Implementation and Redesign of Catalytic Function in Biopolymers PDF
Preview Implementation and Redesign of Catalytic Function in Biopolymers
Topics in Current Chemistry Editorial Board: A. de Meijere K. N. Houk H. Kessler J.-M.L ehn S.V. Ley S. L. Schreiber J. Thiem B.M. Trost F. Vogtle H. Yamamoto Springer Berlin Heidelberg New York Barcelona Hong Kong London Milan Paris Singapore Tokyo Implementation and Redesign of Catalytic Function in Biopolymers Volume Editor: F. P. Schmidtchen With contributions by L. Baltzer, A. R. Chamberlin, K. A. McDonnell, M. Famulok, M. A. Gilmore, B. Imperiali, A. Jenne, M. Shogren-Knaak, L. E. Steward Springer This series presents critical reviews of the present position and future trends in modern chemical research. It is addressed to all research and industrial chemists who wish to keep abreast of advances in the topics covered. As a rule, contributions are specially commissioned. The editors and publishers will, however, always be pleased to receive suggestions and supplementary information. Papers are accepted for "Topics in Current Chemistry" in English. In references Topics in Current Chemistry is abbreviated Top. Curr. Chem. and is cited as a journal. Springer WWW home page: http:/iwww.springer.de Visit the TCC home page at http://link.springer.de/series/tcc ISSN 0340-1022 ISBN 3-540-65728-2 Springer-Verlag Berlin Heidelberg New York Library of Congress Catalog Card Number 74-644622 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other ways, and storage in data banks. Duplication of this publication or parts thereof is only permitted under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer-Verlag.V iolations are liable for prosecution under the German Copyright Law. O Springer-Verlag Berlin Heidelberg 1999 Printed in Germany The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: Friedhelm Steinen-Broo, Barcelona; MEDIO, Berlin Typesetting: Fotosatz-Service Kohler GmbH, 97084 Wiirzburg SPIN: 10649327 0213020 - 5 4 3 2 1 0 - Printed on acid-free paper Volume Editor Prof. Dr. Franz P. Schmidtchen Institut fiir Organische Chemie und Biochemie Technische Universitat Miinchen 0-85747 Garching, Germany E-mail:F Topics in Current Chemistry Now Also Available Electronically For all customers with a standing order for Topics in Current Chemistry we offer the electronic form via LINK free of charge. Please contact your librarian who can receive a password for free access to the full articles. By registration at: If you do not have a standing order you can nevertheless browse through the table of contents of the volumes and the abstracts of each article at: There you will also find information about the - Editorial Board - Aims and Scope - Instructions for Authors Preface Even today low molecular weight enzyme models generally still do not have the power of natural biocatalysts. While certain aspects of biocatalysis like substrate-, chemo-, regio- or stereoselectivity or even regulatory features can be mimicked at least phenomenologically by abiotic counterparts, it is the absolute magnitude of the catalytic activity that eludes imitation by artificial enzyme surrogates. Thus, it seems debatable whether or not a simple reductionistic approach to understanding biocatalysis must be supplemented or even replaced by concepts that include and consider the polymeric nature of biocatalysts and the properties derived therefrom. Following this reasoning, a rational route for proceeding calls for the deliber- ate and prudent exchange of functions or structural motifs or the addition of new ones in fully functional biopolymers and observe the consequences in terms of stability and catalytic activity. There is hope that a limited structural modification at one particular site will entail a locally limited response that can be dissected and analyzed. The results emerging in the context of the functional catalyst are expected to be more readily translated into measures to be taken for the improvement of catalytic function. Prerequisites to this approach are methods of incorporating non-natural moieties at predetermined positions in the biopolymer. This volume is meant to serve as a source in this respect describing the state of the art of some major lines of attack with this goal in mind. As a modern alternative, the creation of novel catalysts by directed evolution of nucleic acid aptamers is included. In this case, too, it is of prime importance to learn about the structural details which cooperate to bring about the catalytic function underlying the selection process. Garching, April 1999 Franz P. Schmidtchen Contents Design and Construction of Novel Peptides and Proteins by Tailored Incorporation of Coenzyme Functionality B. Imperiali, K.A. McDonnell, M. Shogren-Knaak . . . . . . . . . Functionalization and Properties of Designed Folded Polypeptides L. Baltzer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 39 Incorporation of Noncoded Amino Acids by In Vitro Protein Biosynthesis M. A. Gilmore, L.E. Steward, A.R. Chamberlin . . . . . . . . . . . . . . . 77 Catalysis Based on Nucleic Acid Structures M. Famulok, A. Jenne . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101 Author Index Volumes 201 - 202 . . . . . . . . . . . . . . . . . . . . . . . 133 Contents of Volume 195 Biosyn thesis Polyketides and Vitamins Volume Editors: F. J. Leeper, J. C. Vederas ISBN 3-540-63418-5 Application of Isotopic Methods to Secondary Metabolic Pathways T. J. Simpson The Biosynthesis of Aliphatic Polyketides J. Staunton, B. Wilkinson Cofactor Biosynthesis: A Mechanistic Perspective T. P. Begley, C. Kinsland, S. Taylor, M. Tandon, R. Nicewonger, M. Wu, H.-J. Chiu, N. Kelleher, N. Campobasso,Y. Zhang Biosynthesis of Vitamin B,, A. R. Battersby, F. J. Leeper Contents of Volume 200 Biocatalysis From Discovery to Application Volume Editor: W.-D. Fessner ISBN 3-540-64942-5 Screening for Novel Enzymes D.C. Demirjian, P.C. Shah, F. Moris-Varas Superior Biocatalysts by Directed Evolution M.T. Reetz, K.-E. Jaeger Catalytic Antibodies for Organic Synthesis J.-L. Reymond Immobilized Enzymes: Methods and Applications W. Tischer, F. Wedekind Phospholipases as Synthetic Catalysts S. Servi Biocatalytic Approaches for the Synthesis of Enantiopure Epoxides A. Archelas, R. Furstoss Oxynitrilases: From Cyanogenesis to Asymmetric Synthesis M. Schmidt, H. Griengl Glycosyltransferase-CatalyzedS ynthesis of Non-Natural Oligosaccharides R. Ohrlein Design and Construction of Novel Peptides and Proteins by Tailored Incorporation of Coenzyme Functionality Barbara Imperiali* · Kevin A. McDonnell · Michael Shogren-Knaak Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. E-mail:
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