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International Journal of Mass Spectrometry International Journal of Mass Spectrometry 234 (2004) 227 www.elsevier.com/locate/ijms Author index Volume 234 Angstrém, 5, 137 Ivleva, V.B., 203 O’Hair, R.A.J., 101 Bailey, T.H., 89 Jaber, A.J., 153 PaSa-Toli¢, L., 131 Bigwarfe Jr., PM., 185 Patrie, S.M., 175 Budnik, B.A., 203 Kaufman, J.M., 153 Peter-Katalini¢, J., 11 Kelleher, N.L., 175 Pires de Matos, A., 51 Carlsohn, E., 137 Kusagi, I., 171 Pittman, J.L., 203 Carretas, J.M., 51 Cong, X., 71 Laskin, J., 89 Robinson, D.E., 175 Cooper, H.J., 23 Lebrilla, C.B., 71 Robinson, E.W., | Costello, C.E., 203 Lifshitz, C., 63 Limbach, P.A., 37 Schultz, K.N., 123 Davidsson, P., 145 Schweikhard, L., 161 de Peredo, A.G., 11 Maéek, B., 11 Sihlbom, C., 145 Du; Y., 175 Maekawa, Y., 171 Simonsick Jr., W.J., 153 Marcalo, J., 51 Smith, R.D., 131 Emmett, M.R., 137, 145 Marshall, A.G., 23, 137, 145 Sommer, U., 203 Mason, C.J., 79 Stump, M.J., 153 Frahm, J.L., 79 Masselon, C.D., 131 Freitas, M.A., 213 McFadyen, W.D., 101 Udseth, H.R., 131 Futrell, J.H., 89 Meng, F., 175 Uggerud, E., 45 Meng, Z., 37 Gorshkov, M.V., 131 Mormann, M., 11 Wee, S., 101 Grigorean, G., 71 Moyer, S.C., 203 Wilkins, C.L., 153 Muddiman, D.C., 79 Williams, E.R., 1 Hakansson, K., 123 Wong, R.L., 1 Herlert, A., 161 Nibbering, N.M.M., 171 Wood, T.D., 185 Hofsteenge, J., 11 Nikolaev, E.N., 131 Hudgins, R.R., 23 Nilsson, C.L., 137, 145 Yamaoka, H., 171 Isa, K., 171 O’Connor, P.B., 203 Zhang, L., 213 doi: 10.1016/S 1387-3806(04)00199-X International Journal of ' ELSEVIE*t e s, Mass Spectrometry International Journal of Mass Spectrometry 234 (2004) 229-232 www.elsevier.com/locate/ijms Subject index Volume 234 Acid-base reaction 7-Deaza On the double benzylic hydrogen migration in the molecular ion of N- Utility of accurate monoisotopic mass measurements to confidently (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 identify lambda exonuclease generated single-stranded amplicons con- Alcohols taining 7-deaza analogs by electrospray ionization FT-ICR mass spec- Gas-phase reactions of lanthanide cations with alcohols, 51 trometry, 79 Amino acid clusters Deuterium labeling A review of gas-phase H/D exchange experiments: the protonated On the double benzylic hydrogen migration in the molecular ion of N- arginine dimer and bradykinin nonapeptide systems, 63 (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 Average nucleotide Dissociation kinetics Utility of accurate monoisotopic mass measurements to confidently Activation of protonated peptides and molecular ions of small molecules identify lambda exonuclease generated single-stranded amplicons con- using heated filaments in Fourier-transform ion cyclotron resonance taining 7-deaza analogs by electrospray ionization FT-ICR mass spec- mass spectrometry, | trometry, 79 Disulfide bond Electron capture dissociation of the disulfide bond—a quantum che- BIRD mical model study, 45 Activation of protonated peptides and molecular ions of small molecules DNA using heated filaments in Fourier-transform ion cyclotron resonance Rapid electron capture dissociation of mass-selectively accumulated mass spectrometry, | oligodeoxynucleotide dications, 123 Bottom-up Double hydrogen rearrangement Effect of ionization mode in the analysis of proteolytic protein digests, On the double benzylic hydrogen migration in the molecular ion of 185 N-(5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 Branched peptides Dual-electrospray source Electron capture dissociation Fourier transform ion cyclotron resonance Utility of accurate monoisotopic mass measurements to confidently mass spectrometry of cyclodepsipeptides, branched peptides, and identify lambda exonuclease generated single-stranded amplicons con- &-peptides, 23 taining 7-deaza analogs by electrospray ionization FT-ICR mass spectrometry, 79 Cation Interference from multiple cations in MALDI-MS spectra of copoly- Electron capture dissociation (ECD) mers, 153 Structural studies on protein O-fucosylation by electron capture dis- Cerebrospinal fluid sociation, 11 Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, Electron capture dissociation Fourier transform ion cyclotron resonance 145 mass spectrometry of cyclodepsipeptides, branched peptides, and Chiral analyses €-peptides, 23 Chiral analyses of peptides by ion/molecule reactions, 71 Electron capture dissociation oi the disulfide bond—a quantum che- CID mical model study, 45 RNase mapping of intact nucleic acids by electrospray ionization Rapid electron capture dissociation of mass-selectively accumulated Fourier transform ion cyclotron resonance mass spectrometry (ESI- oligodeoxynucleotide dications, 123 FTICRMS) and '*O labeling, 37 Considerations for electron capture dissociation efficiency in FTICR Conformers mass spectrometry, 131 A review of gas-phase H/D exchange experiments: the protonated Electron captured dissociation (ECD) arginine dimer and bradykinin nonapeptide systems, 63 Comparison of peptide mass mapping and electron capture dissociation Copolymers as assays for histone posttranslational modifications, 213 Interference from multiple cations in MALDI-MS spectra of copoly- Electron emission mers, 153 The influence of spontaneous m/z-changes on the ion motion in an ion Cross-linking cyclotron resonance trap, 161 Chemical cross-linking of the urease complex from Helicobacter pylori Electrospray and analysis by Fourier transform ion cyclotron resonance mass spectro- Rapid electron capture dissociation of mass-selectively accumulated metry and molecular modeling, 137 oligodeoxynucleotide dications, 123 Cu(II) complexes Electrospray ionization Comparing the gas-phase fragmentation reactions of protonated and Comparing the gas-phase fragmentation reactions of protonated and radical cations of the tripeptides GXR, 101 radical cations of the tripeptides GXR, 101 Cyclodepsipeptides Endonuclease Electron capture dissociation Fourier transform ion cyclotron resonance RNase mapping of intact nucleic acids by electrospray ionization mass spectrometry of cyclodepsipeptides, branched peptides, and &- Fourier transform ion cyclotron resonance mass spectrometry (ESI- peptides, 23 FTICRMS) and '*O labeling, 37 doi: 10.1016/S 1387-3806(04)00200-3 Subject index Strategies for automating top-down protein analysis with Q-FTICR MS, A review of gas-phase H/D exchange experiments: the protonated 175 arginine dimer and bradykinin nonapeptide systems, 63 High pressure MALDI-FTMS: implications for proteomics, 203 Rapid electron capture dissociation of mass-selectively accumulated Fucosylation oligodeoxynucleotide dications, 123 Structural studies on protein O-fucosylation by electron capture dissociation, 11 Filaments dissociation Gas phase Activation of protonated peptides and molecular ions of smali molecules Gas-phase reactions of lanthanide cations with alcohols, 51 using heated filaments in Fourier-transform ion cyclotron resonance Glycopeptide mass spectrometry, | Structural studies on protein O-fucosylation by electron capture dis- Flow tube sociation, 11 A review of gas-phase H/D exchange experiments: the protonated Glycoprotein arginine dimer and bradykinin nonapeptide systems, 63 Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, Fourier transform 145 Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, Graybody 145 Activation of protonated peptides and molecular ions of small molecules Fourier transform ion cyclotron resonance using heated filaments in Fourier-transform ion cyclotron resonance Rapid electron capture dissociation of mass-selectively accumulated mass spectrometry, | oligodeoxynucleotide dications, 123 Fragmentation energetics Fragmentation energetics for angiotensin II and its analogs from H/D exchange time- and energy-resolved surface-induced dissociation studies A review of gas-phase H/D exchange experiments: the protonated 89 arginine dimer and bradykinin nonapeptide systems, 63 FT-ICR Histone posttranslational modifications Activation of protonated peptides and molecular ions of small molecules Comparison of peptide mass mapping and electron capture using heated filaments in Fourier-transform ion cyclotron resonance dissociation as assays for histone posttranslational modifications mass spectrometry, | 213 Electron capture dissociation Fourier transform ion cyclotron resonance mass spectrometry of cyclodepsipeptides, branched peptides, and &- ICR peptides, 23 Rapid electron capture dissociation of mass-selectively accumulated RNase mapping of intact nucleic acids by electrospray ionization oligodeoxynucleotide dications, 123 Fourier transform ion cyclotron resonance mass spectrometry (ESI- Interference FTICRMS) and '*O labeling, 37 Interference from multiple cations in MALDI-MS spectra of copoly- A review of gas-phase H/D exchange experiments: the protonated mers, 153 arginine dimer and bradykinin nonapeptide systems, 63 Ion cyclotron resonance Utility of accurate monoisotopic mass measurements to confidently Glycoproteomics of cerebrospinal fluid in neurodegenerative disease identify lambda exonuclease generated single-stranded amplicons con- 145 taining 7-deaza analogs by electrospray ionization FT-ICR mass spec- Ton loss trometry, 79 The influence of spontaneous m/z-changes on the ion motion in an ion Rapid electron capture dissociation of mass-selectively accumulated cyclotron resonance trap, 161 oligodeoxynucleotide dications, 123 Ion/molecule complex Strategies for automating top-down protein analysis with Q-FTICR MS, On the double benzylic hydrogen migration in the molecular ion of N- 175 (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 FT-ICR MS Ion/molecule reactions Gas-phase reactions of lanthanide cations with alcohols, 51 Chiral analyses of peptides by ion/molecule reactions, 71 Fragmentation energetics for angiotensin II and its analogs from Ion motion time- and energy-resolved surface-induced dissociation studies The influence of spontaneous m/z-changes on the ion motion in an ion 89 cyclotron resonance trap, 161 Considerations for electron capture dissociation efficiency in FTICR Jonization mass spectrometry, 131 Effect of ionization mode in the analysis of proteolytic protein digests, Chemical cross-linking of the urease complex from Helicobacter pylori 185 and analysis by Fourier transform ion cyclotron resonance mass spectro- IRMPD metry and molecular modeling, 137 Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, 145 145 Isotope labeling FTMS RNase mapping of intact nucleic acids by electrospray ionization RNase mapping of intact nucleic acids by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI- Fourier transform ion cyclotron resonance mass spectrometry (ESI- FTICRMS) and '*O labeling, 37 FTICRMS) and '*O labeling, 37 Rapid electron capture dissociation of mass-selectively accumulated oligodeoxynucleotide dications, 123 Lanthanide ions Chemical cross-linking of the urease complex from Helicobacter pylori Gas-phase reactions of lanthanide cations with alcohols, 51 and analysis by Fourier transform ion cyclotron resonance mass spectro- LC-MS peptide mapping metry and molecular modeling, 137 Comparison of peptide mass mapping and electron capture Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, dissociation as assays for histone posttranslational modifications 145 213 Subject index Leucine-isoleucine distinction Oligoribonucleotide Comparing the gas-phase fragmentation reactions of protonated and RNase mapping of intact nucleic acids by electrospray ionization radical cations of the tripeptides GXR, 101 Fourier transform ion cyclotron resonance mass spectrometry (ESI- FTICRMS) and '*O labeling, 37 MALDI Interference from multiple cations in MALDI-MS spectra of copoly- Penning trap mers, 153 The influence of spontaneous m/z-changes on the ion motion in an ion High pressure MALDI-FTMS: implications for proteomics, 203 cyclotron resonance trap, 161 Mannosylation €-Peptides Structural studies on protein O-fucosylation by electron capture dis- Electron capture dissociation Fourier transform ion cyclotron resonance sociation, 11 mass spectrometry of cyclodepsipeptides, branched peptides, and ¢- Mass fingerprint peptides, 23 Effect of ionization mode in the analysis of proteolytic protein digests, Peptides 185 A review of gas-phase H/D exchange experiments: the protonated Mass measurement accuracy arginine dimer and bradykinin nonapeptide systems, 63 Utility of accurate monoisotopic mass measurements to confidently Chiral analyses of peptides by ion/molecule reactions, 71 identify lambda exonuclease generated single-stranded amplicons con- N-(5-Phenylvaleryl)-1-azacyclopentane-2-thione taining 7-deaza analogs by electrospray ionization FT-ICR mass spec- On the double benzylic hydrogen migration in the molecular ion of N- trometry, 79 (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 Mass spectrometry Posttranscriptional modifications Rapid electron capture dissociation of mass-selectively accumulated RNase mapping of intact nucleic acids by electrospray ionization oligodeoxynucleotide dications, 123 Fourier transform ion cyclotron resonance mass spectrometry (ESI- Mechanism FTICRMS) and '*O labeling, 37 On the double benzylic hydrogen migration in the molecular ion of N- Proteomics (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 Strategies for automating top-down protein analysis with Q-FTICR MS, Metastable ions 175 On the double benzylic hydrogen migration in the molecular ion of N- High pressure MALDI-FTMS: implications for proteomics, 203 (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 Protonated peptides Methylations Fragmentation energetics for angiotensin II and its analogs from time- RNase mapping of intact nucleic acids by electrospray ionization and energy-resolved surface-induced dissociation studies, 89 Fourier transform ion cyclotron resonance mass spectrometry (ESI- Comparing the gas-phase fragmentation reactions of protonated and FTICRMS) and '*O labeling, 37 radical cations of the tripeptides GXR, 101 Mobile proton Comparing the gas-phase fragmentation reactions of protonated and Radical cations of peptides radical cations of the tripeptides GXR, 101 Comparing the gas-phase fragmentation reactions of protonated and Mobile radical radical cations of the tripeptides GXR, 101 Comparing the gas-phase fragmentation reactions of protonated and Radical directed fragmentation radical cations of the tripeptides GXR, 101 Comparing the gas-phase fragmentation reactions of protonated and Molecular modeling radical cations of the tripeptides GXR, 101 Chemical cross-linking of the urease complex from Helicobacter pylori Reaction entropy and analysis by Fourier transform ion cyclotron resonance mass spectro- Fragmentation energetics for angiotensin II and its analogs from metry and molecular modeling, 137 time- and energy-resolved surface-induced dissociation studies MS/MS 89 RNase mapping of intact nucleic acids by electrospray ionization RNA sequencing Fourier transform ion cyclotron resonance mass spectrometry (ESI- FTICRMS) and '8O labeling, 37 RNase mapping of intact nucleic acids by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI- Glycoproteomics of cerebrospinal fluid in neurodegenerative disease, FTICRMS) and '*O labeling, 37 145 RNase T1 Multiply-charged ions RNase mapping of intact nucleic acids by electrospray ionization The influence of spontaneous m/z-changes on the ion motion in an ion Fourier transform ion cyclotron resonance mass spectrometry (ESI- cyclotron resonance trap, 161 FTICRMS) and '*O labeling, 37 Multipe charges RRKM modeling High pressure MALDI-FTMS: implications for proteomics, 203 Fragmentation energetics for angiotensin II and its analogs from Multisector mass spectrometry time- and energy-resolved surface-induced dissociation studies On the double benzylic hydrogen migration in the molecular ion of N- 89 (5-phenylvaleryl)-1-azacyclopentane-2-thione, 171 Multistage mass spectrometry Comparing the gas-phase fragmentation reactions of protonated and Selective cleavage radical cations of the tripeptides GXR, 101 Fragmentation energetics for angiotensin II and its analogs from time- and energy-resolved surface-induced dissociation studies, 89 Site-specific rate constants Oligonucleotides A review of gas-phase H/D exchange experiments: the protonated RNase mapping of intact nucleic acids by electrospray ionization arginine dimer and bradykinin nonapeptide systems, 63 Fourier transform ion cyclotron resonance mass spectrometry (ESI- SORI FTICRMS) and '*O labeling, 37 RNase mapping of intact nucleic acids by electrospray ionization Rapid electron capture dissociation of mass-selectively accumulated Fourier transform ion cyclotron resonance mass spectrometry (ESI- oligodeoxynucleotide dications, 123 FTICRMS) and 'SO labeling, 37 232 Subject index Considerations for electron capture dissociation efficiency in FTICR Fourier transform ion cyclotron resonance mass spectrometry (ESI- mass spectrometry. 131 FTICRMS) and 'SO labeling, 37 Surface-induced dissociation Fragmentation energetics for angiotensin II and its analogs from time- Urease and energy-resolved surface-induced dissociation studies, 89 Chemical cross-linking of the urease complex from Helicobacter pylori and analysis by Fourier transform ion cyclotron resonance mass spectro- Top-down metry and molecular modeling, 137 Strategies for automating top-down protein analysis with Q-FTICR MS, 175 Zero-energy electrons tRNA Electron capture dissociation of the disulfide bond—a quantum che- RNase mapping of intact nucleic acids by electrospray ionization mical model study, 45