Author Index to Volumes 108-112 339 Adler, Frederick R., 111:89 Fu, Yun-Xin, and Wen-Hsiung Li, 108:203; Agur, Zvia, See Cojocaru, Lutzy 109:201 Alvarado, Francisco, See Vasseur, Monique Arditi, Roger, and Bernard Dacorogna, Godfrey, Keith R., See Chappell, 110:253 Michael J. Goldstein, Byron, See Wofsy, Carla Balchen, Jens Glad, See Olsen, Odd Arild Gomulkiewicz, Richard, 110:133 Ball, Frank G., and John A. Rice, 112:187 Greensite, Fred, 111:131 Baltzis, Basil, See Kung, Cheng-Ming Gulrajani, Ramesh M., See lakovidis, Ilias Barakat, Richard, See Spencer, Hamish G. Gupta, S. C., O. P. Srivastava, and Barr, Lloyd, See Lazalde, Carlos A. Mahendra Singh, 111:159 Becker, Nikolaus, and Werner Rittgen, 108:57 Hahnfeldt, Philip J., See Sachs, Rainer K. Bell, Jonathan, and Mark Holmes, 110:139 Hallam, Thomas G., See Silva, Jacques Ben-Haim, Shlomo, See Fruchter, Gila A. L. Binding, Paul, See Herzog, Walter Herzog, Walter, and Paul Binding, 111:217 Bischi, Gain Italo, 109:151 Hlatky, Lynn R., See Sachs, Rainer K. Bobylev, Alexander V., See Dolgosheina, Holmes, Mark, See Bell, Jonathan Elena B. Holmes, Raquelle, See Mickens, Ronald E. Brand, Richard J., See Kenley, Susan S. Hsieh, J. J., 108:299 (erratum) Hutson, Vivian, and Klaus Schmitt, 111:1 Chaplain, M. A. J., and B. D. Sleeman, 111:169 lakovidis, Ilias, and Ramesh M. Gulrajani, Chappell, Michael J., and Keith R. God- 112:55 frey, 108:241 Chen, Pei-Li, See Sachs, Rainer K. Kallianpur, Gopinath, 112:207 Chaing, Chin Long, See Kenley, Susan S. Kaplan, Edward H., 108:141; 110:131 (note) Cojocaru, Lutzy, and Zvia Agur, 109:85 Karulin, Alex Yu., See Dolgosheina, Cressman, R., 108:179 Elena, B. Kendal, Wayne S., 108:81 Czihak, Gerhard, and Johann Linhart, Kenley, Susan S., Chin Long Chiang, and 110:175 Richard J. Brand, 111:249 Dacorogna, Bernard, See Arditi, Roger Kevrekidis, I. G., See Pavlou, S. Day, William H. E., and F. R. McMorris, Kot, Mark, See Neubert, Michael G. 111:231 Kubota, K., and E. H. Twizell, 108:157 Distefano, Joseph J., III, See Feng, Dagan Kung, Cheng-Ming, and Basil Baltzis, Doi, Shinji, See Sato, Shunsuke 111:295 Dolgosheina, Elena B., Alex Yu. Karulin, and Alexander V. Bobylev, 109:1 Lam, Chan F., See Torsella, Joni A. Duraiswamy, S., See Mehata, K. M. Lange, Kenneth, and Francisco J. Oyarzun, 111:261 Engen, Steinar, 108:279 Lauffenburger, Douglas A., See Ford, Roseanne M. Feng, Dagan, and Joseph J. Distefano III, Lazalde, Carlos A., and Lloyd Barr, 112:1, 110:27 31 Fisher, M. E., See Martin, R. B. Le Cam, L., 112:261 Ford, Roseanne M., and Douglas A. Levine, Michael W., 112:225 Lauffenburger, 109:127 Li, Jia, 110:17 Frangne, Regine, See Vasseur, Monique Li, Wen-Hsiung, See Fu, Yun-Xin Freedman, H. I., and Shigui Ruan, 111:73 Linhart, Johann, See Czihak, Gerhard Fruchter, Gila, and Shlomo Ben-Haim, Lundstrom, Ron, Simon Tavaré, and R. H. 110:103 Ward, 112:319 340 AUTHOR INDEX McGilchrist, Clyde A., See Zhaorang, Jiao Silva, Jacques A. L., and Thomas G. McMorris, F. R., See Day, William, H. E. Hallam, 110:67 Marschner, Ian C., 109:39 Singh, Mahendra, See Gupta, S. C. Martin, R. B., M. E. Fisher, R. F. Minchin, Sleeman, B. D., See Chaplain, M. A. J. and K. L. Teo, 110:201 Spencer, Hamish G., and Richard Barakat, Matawie, Kenan M., See Zhaorong, Jiao 108:127 Matsuda, Hiroyuki, See Takeuchi, Srivastava, O. P., See Gupta, S. C. Yasuhiro Stefanou, Spiro E., 110:137 May, Robert M., See Watts, Charlotte H. Swan, George W., 108:75 Mehata, K. M., and S. Duraiswamy, 109:177 Melle, Guy van, See Vasseur, Monique Takada, Takenori, and Hisao Nakajima, Mickens, Ronald E., and Holmes, Raquelle, 112:155 111:155 Takeuchi, Yasuhiro, Yorimasa Oshime, and Minchin, R. F., See Martin, R. B. Hiroyuki Matsuda, 108:105 Montardy-Pausader, J., 108:219 Tavaré, Simon, See Lundstrom, Ron Teo, K. L., See Martin, R. B. Nakajima, Hisao, See Takada, Takenori Thieme, Horst R., 111:99 Nanthakumar, A., See Razzaghi, Mehdi Torsella, Joni A., Kenneth M. Pruitt, and Neubert, Michael G., and Mark Kot, 110:45 Chan F. Lam, 110:191 Tsuji, Leonard J. S., 109:11 Olsen, Odd Arild, and Jens Glad Balchen, Turyn, L., 110:125 (note) 112:81 Tuzinkevich, A. V., 109:99 Oshime, Yorimasa, See Takeuchi, Ya- Twizell, E. H., See Kubota, K. suhiro Oyarzun, Francisco J., See Lange, Kenneth Ulanowicz, Robert E., and Wilfried F. Wolff, 112:185 (note) Pandey, A., See Yadava, R. C. Pahl-Wostl, C., 112:177 (note) Vasseur, Monique, Guy van Melle, Regine Pavlou, S., and I. G. Kevrekidis, 108:1 Frangne, and Francisco Alvarado, 110:1 Pruitt, Kenneth M., See Torsella, Joni A. Voit, Eberhard O., 109:19 Razzaghi, Mehdi, and A. Nanthakumar, 109:69 Ward, R. H., See Lundstrom, Ron Watts, Charlotte H., and Robert M. May, Rice, John A., See Ball, Frank G. Rittgen, Werner, See Becker, Nikolaus 108:89 Ruan, Shigui, See Freedman, H. I. Wofsy, Carla, and Byron Goldstein, 112:115 Wolff, Wilfried F., See Ulanowicz, Sachs, Rainer K., Pei-Li Chen, Philip J. Robert E. Hahnfeldt, and Lynn R. Hlatky, 112:271 Sankoff, David, 111:279 Yadava, R. C., A. Pandey, and N. C. Sato, Shunsuke, and Shinji Doi, 112:243 Saxena, 110:181 Saxena, N. C., See Yadava, R. C. Yang, Grace L., 112:305 Schmitt, Klaus, See Hutson, Vivian Sharan, Maithili, and S. Selvakumar, Zhaorang, Jiao, Kenan M. Matawie, and 108:253 Clyde A. McGilchrist, 110:119 (note) Reee oeae, Subject Index to Volumes 108-112 341 Age structure, continuous, maximum sus- Central core model of renal medulla, prop- tainable yield of populations with, erties of the solutions to certain equa- 110:253 tions are arising in, 111:155 Agglutination process, a kinetic model of, Chaos 109:1 bifurcations and, in a time-discrete inte- Aggregation, possible effects on quantita- gral model of population dynamics, tive interpretation of flow patterns in 109:99 ecological networks, 112:177 propagation of, stochastic differential Anemia phyllitidis (L.) Sw, computer simu- equation models for spatially dis- lation of bidimensional growth of the tributed neurons and, 112:207 gametophyte of, 108:219 Chemical kinetics, effects on oxygen deliv- Antagonistic muscular activity, predictions ery to tissue, 108:253 of, using nonlinear optimization, 217 Chemostat, periodically operated, micro- Averaging, effects on basic reproduction bial predation in, 108:1 ratio, 111:89 Chemotherapy low intensity combination, for tumors Bacterial chemotaxis, a simple expression containing drug-resistant cells, 110:221 for quantifying, using capillary assay optimal control of tumor size to maxi- data, 109:127 mize survival time when cells are resis- Batch reactor, nonlinear, see under Model Bifurcations and chaos in a time-discrete tant to, 110:201 integral model of population dynam- Compensation and stability in nonlinear ics, 109:99 matrix models, 110:67 Biological systems, permanence and dy- Competitors, pure and simple microbial, namics of, 111:1 growth in a moving distributed region, Biological transduction phenomena, a 111:295 method for the analysis of, 110:191 Computer modeling of pole formation in Birth intervals, closed and open, estimation cell division, 110:175 of parity progression from truncated Computer simulation of bidimensional distribution of, 110:181 growth of the gametophyte of Anemia BOOK REVIEW: Gomulkiewicz, Richard, phyllitidis (L.) Sw, 108:217 Statistical Genetics (Prem Narain), Consensus sequences, interpreting, based 110:133 on plurality rule, 111:231 BOOK REVIEW: Stefanou, Spiro E., Control of tumor size, See Tumor size Mathematical Bioeconomics: The Op- timal Management of Renewable Re- Decomposition, efficient optimal, of a se- sources (Colin W. Clark), 110:137 quence into disjoint regions, each Branching process with emigration—a ge- matched to some template in an in- netic model, 111:159 ventory, 111:279 BVP neuron model, response characteris- Diffusion of an inhibitor in a spherical tics of, to periodic pulse inputs, 112:243 tumor, 108:75 Discordances, variance components for, Cancer mortality data, fitting with cumula- 110:119 tive damage models, 108:57 Diseases in growing populations, poten- Capillary assay data, a simple expression for quantifying bacterial chemotaxis tially fatal, epidemic and demographic using, 109:127 interaction in the spread of, 111:99 Cardiovascular systems, dynamic properties DNA damage caused by ionizing radiation, 112:271 of, 110:103 Cell division, computer modeling of pole Droop equations, the attractiveness of, formation in, 110:175 111:261 Cell survival probability under ionizing ra- Drug absorption, percutaneous, nonlinear diation, 112:305 numerical model of, 108:157 342 SUBJECT INDEX Drugs, cell-cycle-phase-specific, a theoreti- Human mitochondrial genome, modeling cal analysis of interval drug dosing for, the evolution of, 112:319 109:85 Dynamic properties of cardiovascular sys- Immigration-birth-death-emigration pro- tems, 110:103 cess, parity-dependent, 109:177 Dynamics of biological systems, perma- Inhibitor, diffusion of, in a spherical tumor, nence and, 111:1 108:75 Interval drug dosing for cell-cycle-phase- Ecological networks, flow patterns in, specific drugs, a theoretical analysis 112:177 of, 109:85 Electrocardiography, a new method for Intestinal brush border sucrase, application regularization of the inverse problem of four-proton-families model for pH- of, 111:131 dependent enzyme activation to, 110:1 Epidemic, growth of, effect of preferential Inverse epicardial potential solution, 112:55 mixing on, 109:39 Ion channels, stochastic models for, 112:187 Evolutionarily stable sets in symmetric ex- Ionizing radiation tensive two-person games, 108:179 cell survival probability under, 112:305 Experiment design algorithms, decomposi- DNA damage caused by, 112:271 tion-based qualitative, for a class of compartmental models, 110:27 Kinetic model of the agglutination process, 109:1 Firing rate of retinal ganglion cells, model- ing the variability of, 112:225 Lefkovitch matrix model, density-depen- Fish physiology, structured modeling of, dent, analysis of life history evolution 112:81 in terms of, 112:155 Flow patterns in ecological networks, quan- Lehmann alternatives, on using with non- titative interpretation of, 112:177 responders, 109:69 Four-state models and regulation of con- Lesion induction and repair in yeast, traction of smooth muscle stochastic models of, 112:261 physical considerations, stability, and so- Life history evolution, an analysis in terms lutions, 112:1 of Lefkovitch matrix model, 112:155 properties of solutions and identifica- tion, 112:31 Life tables, construction of expanded con- tinuous (erratum), 108:299 Linear invariants in phylogenetic inference Ae9ia trSm t t Growth of the gametophyte of Anemia phyllitidis (L.) Sw, construction of, 109:201 bidimensional, computer simulation of, necessary and sufficient conditions for 108:219 the existence of, 108:203 Growth-limited cultures, capillary assay data and analysis of enhanced chemo- Mathematical model for the growth and tactic responses from, 109:127 classification of a solid tumor: a new Growth of pure and simple microbial com- approach via nonlinear elasticity the- petitors in a moving distributed ory using strain-energy functions, medium, 111:295 111:169 Measure of spacing in one dimension, HIV/AIDS 109:11 influence of concurrent partnerships on Metastatic progression, role of multiple so- dynamics of, 108:89 matic point mutations in, 108:81 asymptotic worst-case mixing in simple Microbial competitors, pure and simple, demographic models of, 108:141 growth in a moving distributed Hopf bifurcation in three-species food medium, 111:295 chain models with group defense, Microbial predation in a periodically oper- 111:73 ated chemostat: global study of inter- SUBJECT INDEX 343 action between natural and externally three-competitor, persistence and peri- imposed frequencies, 108:1 odic orbits in, 108:105 Mixing, preferential, effect on growth of an three-species food chain, with group de- epidemic, 109:39 fense, Hopf bifurcation in, 111:73 Modeling time-discrete integral, of population dy- the evolution of the human mitochon- namics, bifurcations and chaos in, drial genome, 112:319 109:99 structured, of fish physiology, 112:81 worst-case endemic mixing, R, bounds the variability of firing rate of retinal for, 110:131 ganglion cells, 112:225 Mortality data, cancer, fitting with cumula- Models tive damage models, 108:57 of the agglutination process, kinetic, Mutations, multiple somatic point, role in 109:1 metastatic progression, 108:81 compartmental, decomposition-based qualitative experiment design algo- Nature is not uniform, 112:185 rithms for a class of, 110:27 Neurons, spatially distributed, stochastic computer, See Computer modeling differential equation models for, continuous diffusion, random genetic 112:207 drift and selection in a triallelic locus, see also BVP neuron model 108:127 Nonlinear elasticity theory, a new approach cumulative damage, fitting cancer mor- to modeling growth and classification tality data with, 108:57 of a solid tumor via 111:169 of dynamics of receptor potential in a Nonlinear optimization, predictions of an- mechanoreceptor, 110:139 tagonistic muscular activity using, four-proton families, for pH-dependent 111:217 enzyme activation: application to brush Nonresponders, on using Lehmann alter- border sucrase, 110:1 natives with, 109:69 four-state, See Four-state models Numerical model, nonlinear, of percuta- genetic, of branching process with emi- neous drug absorption, 108:157 gration, 111:159 mathematical, See Mathematical Optimization, linearly constrained, improv- model... ing Tikhonov regularization with, nonlinear batch reactor, structural iden- 112:55 tifiability of the parameters of, 108:241 Oxygen delivery to tissue, effects of chemi- nonlinear matrix, compensation and sta- cal kinetics on, 108:253 bility in, 110:67 numerical, See Numerical models Parity-dependent immigration-birth- nutrient cycling, effects of time lags on death-emigration process, 109:177 transient characteristics of, 109:151 Parity progression ratios, estimation of, population, in a periodically fluctuating from truncated distribution of closed environment, periodic solutions of, and open birth intervals, 110:181 110:17 Periodic pulse inputs, response characteris- predator-prey, See Predator—prey tics of BVP neuron model to, 112:243 models Periodic solutions of population models in of renal medulla, See Central core model periodically fluctuating environment, of renal medulla 110:17 simple demographic, of HIV/AIDS, Permanence and the dynamics of biological asymptotic worst-case mixing in, systems, 111:1 108:141 Persistence and periodic orbits of three- sexual mixing: a comparison of analogue competitor model with refuges, deterministic and stochastic models, 108:105 108:279 pH-dependent enzyme activation, a four- stochastic, See Stochastic models proton-families model for, application SUBJECT INDEX to intestinal brush border sucrase, for ion channels: introduction and bibli- 110:1 ography, 112:187 Phylogenetic inference, necessary and suf- of lesion induction and repair in yeast, ficient conditions for the existence of 112:261 linear invariants in, 108:203 two-state recurrent, with time-dependent Plurality rule, interpreting consensus se- transition rates, 111:249 quences based on, 111:231 Structural identifiability of the parameters Population dynamics, time-discrete integral of a nonlinear batch reactor model, model of, bifurcations and chaos in, 108:241 109:99 Subcritical collapse of predator popula- Populations, growing, epidemic and demo- tions in discrete-time predator-prey graphic interaction in the spread of models, 110:45 potentially fatal diseases in, 111:99 Survival time Predator—prey models, discrete-time, the host, for tumors containing drug- subcritical collapse of predator popu- resistant cells, low-intensity combina- lations in, 110:45 tion chemotherapy maximizes, 110:221 Predator—prey populations, persistence in optimal control of tumor size used to models of three interacting, remarks maximize, when cells are resistant to on, 110:125 chemotherapy, 110:201 Predictions of antagonistic muscular activ- Sustainable yield, maximum, of populations ity using nonlinear optimization, with continuous age structure, 110:253 111:217 Symmetries of S-systems, 109:19 Radiation, ionizing, See Ionizing radiation Tikhonov regularization, improving with Random and genetic drift and selection in linearly constrained optimization, a triallelic locus: a continuous diffu- 112:55 sion model, 108:127 Time-dependent transition rates, a two- Receptor potential in a mechanoreceptor, state recurrent stochastic model with, model of the dynamics of, 110:139 111:249 Reproduction ratio, basic, effects of aver- Time lags, effects on transient characteris- aging on, 111:89 tics of a nutrient cycling model, Renal medulla, See Central core model of 109:151 renal medulla Tumor, spherical, diffusion of an inhibitor Retinal ganglion cells, modeling the vari- in, 108:75 ability of firing rate of, 112:225 Tumors containing drug-resistant cells, Role of multiple somatic point mutations low-intensity combination chemother- in metastatic progression, 108:81 apy maximizes host survival time for, 110:221 Scatchard plots, interpretation of, for ag- Tumor size, optimal control of, used to gregating receptor systems, 112:115 maximize survival time when cells are Sexual mixing models: a comparison of resistant to chemotherapy, 110:201 analogue deterministic and stochastic Two-person games, symmetric extensive, models, 108:279 evolutionarily stable sets in, 108:179 Smooth muscle, four-state models and reg- ulation and contraction of, 112:1, 31 Two-state recurrent stochastic model with Spacing in one dimension, a measure of, time-dependent transition rates, 109:11 111:249 S-systems, symmetries of, 109:19 Stability in nonlinear matrix models, com- Variance components for discordances, pensation and, 110:67 110:119 Stochastic models differential equation, for spatially dis- Yeast, lesion induction and repair in, tributed neurons, 112:207 stochastic models of, 112:261