Genomics of Disease PDF
Preview Genomics of Disease
Genomics of Disease J.P. Gustafson, J. Taylor, and G. Stacey Editors Genomics of Disease Editors J.P.Gustafson J.Taylor USDA-ARS UniversityofMissouri UniversityofMissouri DivisionAnimalSciences DepartmentofAgronomy Columbia,MO65211 205CurtisHall USA ColumbiaMO65211 [email protected] USA [email protected] G.Stacey UniversityofMissouri PlantSciencesUnit Columbia,MO65211 USA [email protected] ISBN:978-0-387-76722-2 e-ISBN:978-0-387-76723-9 LibraryofCongressControlNumber:2007943040 (cid:2)c 2008SpringerScience+BusinessMedia,LLC Allrightsreserved.Thisworkmaynotbetranslatedorcopiedinwholeorinpartwithoutthewritten permission ofthepublisher (Springer Science+Business Media, LLC.,233 SpringStreet, New York, NY10013, USA), except for brief excerpts in connection with reviews or scholarly analysis. Use in connectionwithanyformofinformationstorageandretrieval,electronicadaptation,computersoftware, orbysimilarordissimilarmethodologynowknownorhereafterdevelopedisforbidden. Theuseinthispublicationoftradenames,trademarks,servicemarks,andsimilarterms,eveniftheyare notidentifiedassuch,isnottobetakenasanexpressionofopinionastowhetherornottheyaresubjectto proprietaryrights. Whiletheadviceandinformationinthisbookarebelievedtobetrueandaccurateatthedateofgoing topress,neithertheauthorsnortheeditorsnorthepublishercanacceptanylegalresponsibilityforany errorsoromissionsthatmaybemade.Thepublishermakesnowarranty,expressorimplied,withrespect tothematerialcontainedherein. Printedonacid-freepaper 9 8 7 6 5 4 3 2 1 springer.com To Dr. Gordon Kimber in recognition of his effort, support, and commitment to continuationoftheStadlerGeneticsSymposiumovermanyyears.Gordonhasbeen the strongest supporter of the Stadler Genetics Symposium since he co-organized theveryfirstonewithDr.GeorgeRe´deiinMay1969.Hecontinuedorganizingand editingthe Symposiumseriesforseveralyearsandhasalwaysbeentireless in his attendanceandwillingnesstohelpinidentifyingexcellenttopicsandspeakers. Acknowledgments TheeditorsgratefullyacknowledgethegeneroussupportoftheUSDA-ARSandthe followingunits fromthe Universityof Missouri:the College of Agriculture,Food and Natural Resources; the Molecular Biology Program; the Office of Research; theInterdisciplinaryPlantGroup;theCollege ofArtsandSciences;the Schoolof VeterinaryMedicine;thePlantSciencesUnit;andtheSchoolofMedicine.National Research Initiative Grant No. 2006-35205-17455 from the USDA Cooperative State Research, Education,and ExtensionService also supportedthe Symposium. Thecontributors’continuedsupportmadethe24thStadlerGeneticsSymposiuma success. The speakers, who spent a tremendousamount of time preparing their presen- tations and manuscripts, are gratefullyacknowledged.Withouttheir expertise and dedication,theSymposiumcouldnothavetakenplace. Wewishtothankallofthelocalchairpersonsforensuringthatallofthespeakers werewelltakencareofduringtheSymposium. Sandi Strother from Conferences and Specialized Courses, University of Missouri, who tirelessly handled all of our requirements and made sure that everything was well organized, excellently handled the behind-the-scenes and on-sitepreparations.Withouther,noneofthiswouldhavebeenpossible AveryspecialthanksgoestoArturoGarcia,USDA-ARS,Columbia,Missouri, for all of his excellentsuggestionsin editing the figures and the text to fit a book format. vii Contents Roles of Plant Hormones in Plant Resistance andSusceptibilitytoPathogens ...................................... 1 LionelNavarro,RajendraBari, AlexandreSeilaniantz,AdnaneNemri, andJonathanD.G.Jones CanineGeneticsFacilitatesUnderstandingofHumanBiology........... 11 ElaineA.Ostrander,HeidiG.Parker,andNathanB.Sutter Xanthomonas oryzae pv. oryzae AvrXA21 Activity Is Dependent onaTypeOneSecretionSystem,IsRegulatedbyaTwo-Component Regulatory System that Responds to Cell Population Density, andIsConservedinOtherXanthomonasspp........................... 25 Sang-WonLee,Sang-WookHan,LauraE.Bartley,andPamelaC.Ronald Unraveling the Genetic Mysteries of the Cat: New Discoveries inFeline-InheritedDiseasesandTraits................................ 41 LeslieA.Lyons Variation in Chicken Gene Structure and Expression Associated with Food-Safety Pathogen Resistance: Integrated Approaches toSalmonellaResistance ............................................ 57 S.J.Lamont FunctionalGenomicsandBioinformaticsofthePhytophthorasojae SoybeanInteraction ................................................ 67 Brett M. Tyler, Rays H.Y. Jiang, Lecong Zhou, Sucheta Tripathy, DaolongDou, Trudy Torto-Alalibo,Hua Li, YongcaiMao, Bing Liu, MiguelVega-Sanchez,SantiagoX.Mideros,ReginaHanlon,BrianM.Smith, KonstantinosKrampis,KeyingYe,StevenSt.Martin,AnneE.Dorrance, InaHoeschele,andM.A.SaghaiMaroof ix x Contents CanineSINEsandTheirEffectsonPhenotypesoftheDomesticDog ..... 79 LeighAnneClark,JacquelynM.Wahl,ChristineA.Rees,GeorgeM.Strain, EdwardJ.Cargill,SharonL.Vanderlip,andKeithE.Murphy OvineDiseaseResistance:IntegratingComparativeandFunctional GenomicsApproachesinaGenomeInformation-PoorSpecies........... 89 H.W. Raadsma, K.J. Fullard, N.M. Kingsford, E.T. Margawati, E. Estuningsih,S. Widjayanti, Subandriyo,N. Clairoux,T.W. Spithill, andD.Piedrafita Integrating Genomics to Understand the Marek’s Disease Virus–ChickenHost–PathogenInteraction ...........................115 HansH.Cheng Combining Genomic Tools to Dissect Multifactorial Virulence inPseudomonasaeruginosa..........................................127 Daniel G. Lee, Jonathan M. Urbach, Gang Wu, Nicole T. Liberati, RhondaL.Feinbaum,andFrederickM.Ausubel Genetic Dissection of the InteractionBetween the Plant Pathogen Xanthomonascampestrispv.vesicatoriaandItsHostPlants..............151 Ulla Bonas, Doreen Gu¨rlebeck, Daniela Bu¨ttner, Monique Egler, SimoneHahn,SabineKay,AntjeKru¨ger,ChristianLorenz,RobertSzczesny, andFrankThieme Structure and Function of RXLR Effectors ofPlantPathogenicOomycetes ......................................161 William Morgan, Jorunn Bos, Catherine Bruce, Minkyoung Lee, Hsin-YenLiu,Sang-KeunOh,JingSong,JoeWin,CarolynYoung, andSophienKamoun The Biotrophic Phase of Ustilago maydis: Novel Determinants forCompatibility...................................................173 Thomas Brefort, Kerstin Schipper, Gunther Do¨hlemann, andRegineKahmann VirulenceEvolutioninMalaria ......................................183 M.J.Mackinnon TheInsandOutsofHostRecognitionofMagnaportheoryzae ...........199 SallyA.Leong Index .............................................................217 Contributors FrederickM.Ausubel DepartmentofMolecularBiology,MassachusettsGeneralHospitalandDepartment ofGenetics,HarvardMedicalSchool,Boston,MA,USA RajendraBari TheSainsburyLaboratory,JohnInnesCentre,ColneyLane,NorwichNR47UH, UK LauraE.Bartley Departmentof PlantPathology,One ShieldsAvenue,Universityof California, Davis,CA95616,USA ThomasBrefort Max Planck Institute for Terrestrial Microbiology, Department Organismic Interactions,Karl-von-Frisch-Strasse,D-35043Marburg,Germany UllaBonas Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany [email protected] JorunnBos DepartmentofPlantPathology,OhioStateUniversityOhioAgriculturalResearch andDevelopmentCenter,Wooster,OH,USA CatherineBruce DepartmentofPlantPathology,OhioStateUniversityOhioAgriculturalResearch andDevelopmentCenter,Wooster,OH,USA DanielaBu¨ttner Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany EdwardJ.Cargill CanineGeneticsLaboratory,DepartmentofPathobiology,CollegeofVeterinary Medicine,TexasA&MUniversity,CollegeStation,TX77843-4467,USA xi xii Contributors HansH.Cheng USDA,ARS,AvianDiseaseandOncologyLaboratory,3606E.MountHopeRd., EastLansing,MI48823,USA N.Clairoux CentreforHost-ParasiteInteractions,InstituteofParasitology,McGillUniversity, SteAnnedeBellevue,Quebec,Canada,H9X3V9 LeighAnneClark CanineGeneticsLaboratory,DepartmentofPathobiology,CollegeofVeterinary Medicine,TexasA&MUniversity,CollegeStation,TX77843-4467,USA AnneE.Dorrance DepartmentofPlantPathology,TheOhioStateUniversity,OARDC,1680Madison Ave.,Wooster,OH44691,USA GuntherDo¨hlemann Max Planck Institute for Terrestrial Microbiology, Department Organismic Interactions,Karl-von-Frisch-Strasse,D-35043Marburg,Germany DaolongDou Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University,Blacksburg,VA24061,USA MoniqueEgler Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany E.Estuningsih IndonesianVeterinaryScienceResearchInstitute,Bogor,WestJava,Indonesia RhondaL.Feinbaum DepartmentofMolecularBiology,MassachusettsGeneralHospitalandDepartment ofGenetics,HarvardMedicalSchool,Boston,MA,USA K.J.Fullard Reprogen-Centrefor AdvancedTechnologiesin Animal Genetics and Repro- duction,Faculty of VeterinaryScience, University of Sydney,Camden NSW, Australia DoreenGu¨rlebeck Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany Sang-WookHan Departmentof PlantPathology,One ShieldsAvenue,Universityof California, Davis,CA95616,USA SimoneHahn Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany Contributors xiii ReginaHanlon Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University,Blacksburg,VA24061,USA InaHoeschele Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University,Blacksburg,VA24061,USA RaysH.Y.Jiang Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University,Blacksburg,VA24061,USA Present address: Laboratory of Phytopathology, Wageningen University, Binnenhaven5,NL6709PDWageningen,TheNetherlands JonathanD.G.Jones TheSainsburyLaboratory,JohnInnesCentre,ColneyLane,NorwichNR47UH, UK SophienKamoun DepartmentofPlantPathology,OhioStateUniversityOhioAgriculturalResearch andDevelopmentCenter,Wooster,OH,USA [email protected] RegineKahmann Max Planck Institute for Terrestrial Microbiology, Department Organis- mic Interactions, Karl-von-Frisch-Strasse, D-35043 Marburg, Germany, [email protected] SabineKay Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany N.M.Kingsford Reprogen-Centrefor AdvancedTechnologiesin Animal Genetics and Repro- duction,Faculty of VeterinaryScience, University of Sydney,Camden NSW, Australia KonstantinosKrampis Departmentof Crop Soiland EnvironmentalScience, VirginiaBioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA24061 AntjeKru¨ger Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle, Germany
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