Genetic Programming Theory and Practice PDF
Preview Genetic Programming Theory and Practice
GENETIC PROGRAMMING THEORY AND PRACTICE GENETIC PROGRAMMING SERIES Series Editor John Koza Stanford University Also in the series: GENETIC PROGRAMMINGANDDATA STRUCTURES: Genetic Programming+DataStructures=Automatic Programming! William B. Langdon; ISBN:0-7923-8135-1 AUTOMATIC RE-ENGINEERING OF SOFTWARE USING GENETIC PROGRAMMING, ConorRyan; ISBN:0-7923-8653-1 DATA MINING USING GRAMMARBASED GENETIC PROGRAMMINGANDAPPLICATIONS, Man Leung Wong andKwong Sak Leung;ISBN:0-7923-7746-X GRAMMATICAL EVOLUTION: EvolutionaryAutomaticProgramming inan ArbitraryLanguage,Michael O'Neilland ConorRyan; ISBN: 1-4020 7444-1 GENETIC PROGRAMMING IV: Routine Human-ComputerMachine Intelligence, JohnR. Koza, Martin A. Keane, Matthew J. Streeter, William Mydlowec, Jessen Yu, Guido Lanza;ISBN 1-4020-7446-8 .The cover art was created by Leslie Sobel in Photoshop from an original photomicrograph of plant cells and genetic programming code. More of Sobel's artworkcanbeseenatwww.lesliesobel.com GENETIC PROGRAMMING THEORY AND PRACTICE edited by RickRiolo Center for the Study ofC omplex Systems University ofM ichigan Bili Worzel Genetics Squared SPRINGER SCIENCE+BUSINESS MEDIA, LLC Library of Congress Cataloging-in-Publication Data GENETIC PROGRAMMING THEORY AND PRACTICE Edited by Rick Riolo and Bill Worzel ISBN 978-1-4613-4747-7 ISBN 978-1-4419-8983-3 (eBook) DOI 10.1007/978-1-4419-8983-3 Copyright © 2003 by Springer Science+Business Media New York Originally published by Kluwer Academic Publishers in 2003 Softcover reprint ofthe hardcover Ist edition 2003 AlI rights reserved. No part of this work may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording, or otherwise, without the written permission from the Publisher, with the exception of any material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Contents ContributingAuthors ix Preface xiii Foreword xv Genetic Programming:Theoryand Practice BillWorzel,andRickRiolo 2 An Essay ConcerningHuman UnderstandingofGenetic Programming II Lee Spector 3 ClassificationofGeneExpressionData with Genetic Programming 25 Joseph A. Driscoll.BillWorzel, andDuncanMacLean 4 Artificial RegulatoryNetworksand GeneticProgramming 43 W.Banzhaf 5 UsingSoftwareEngineeringKnowledgetoDriveGeneticProgramDesign 63 Using CulturalAlgorithms DavidA.Ostrowski. andRobert G.Reynolds 6 ContinuousHierarchicalFairCompetitionModelforSustainableInnovation 81 inGeneticProgramming JianjunHu,ErikD.Goodman, andKisungSeo 7 What MakesaProblemGP-Hard? 99 Jason M. Daida VI GENETICPROGRAMMINGTHEORYANDPRACTICE 8 AProbabilisticModel ofSize Drift 119 Justinian Rosca 9 Building-BlockSupplyinGeneticProgramming 137 KumaraSastry, Una-May 0 'Reilly,DavidE.Goldberg, DavidHill 10 Modularizationby Multi-RunFrequencyDriven SubtreeEncapsulation 155 DanielHoward 11 The DistributionofReversibleFunctionsisNormal 173 W.B.Langdon 12 Doing GeneticAlgorithmsthe Genetic ProgrammingWay 189 ConorRyan andMiguelNicolau 13 ProbabilisticModel Buildingand CompetentGeneticProgramming 205 KumaraSastry,DavidE.Goldberg 14 Automated Synthesis by Means ofGenetic Programming ofComplex 221 Structures Incorporating Reuse, Parameterized Reuse, Hierarchies, and Development John R.Koza,MatthewJ.Streeter.andMartinA. Keane IS IndustrialStrengthGeneticProgramming 239 MarkKotanchek, GuidoSmits, andArthurKordon 16 OperatorChoiceand the EvolutionofRobustSolutions 257 TerenceSoule 17 AHybridGP-FuzzyApproachforResevoirCharacterization 271 TInaYu,DaveWilkinson,andDeyiXie 18 EnhancedEmergingMarketStock Selection 291 AnjunZhou Contents Vll 19 Three Fundamentalsofthe BiologicalGeneticAlgorithm 303 Stephen Freeland Index 313 ContributingAuthors Wolfgang BanzhafisAssociateProfessorofComputerScienceatthe Univer sity ofDortmund, Germany. Jason M. Daida is an Associate Research Scientist in the Space Physics Re search LaboratoryatThe UniversityofMichigan,AnnArbor. Joseph A. Driscoll is an Assistant Professor in the Department ofComputer Science at MiddleTennessee State University. Stephen Freeland isanAssistantProfessorofBioinformaticswithin the Biol ogy DepartmentofUMBC (UniversityofMaryland, BaltimoreCounty). David E.Goldberg istheJerry S.DobrovolnyDistinguishedProfessorin En trepreneurial Engineeringand DirectoroftheIllinois GeneticAlgorithmsLab oratory atthe UniversityofIllinoisatUrbana-Champaign. ErikD.Goodman isProfessorofElectrical andComputerEngineeringand of Mechanical EngineeringatMichigan State University. David Hill isagraduatestudentintheDepartmentofCiviland Environmental Engineeringat the UniversityofIllinois at Urbana-Champaign. DanielHowardisaQinetiQFellowandHeadoftheSoftware EvolutionCentre at QinetiQ in Malvern, UK. JianjunHuisaPh.DstudentinComputerScienceatMichiganStateUniversity. MartinA.KeaneisaconsultanttothegamingindustryandworkswithGenetic ProgrammingInc. x GENETICPROGRAMMINGTHEORYANDPRACTICE Mark Kotanchek is the group leader for Applied Math and Physics within Physical SciencesResearch andDevelopmentofthe Dow ChemicalCompany, Midland,MI, USA. ArthurK. KordonisaResearchandDevelopmentLeaderintheAppliedMath and PhysicsGroup within thePhysical SciencesResearchand Developmentof the Dow Chemical Company. John Koza is Consulting Professor at Stanford University in the Biomedical Informatics Program inthe DepartmentofMedicine and inthe Departmentof ElectricalEngineering. DuncanMacLeanisafounderofandChiefEngineerforGeneticsSquared,Inc, acomputational discovery companyworking inthe pharmaceutical industry. Miguel Nicolau isaresearcherandpart-timePhD studentat the Universityof Limerick,Ireland. DavidA.OstrowskiworksintheBusinessSystemsResearchgroup attheFord Research Laboratory. Dr. Ostrowski isalso an adjunct faculty memberin the Department ofComputerScience atthe UniversityofMichigan-Dearbom. Una-May0 'ReillyisaresearchmemberoftheLivingMachinesandHumanoid RoboticsgroupintheComputerScience andArtificialIntelligenceLaboratory at the MassachusettsInstitute ofTechnology. Robert G. Reynolds isaprofessorinthe DepartmentofComputerScience at Wayne State University and the director ofthe Artificial Intelligence Labora tory. He is also anAssociateAdjunct Research Scientist with the Museum of Anthropology and a faculty member ofthe Center for the Study ofComplex Systemsatthe University ofMichigan-AnnArbor. Rick Riolo is Directorofthe ComputerLab and AssociateResearch Scientist inthe Centerforthe StudyofComplex Systemsatthe UniversityofMichigan. Conor Ryan is a senior lecturer and University Fellow at the University of Limerick,Ireland. ContributingAuthors Xl Kumara Sastry is a member ofIllinois Genetic Algorithms Laboratory and a graduate student ofMaterial Science and Engineering at the University of Illinois at Urbana-Champaign. Kisung Seo isVisitingAssistantProfessorofECEatMichigan StateUniversity and alsoAssistant ProfessorofEE atSeokyoungUniversity inSeoul. Guido Smits is aResearch and DevelopmentLeaderintheApplied Math and Physics group within Physical Sciences Research and Development ofDow Benelux,Terneuzen,NV. TerenceSouleisaProfessoratthe UniversityofIdaho,whereisamemberofthe Computer Science Department and ofthe Bioinformatics and Computational BiologyProgram. LeeSpectorisDeanoftheSchoolofCognitiveScienceandAssociateProfessor ofComputerScienceat HampshireCollege inAmherst, Massachusetts. MatthewStreeterisaSystemsandResearchProgrammeratGeneticProgram ming, Inc. inMountainView,California. DaveWilkinson isageophysicistintheSeismic Analysis and ReservoirProp erty EstimationTeam at ChevronTexaco Explorationand ProductionTechnol ogy Company. Bill Worzel is the President and co-founderofGenetics Squared, Inc,a com putational discovery companyworkinginthe pharmaceutical industry. Deyi Xieisageologistinthe SeismicAnalysis and Reservoir PropertyEstima tionTeamatChevronTexacoExplorationandProductionTechnologyCompany. TinaYuisacomputerscientistintheMathematicalModelingTeamatChevron Texaco InformationTechnologyCompany. Anjun Zhou is a principal ofthe Advanced Research Center at State Street Global Advisors.
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