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Making and using antibodies : a practical handbook PDF

446 Pages·2013·18.23 MB·English
by  Howard
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SECOND EDITION MAK ING AND USING ANTIBODIES A Practical Handbook Edited by Gary C. Howard Matthew R. Kaser SECOND EDITION MAKING AND USING ANTIBODIES A Practical Handbook Edited by Gary C. Howard Matthew R. Kaser Boca Raton London New York CRC Press is an imprint of the Taylor & Francis Group, an informa business MATLAB® is a trademark of The MathWorks, Inc. and is used with permission. The MathWorks does not warrant the accu- racy of the text or exercises in this book. This book’s use or discussion of MATLAB® software or related products does not constitute endorsement or sponsorship by The MathWorks of a particular pedagogical approach or particular use of the MATLAB® software. CRC Press Taylor & Francis Group 6000 Broken Sound Parkway NW, Suite 300 Boca Raton, FL 33487-2742 © 2014 by Taylor & Francis Group, LLC CRC Press is an imprint of Taylor & Francis Group, an Informa business No claim to original U.S. Government works Version Date: 20130531 International Standard Book Number-13: 978-1-4398-6910-9 (eBook - PDF) This book contains information obtained from authentic and highly regarded sources. While all reasonable efforts have been made to publish reliable data and information, neither the author[s] nor the publisher can accept any legal responsibil- ity or liability for any errors or omissions that may be made. The publishers wish to make clear that any views or opinions expressed in this book by individual editors, authors or contributors are personal to them and do not necessarily reflect the views/opinions of the publishers. The information or guidance contained in this book is intended for use by medical, scientific or health-care professionals and is provided strictly as a supplement to the medical or other professional’s own judgement, their knowledge of the patient’s medical history, relevant manufacturer’s instructions and the appropriate best practice guidelines. Because of the rapid advances in medical science, any information or advice on dosages, procedures or diagnoses should be independently verified. The reader is strongly urged to consult the drug companies’ printed instruc- tions, and their websites, before administering any of the drugs recommended in this book. This book does not indicate whether a particular treatment is appropriate or suitable for a particular individual. Ultimately it is the sole responsibility of the medical professional to make his or her own professional judgements, so as to advise and treat patients appropriately. The authors and publishers have also attempted to trace the copyright holders of all material reproduced in this publication and apologize to copyright holders if permission to publish in this form has not been obtained. If any copyright material has not been acknowledged please write and let us know so we may rectify in any future reprint. Except as permitted under U.S. Copyright Law, no part of this book may be reprinted, reproduced, transmitted, or utilized in any form by any electronic, mechanical, or other means, now known or hereafter invented, including photocopying, micro- filming, and recording, or in any information storage or retrieval system, without written permission from the publishers. For permission to photocopy or use material electronically from this work, please access www.copyright.com (http://www. copyright.com/) or contact the Copyright Clearance Center, Inc. (CCC), 222 Rosewood Drive, Danvers, MA 01923, 978-750- 8400. CCC is a not-for-profit organization that provides licenses and registration for a variety of users. For organizations that have been granted a photocopy license by the CCC, a separate system of payment has been arranged. Trademark Notice: Product or corporate names may be trademarks or registered trademarks, and are used only for identi- fication and explanation without intent to infringe. Visit the Taylor & Francis Web site at http://www.taylorandfrancis.com and the CRC Press Web site at http://www.crcpress.com This book is dedicated to Cindy, Sebastian, Isabella, Christina, and Francesca (MRK), and to Shirley, Rebecca, and Amanda (GCH). Contents Preface......................................................................................................................vii Acknowledgment ......................................................................................................ix Editors .......................................................................................................................xi Contributors ...........................................................................................................xiii Chapter 1 Antibodies ............................................................................................1 Matthew R. Kaser and Gary C. Howard Chapter 2 Antigens and Adjuvants .......................................................................7 Paul Algate, Jory Baldridge, and Sally P. Mossman Chapter 3 Production of Polyclonal Antibodies ..................................................33 Lon V. Kendall Chapter 4 Purification and Characterization of Antibodies ...............................67 Joseph P. Chandler Chapter 5 Production of Monoclonal Antibodies ...............................................97 Kathleen C. F. Sheehan Chapter 6 Quantitative Production of Monoclonal Antibodies ........................119 David A. Fox and Elizabeth M. Smith Chapter 7 Making Antibodies in Bacteria ........................................................151 Frederic A. Fellouse and Sachdev S. Sidhu Chapter 8 In Vitro Selection of Aptamers .........................................................173 Tianjiao Wang, Xiangyu Cong, and Marit Nilsen-Hamilton Chapter 9 Chemical and Proteolytic Modification of Antibodies ....................207 George P. Smith v vi Contents Chapter 10 Western Blots and Other Applications .............................................275 Lee Bendickson and Marit Nilsen-Hamilton Chapter 11 Immunohistochemical Methods .......................................................303 José A. Ramos-Vara Chapter 12 Immunoelectron Microscopy ...........................................................343 Sara E. Miller and David N. Howell Chapter 13 Flow Cytometry ...............................................................................371 Steven B. McClellan Chapter 14 ELISAs .............................................................................................385 John Chen and Gary C. Howard Chapter 15 Humanization of Antibodies ............................................................395 Juan Carlos Almagro, Sreekumar Kodangattil, and Jian Li Chapter 16 Antibodies in the Future: Challenges and Opportunities .................421 Gary C. Howard and Matthew R. Kaser Index ......................................................................................................................429 Preface Antibodies are some of the most extraordinary proteins ever to evolve during the history of life on Earth. They protect us from a wide range of infectious diseases and cancers. For science, these “magic bullets” have become an indispensable tool. In biology, they have been a key component of the surge in fundamental knowledge that has occurred in the last quarter century. They are relatively easy to make and use, have great flexibility in applications, and are cost-effective for most labs. As well as being generated for use in conventional immune response research, they have been used in many other different aspects of basic research, including identification of modified proteins and enzymes, of transcription factors, of membrane proteins, as well as immunoprecipitation of unknown proteins having a known epitope. In medi- cine, multiple vaccines have led to the control (at least in the developed world) of many infectious diseases, including polio, mumps, measles, and chicken pox, as well as the eradication of smallpox, and are being increasingly used to combat cancer. We hope this methods book will be useful to biomedical researchers and students, although new methods for making and using antibodies will certainly be found. In this edition, we added chapters on the use of aptamers and the humanization of antibodies. Nevertheless, the many current applications—ELISAs, western blotting, immunohistochemistry, and flow cytometry—are so powerful that they will remain critical to biomedical science for a considerable period. MATLAB® is a registered trademark of The MathWorks, Inc. For product informa- tion, please contact: The MathWorks, Inc. 3 Apple Hill Drive Natick, MA 01760-2098 USA Tel: 508 647 7000 Fax: 508-647-7001 E-mail: [email protected] Web: www.mathworks.com vii Acknowledgment We thank the contributors to this volume. Their professional knowledge, excellent writing, and enthusiastic support made this possible outcome of this book. ix

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"This second edition provides guidance on all aspects of how to make and use antibodies for research, and commercial and industrial applications. All chapters are revised, updated, or expanded. New material in the book includes western blotting, aptamers, antibodies as therapeutics, quantitative pro
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