of genetics and their clini- the most important genetic diseases and provide examples cal application. In particular, this textbook integrates recent of modern clinical management. developments in molecular genetics and genomics with clini- • Mini-summaries, highlighted in gold, are placed on nearly cal practice. every page to help the reader understand and summarize This new edition maintains the format and presentation important concepts. that were well received in four previous editions. Basic prin- • Study questions, provided at the end of each chapter, assist ciples of molecular biology are introduced early in the book the reader in review and comprehension. so that they can be discussed and applied in subsequent chap- • A detailed glossary is included at the end of the book. ters. The chapters on autosomal and X-linked disorders • Key terms are emphasized in boldface. include updated discussions of topics such as genomic • Important up-to-date suggested readings are listed at the imprinting, anticipation, and expanded trinucleotide repeats. end of each chapter. The chapter on cytogenetics highlights important advances In addition, the fifth edition retains these important in this area, including array comparative genomic hybridiza- features: tion and newly described microdeletion syndromes. Whole- • All chapters have been thoroughly updated, with special genome DNA sequencing and disease-gene identification, attention given to rapidly changing topics such as high- which constitute a central focus of modern medical genetics, throughput DNA sequencing, genetic diagnosis, gene are treated at length. Chapters are included on the rapidly therapy, cancer genetics, and the genetics of other common developing fields of immunogenetics and cancer genetics. diseases. Considerable discussion is devoted to the genetics of common • To facilitate the creation of illustrations for teaching pur- adult diseases, such as heart disease, diabetes, stroke, and poses, all images on the website (including line drawings hypertension. The book concludes with chapters on genetic from the textbook) can be downloaded. diagnosis (again emphasizing current approaches such as • An expanded comprehensive index includes all text cita- whole-exome and whole-genome sequencing), gene therapy, tions of all diseases. personalized medicine, and clinical genetics and genetic This textbook evolved from courses we teach for medical counseling. students, nursing students, genetic counseling students, and As in previous editions, a website is available to provide graduate and undergraduate students in human genetics. access to continually changing information in medical genet- These students are the primary audience for this book, but it ics (http://evolve.elsevier.com/Jorde/). The website includes should also be useful for house staff, physicians, and other downloadable versions of all of the figures in the textbook, health-care professionals who wish to become more familiar hyperlinks to other relevant sites, and a battery of test ques- with medical genetics. tions and answers. viii