Fossil Chironomids as Indicators of Water Quality Impacts from Aquaculture Activities by Saloni Clerk A thesis submined to the Department of Biology in conformity with the requirements for the degree of Master of Science Queen's University Kingston. Ontario. Canada January. 2002 Copyright 8 Saloni Clerk. 2002 National Library Bibliothèque nationale du Canada Acquisitions and Acquisitions et Bibliographie Services services bibliographiques 395 Wdington Street 395, rue WeYington Otbwâ ON KiA ON4 ûüawaON K l A W CaMda Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence aliowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sen reproduire, prêter, distribuer ou copies of this thesis in microfonn, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/film, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substanttial extracts fiom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent ê eim primés reproduced without the author' s ou autrement reproduits sans son permission. autorisation. ABSTRACT Aquaculture activities pose a fairly new threat to water quality of inland lakes. Discharge of fish wastes and uneaten fish food can contribute significafii nutrients to lakes and Iead to potentially serious eutrophication problems. Hypolimnetic anoxia resulting from aquaculture activities is of panicular concem. as low oxygen conditions can be harmful to both the aquatic environment as well as fish farming activities themselves. Assessing the impact of aquaculture activities on deepwater oxvgen levels is difficult. as monitoring data were rarely gathered regarding pre-impact conditions. Paleolimnological investigations were carried out in the Nonh Channel of Lake Huron and in Plane Lake. Michigan, to determine water quality impacts from aquaculture activities. Larval Chironomidae (Diptera) head capsule assemblages were used as proxy indicators of oxygen to track changes in deepwater oxygen coinciding with the establishment of fish farming activities. In addition. chironom id m icrofossils were uxd to determine pre-impact conditions and recovery rates in lakes that have supponed intensive aquaculture activities in the past. Fossil c hironom id assern blages from the LaCloche Channel, Lake Huron. indicated that significant deterioration of the oxygen environment coincided with the establishment of cage aquaculture activities. Marked reductions in chironomid taxa that are indicative of well- oxygenated conditions occurred around the estirnated time of fish farming activities. Concurrently, littoral taxa comprised a higher percentage of the chironomid assemblages. In Plaite Lake. Michigan. hatchery effluents had similar impacts on chironomid assemblages. Recovery in the LaCloche Channel as well as Plane Lake were not detected, despite the cessation of cage aquaculture in the LaCloche Channel and significant reductions in nutrient loadings to Platte Lake. These findings are in agreement with available monitoring data. Hence. chironomids infer that long-term impacts in deepwater oxygen conditions may result from aquaculture activities. Regional analyses in the North Channel of Lake Huron. as well as downcore analysis in Lake Wolsey. Manitoulin Island, indicated that site characteristics (production level. length of operation. morphometry. flushing rates), as well as natural and anthropogenic disturbances. are important variables that may modi. the impacts that fish fanning activities have on the environment. CONTRIBUTIONS I conducted al l chironom id analyses in my thesis. Diatorn analysis was performed by Dan Selbie in the Lacloche core (Chapter 2). OP^ dating and diatom analysis was conducted by Petra Werner in Lake Wolsey (Chapter 3). ACKNOWLEDGEMENTS I feel very fortunate to have ken part of the PEARL lab over the past few years. John Smol has been a very supportive supervisor who has always fit me into his busy schedule to provide guidance and encouragement. 1 first learned about chironomids from Roberto Quinlan as a year undergraduate student. Roberto has been a great person to leam from and I am deeply -ilh thankful to him for showing me the ropes again after my year off (it is amazing. what you can forget). 1 am also grateful to Dn. Brian Cumming and Scott Lamoureux for being on my cornmittee and for providing useful suggestions and advice. I appreciate the assistance of Peggy Gale and Gary Whelan in providing data on my study sites and for helping to CO-ordinatef ield work. Thanks also goes to Jennifer Morse and Bronwyn Keatly for their help in prepping samples. Being pan of the PEARL lab has ken a tremendous experience. Everyone has in someway contributed to this thesis and helped me to make the most of my time here at Queen's. For providing scholarly advice. encouragement, and perspective, I thank especially Kat. Francine. Petra and Rene. Fieldwork was a highlight of research and would not have been the same without Petra and Dan (minus the Kung-Foo movies.. .). The lab has definitely been a great leaming and working environment. From debates on musical taste (a G&R fan I will never be! ), cheese parties (1 will find out one day.. .), pronunciation, and Iively discussions on tofu turkeys I thank Neal. Andrew. Dan. and Jon. You guys definiteiy made me count faster! Thanks also to rny dear friends Celeste and Ally for sharing in a11 those life 'moments' and going through this with me. My parents have provided much love and support. Thanks to my brother, Aashish, and sister. Neha. for always king there to count on. TABLE OF CONTENTS ABSTRACT CONTRIBUTIONS ACKNOWLEOGEMENTS TABLE OF CONTENTS LlST OF TABLES LlST OF FIGURES X LlST OF ABBREVIATIONS XII CHAPTER 1: INTRODUCTION AND LITERATURE REVIEW Introduction Literature Review Backgrounri on Cage Culture Nutrient enrichen!f i.om fish fmnrs Environmental impucrs offish farms Assessing impacts of cage culture Importance and conrrol of mygen in lakes. Chiranomid Lije QcIe and EcoZogy Chironomids as Puleoindiccirors CHAPTER 2: WATER QUALITY IMPACTS FROM CAGE AQUACULTURE OPERATIONS IN THE NORTH CHANNEL OF LAKE HURON introduction Site Description LaCIoche Site Bedford Harbour. Eastern 1sl and and Fisher Harbour sires Material and Meth o& .d nalyses Results LaCloche Sire Bedford Harbour. Eartem Island. and Fisher Harbour sites Discussion 40 Conclusions 50 CHAPTER 3: CHIRONOMID-INFERRED CHANGES IN DISSOLVED OXYGEN IN LAKE WOLSEY, MANITOULIN ISLAND: THE EFFECTS OF CAGE AQUACULTURE AND OTHER DISTURBANCES 52 Site Description 53 Materials and Metb ods A nalyses Results and Discussion 59 Conclusions 73 CHAPTER 4: IMPACTS OF HATCHERY EFFLUENTS ON DEEP WATER OXYGEN LEVELS IN PLATTE UKE,M ICHIGAN, BASED ON FOSSIL CHlRONOMlDS 75 Introduction 75 Site description and history flatte River Stute Fish Hutchery Metb ods Sedirnent cores Daring Water contenr and loss on ignition (SG core) Chironornid analyses R nalyses Results and Discussion Sediment duting and core chronolugy Cornparison of /'-CS and stable Pb distributions in sediments Water content and loss on ignitionf or the SG core Chironomid analvses Core chronologv based on chironomid assemblages Chironomid-baced axygen reconst~ionisn Platte Lake Conclusions 110 CHAPTER 5: GENERAL DISCUSSION AND SUMMARY 111 APPENDIX 2A: RAW COUNTS OF CHIRONOMID HEAD CAPSULES IN THE LACLOCHE CHANNEL 128 APPENDIX 2B: ' 3 7 A~C~Tl VlTY IN THE LACLOCHE CHANNEL 129 APPENDIX 2C: SPECIES DlVERSlfY IN THE LACLOCHE CHANNEL 130 APPENDlX 20: HYDROGRAPH OF LAKE HURON 131 APPENDIX 2E: RAW COUNTS OF CHlRONOMlD HEAD CAPSULES IN BEDFORD HARBOUR, FISHER HARBOUR AND EASTERN ISLAND 132 APPENDIX 3A: M WC OUNTS OF CHlRONOMlD HEAD CAPSULES IN LAKE WOLSEY 133 APQENDIX 4A: RAW COUNTS OF CHIRONOMID HEAD CAPSULES IN PLATTE LAKE (SG CORE) 134 APPENDIX 4B: RAW COUNTS OF CHlRONOMlD HEAD CAPSULES IN PLATTE LAKE (PL-1 CORE) 135 LIST OF TABLES Table 2.1 Abbreviations for chironomid ta\a in the PCA diagram of species 37 and site scores from the Lacloche Channel Table 3. 1 Physical and chemical characteristics of Lake Wolsey 55 Table 4. 1 Physical and chernical data for Platte Lake 78 Table 4.2 Phosphorus loadings to Big Platte Lake from hatchery effluents 83 from 1977- 1996 Table 4.3 Abbreviations for chironornid taxa in the PCA diagram ofs pecies 98 and site scores from Platte Lake
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