Genetic Disorders and the Fetus Genetic Disorders and the Fetus: Diagnosis, Prevention and Treatment Sixth Edition Edited by Aubrey Milunsky and Jeff M. Milunsky © 2010 Aubrey Milunsky and Jeff Milunsky. ISBN: 978-1-405-19087-9 Dedicated to Laura and Kiran For their love, support and understanding and to our grandchildren and children, Julie, Miranda, and Cody, who endow life with joy and meaning “ Make assurance double sure. ” Shakespeare, MacBeth Genetic Disorders and the Fetus Diagnosis, Prevention and Treatment EDITED BY Aubrey Milunsky MB BCh, DSc, FRCP, FACMG, DCH Professor of Human Genetics, Pediatrics, Pathology, and Obstetrics and Gynecology, Co-Director, Center for Human Genetics Boston University School of Medicine and Boston Medical Center Boston, MA, USA Jeff M. Milunsky MD, FACMG Professor of Pediatrics and Genetics and Genomics Co-Director, Center for Human Genetics Director, Clinical Genetics Boston University School of Medicine and Boston Medical Center Boston, MA, USA SIXTH EDITION A John Wiley & Sons, Ltd., Publication This edition fi rst published 2010, © 2010 by Aubrey Milunsky and Jeff Milunsky Previous editions: 1979, 1986, 1992, 1998, 2004 © Aubrey Milunsky Blackwell Publishing was acquired by John Wiley & Sons in February 2007. Blackwell’s publishing program has been merged with Wiley’s global Scientifi c, Technical and Medical business to form Wiley-Blackwell. Registered offi ce: John Wiley & Sons Ltd, The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK Editorial offi ces: 9600 Garsington Road, Oxford, OX4 2DQ, UK The Atrium, Southern Gate, Chichester, West Sussex, PO19 8SQ, UK 111 River Street, Hoboken, NJ 07030-5774, USA For details of our global editorial offi ces, for customer services and for information about how to apply for permission to reuse the copyright material in this book please see our website at www.wiley.com/wiley-blackwell The right of the author to be identifi ed as the author of this work has been asserted in accordance with the Copyright, Designs and Patents Act 1988. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by the UK Copyright, Designs and Patents Act 1988, without the prior permission of the publisher. Wiley also publishes its books in a variety of electronic formats. Some content that appears in print may not be available in electronic books. Designations used by companies to distinguish their products are often claimed as trademarks. All brand names and product names used in this book are trade names, service marks, trademarks or registered trademarks of their respective owners. The publisher is not associated with any product or vendor mentioned in this book. This publication is designed to provide accurate and authoritative information in regard to the subject matter covered. It is sold on the understanding that the publisher is not engaged in rendering professional services. If professional advice or other expert assistance is required, the services of a competent professional should be sought. The contents of this work are intended to further general scientifi c research, understanding, and discussion only and are not intended and should not be relied upon as recommending or promoting a specifi c method, diagnosis, or treatment by physicians for any particular patient. The publisher and the author make no representations or warranties with respect to the accuracy or completeness of the contents of this work and specifi cally disclaim all warranties, including without limitation any implied warranties of fi tness for a particular purpose. In view of ongoing research, equipment modifi cations, changes in governmental regulations, and the constant fl ow of information relating to the use of medicines, equipment, and devices, the reader is urged to review and evaluate the information provided in the package insert or instructions for each medicine, equipment, or device for, among other things, any changes in the instructions or indication of usage and for added warnings and precautions. Readers should consult with a specialist where appropriate. The fact that an organization or Website is referred to in this work as a citation and/or a potential source of further information does not mean that the author or the publisher endorses the information the organization or Website may provide or recommendations it may make. Further, readers should be aware that Internet Websites listed in this work may have changed or disappeared between when this work was written and when it is read. No warranty may be created or extended by any promotional statements for this work. Neither the publisher nor the author shall be liable for any damages arising herefrom. ISBN: 978-1-4051-9087-9 A catalogue record for this book is available from the British Library. Set in 9.5/12pt Minion by SNP Best-set Typesetter Ltd., Hong Kong Printed in Singapore 1 2010 Contents Preface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . vii Acknowledgments . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix List of Contributors . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . x 1 Genetic Counseling: Preconception, Prenatal and Perinatal . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 Aubrey Milunsky and Jeff M. Milunsky 2 Amniocentesis and Fetal Blood Sampling . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 63 Sherman Elias 3 Amniotic Fluid . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 94 Aubrey Milunsky 4 Amniotic Fluid Cell Culture . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 138 Daniel L. van Dyke 5 Prenatal Genetic Diagnosis through Chorionic Villus Sampling . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 160 Giovanni Monni, Rosa Maria Ibba and Maria Angelica Zoppi 6 Prenatal Diagnosis of Chromosomal Abnormalities through Amniocentesis . . . . . . . . . . . . . . . . . . . . . 194 Peter A. Benn 7 Prenatal Diagnosis of Sex Chromosome Abnormalities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 273 Jeff M. Milunsky 8 Molecular Cytogenetics and Prenatal Diagnosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 313 Stuart Schwartz 9 Prenatal Diagnosis and the Spectrum of Involvement from Fragile X Mutations . . . . . . . . . . . . . . . . . . 349 Randi Hagerman, Vivien Narcisa and Paul Hagerman 10 Prenatal Diagnosis by Microarray Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 365 Joris Robert Vermeesch 11 Molecular Genetics and Prenatal Diagnosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 380 John A. Phillips III 12 Prenatal Diagnosis of Disorders of Lipid Metabolism . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 445 Bryan G. Winchester 13 Prenatal Diagnosis of the Peroxisomal and Mitochondrial Fatty Acid Oxidation Defi ciencies . . . . . . . 489 Ronald J.A. Wanders 14 Prenatal Diagnosis of the Mucopolysaccharidoses and Postnatal Enzyme Replacement Therapy . . . . . 495 John J. Hopwood 15 Disorders of the Metabolism of Amino Acids and Related Compounds . . . . . . . . . . . . . . . . . . . . . . . . . . 514 Vivian E. Shih and Roseann Mandell 16 Prenatal Diagnosis of Disorders of Carbohydrate Metabolism . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 554 Yuan-Tsong Chen and Deeksha S. Bali 17 Prenatal Diagnosis of Cystic Fibrosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 577 Gerald L. Feldman and Kristin G. Monaghan v vi Contents 18 Prenatal Diagnosis and Treatment of Congenital Adrenal Hyperplasia . . . . . . . . . . . . . . . . . . . . . . . . . . . 600 Phyllis W. Speiser 19 Prenatal Diagnosis of Miscellaneous Biochemical Disorders . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 614 David S. Rosenblatt and David Watkins 20 Prenatal Diagnosis of Primary Immunodefi ciency Diseases . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 628 Jennifer M. Puck 21 Prenatal Diagnosis of the Hemoglobinopathies . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 646 John M. Old 22 Prenatal Diagnosis of Disorders of Bone and Connective Tissue . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 680 Andrea Superti-Furga and Sheila Unger 23 Maternal Serum Screening for Neural Tube and Other Defects . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 705 Aubrey Milunsky and Jacob A. Canick 24 Multi-Marker Maternal Serum Screening for Chromosomal Abnormalities . . . . . . . . . . . . . . . . . . . . . . 771 Howard S. Cuckle and Peter A. Benn 25 Prenatal Diagnosis of Fetal Malformations by Ultrasound . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 819 Yves G. Ville and Durata Nowakowska 26 Prenatal Diagnosis and Management of Abnormal Fetal Development with Emphasis on the Third Trimester of Pregnancy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 882 Juriy W. Wladimiroff and Titia E. Cohen-Overbeek 27 Prenatal Diagnosis by Fetal Magnetic Resonance Imaging . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 911 Nadine Girard and Kathia Chaumoitre 28 Induced Abortion for Genetic Indications: Techniques and Complications . . . . . . . . . . . . . . . . . . . . . . . 929 Lee P. Shulman 29 Preimplantation Genetic Diagnosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 950 Yury Verlinsky* and Anver Kuliev 30 Prenatal Diagnosis through Analysis of Intact Fetal Cells and Cell-Free Nucleic Acids in the Maternal Circulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 978 Diana W. Bianchi and Y.M. Dennis Lo 31 Fetal Therapy . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1001 Diana L. Farmer, Hammin Lee, Elizabeth Gress, Aubrey Milunsky and Michael R. Harrison 32 Prenatal Diagnosis of Fetal Infection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1020 Yves Ville and Guillaume Benoist 33 Medicolegal Aspects of Prenatal Diagnosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1053 Ellen Wright Clayton and Mary Z. Pelias 34 Prenatal and Preimplantation Diagnosis: International Policy Perspectives . . . . . . . . . . . . . . . . . . . . . . 1081 Bartha Maria Knoppers and Thu Minh Nguyen 35 Ethical Issues in the Diagnosis and Management of Genetic Disorders in the Fetus . . . . . . . . . . . . . . 1097 Frank A. Chervenak and Laurence B. McCullough Appendix, Prenatal Diagnosis of Additional Miscellaneous Genetic Disorders . . . . . . . . . . . . . . . . . . . . . . . 1122 Aubrey Milunsky Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1136 Color plate appears facing page 948 * Deceased. Preface In the search for accurate and reliable information, about application of this new technology, which a discerning reader would welcome a source that is constantly being refi ned, to preimplantation reliably dispenses evidence - based facts embellished genetic diagnosis (PGD). The second addition is by knowledge, experience and wisdom. This the chapter that is focused on the social, legal and precious distillate, tinctured with recommenda- public policy issues with special reference to inter- tions and guidance born of long experience, is not national approaches to prenatal diagnosis. The reachable by the most avid electronic voyeur. third addition expands previous coverage of the Sifting through mountains of unfi ltered, irrelevant, important peroxisomal and related fatty acid oxi- unreliable or misleading information, electronic dation disorders. searches simply spawn reams of paper, mostly The fundamental pillars of this sixth (and lacking critical analysis of the subject in question. earlier) edition(s) are represented by the other 32 At best, authors will describe “ limitations ” in their chapters which are replete with the factual basis of studies, while awaiting guidance from their clinical prenatal diagnosis, synthesis, critical analysis and Colleges or Societies, which often takes years. guidelines. In the opening chapter, the principles Fortunately this volume, a major repository of and practice that underscore preconception, pre- facts about prenatal diagnosis, provides a critical natal and perinatal genetic counseling is presented analysis and synthesis of established and new in detail with emphasis on lessons learned since the knowledge based on the long experience of author- inception of prenatal genetic diagnosis. An enor- ities in their respective fi elds. The guidance pro- mous factual base is provided in a chapter on vided and the insights and perspectives of these amniotic fl uid function and constituents including authors make this volume a valuable and indispen- pesticides, carcinogens and other environmental sable resource for all whose focus is securing fetal contaminants, while the essentials of cell culture health through prenatal diagnosis. for prenatal diagnosis are provided in another. A broad international perspective is presented Chapters on amniocentesis and fetal blood sam- in this volume with authoritative contributions pling, and chorion villus sampling are anchored by from authors in nine countries. All chapters have authors with a lifetime of experience. Prenatal been revised and updated, new guidelines empha- chromosome diagnosis, the bedrock upon which sized, and three new important chapters added. this subject was built, is again captured in an The fi rst addition is the use of chromosomal authoritative extensive chapter that is pertinent to microarrays in prenatal diagnosis. Clinical trials, all engaged in prenatal diagnosis, and enhanced by now underway, will help determine the frequency a separate chapter on molecular cytogenetics and of detecting a microdeletion/duplication of clinical the use of fl uorescent in situ hybridization. signifi cance which would have otherwise been Clear guidance is provided for the genetic coun- missed by routine cytogenetics. At the same time, seling and management following the frequently a clear measure should emerge of how often copy incidental prenatal diagnosis of a sex chromosome number variations of uncertain signifi cance are disorder, while the Fragile X syndrome is exten- determined and how often they are deemed “ prob- sively addressed by pioneers. Recent and continu- ably benign ” . Compounding the normal anxiety ing advances in molecular genetics now command expectant mothers experience during prenatal a central role in prenatal diagnosis refl ected by the diagnosis with signifi cant degrees of uncertainty many serious monogenic disorders amenable to will not only be unhelpful, but may cause harm if early detection. Comprehensive, authoritative unnecessary pregnancy termination is pursued. and important chapters on biochemical genetics Major reservation is expressed in this chapter encompass much that is known about the prenatal vii viii Preface diagnosis of the lipid storage disorders, the muco- sequencing of fetal DNA, are described and assessed polysaccharidoses, the organic and amino acid and in a re - written expert chapter. related disorders of metabolism, the disorders of Advances in fetal therapy, either directly or carbohydrate metabolism, the peroxisomal and via the maternal circulation, have continued and related fatty acid oxidation disorders and the dis- require attention given opportunities to intervene, orders of folate and cobalamin metabolism. especially where surgical or medical treatment can Revised and updated chapters on cystic fi brosis, save the fetus, as described in two re - written and congenital adrenal hyperplasia and the primary revised chapters. Cogent issues of law, ethics and immunodefi ciency disorders are followed by a public policy as they apply to prenatal diagnosis are masterly discourse on the hemoglobinopathies. explored in depth by acknowledged experts in the New advances combining molecular genetics and three last chapters. Greater public awareness of fetal imaging provide valuable information in the genetics has alerted many to the opportunities of re - written chapter on connective tissue disorders. preventing adverse outcomes in pregnancy. One An extremely thorough exposition of maternal consequence has been escalating litigation by those serum screening for neural tube defects, Down deprived of the chance to avoid harm, which is also syndrome and chromosome abnormalities, occu- discussed in the fi rst chapter. pies two chapters refl ecting current practice. Bio- This reference text, with contributions uniquely chemical screening for neural tube defects heralded fi rst authored by senior professors and directors, previously as one of the most important advances is a veritable repository of information on prenatal in prenatal diagnosis, may well be largely replaced genetic diagnosis, is very heavily referenced, full of soon by ultrasonography once the technical skills guidance and refl ective of the lifetime experience have been universally mastered. and wisdom of the authors. This addition encom- Sophisticated ultrasonic imaging for fetal struc- passes 162 tables, 129 fi gures, including 14 color tural and functional abnormalities are superbly plates, and nearly 9000 references. An extensive table covered in two updated chapters, while the growing of additional disorders amenable to prenatal diag- importance of fetal magnetic resonance imaging in nosis is added as an appendix. A valuable index will resolving diffi cult diagnostic quandaries is expertly enrich the reader ’ s search for specifi c information. covered in a re - written chapter. Exciting progress marks the 45 th year since the Any attempt at prenatal diagnosis must be pre- introduction of prenatal cytogenetic diagnosis ceded by counseling at which time the provider by amniocentesis and cell culture. Major recent must be fully informed about the details if induced advances include signifi cant progress in the devel- abortion will need to be considered. An updated opment of chromosomal microarrays, gene dis- expert revision of a chapter on the subject provides covery and fast next - generation gene sequencing, the necessary facts and guidance to be shared with a fetal imaging, non - invasive prenatal diagnosis and patient. Avoidance of abortion is facilitated by pre- preimplantation genetic diagnosis. We hope that implantation genetic diagnosis (PGD) which is fully this edition will once again provide evidence - based updated in a revised chapter detailing a remarkable guidance, insight and perspective, combined with array of achieved diagnoses. Screening for aneu- an enormous factual base. Recognition of many ploidy prior to implantation seems common sense, new and unresolved challenges should provide but uniform supportive data are lacking, some con- inspiration for novel research initiatives. Mostly cluding that randomized controlled trials are however we hope that the progress mirrored in this needed, while others maintain that suffi cient data volume and the anticipated progress will help reas- exists to indicate an unfavor able practice. Clearly, sure many parents at risk that they can avoid either more defi nitive research is required. conceiving offspring with serious/lethal genetic Among the most anticipated and exciting disorders or having affected offspring that could developments is non - invasive prenatal diagnosis have been detected prenatally. by analysis of fetal DNA and RNA in the mater- nal circulation. The technological innovations, Aubrey Milunsky and Jeff M. Milunsky now developing rapidly and including shot - gun Boston Acknowledgments Only rarely does one encounter a major reference which fetal and maternal health and welfare are text in which every chapter is written by an paramount will be the benefi ciaries of the informa- acknowledged authority or internationally recog- tion and guidance proffered. We are extremely nized expert. Such is the nature of this sixth edition grateful to all our authors for their superb in which outstanding physicians, scientists and contributions. academicians have again considered it worthy to We are also most grateful to my senior executive have taken the time to share their expertise, experi- secretary, Mrs. Marilyn McPhail, who yet again ence, and wisdom. Readers in many disciplines in effectively demonstrated the art of multi - tasking. ix List of Contributors Deeksha S. Bali, PhD, FACMG Ellen Wright Clayton, MD, JD Assistant Professor and Laboratory Director Pediatrics, Rosalind E. Franklin Professor of Genetics and Health Division of Medical Genetics, Duke University Medical Policy, Director, Center for Biomedical Ethics and Society; Center, Durham, NC, USA Professor of Pediatrics; Professor of Law; Vanderbilt University, Nashville, TN, USA Peter A. Benn, MSc, PhD, FACMG, DSc Professor, Departments of Genetics and Developmental Titia E. Cohen- Overbeek, MD, PhD Biology, Pediatrics, and Laboratory Medicine; and Senior Physician Prenatal Medicine, Erasmus University Director, Human Genetics Laboratories, University of Medical Center, Department of Obstetrics and Connecticut Health Center, Farmington, CT, USA Gynecology, Rotterdam, the Netherlands Guillaume Benoist, MD Howard S. Cuckle, MSc, DPhil Department of Obstetrics and Gynecology, Centre Adjunct Professor, Obstetrics and Gynecology, Colombia Hospitalier Intercommunal de Poissy - St. Germain en University, New York, NY, USA and Emeritus Professor, Laye, Poissy, France Reproductive Epidemiology, University of Leeds, Leeds, UK Diana W. Bianchi, MD Sherman Elias, MD, FACOG, FACMG, Natalie V. Zucker Professor of Pediatrics, Obstetrics and FACS Gynecology and Vice - Chair for Research and Academic John J. Sciarra Professor and Chair, Department of Affairs, Department of Pediatrics, Tufts University Obstetrics and Gynecology, Feinberg School of Medicine, School of Medicine; Tufts Medical Center, Boston, MA, Northwestern University, and Prentice Women ’ s Hospital, USA Chicago, IL, USA Jacob A. Canick, PhD, FACB Diana L. Farmer, MD Professor, Department of Pathology and Laboratory Professor of Surgery, Pediatrics, and Obstetrics, Medicine, The Warren Alpert Medical School of Brown Gynecology and Reproductive Sciences; Chief, Division University; and Director, Division of Prenatal and Special of Pediatric Surgery, and Vice Chair, Department of Testing, Women and Infants Hospital, Providence, RI, Surgery, University of California, San Francisco and USA Surgeon - in - Chief, UCSF Children ’ s Hospital, San Francisco, CA, USA Yuan - Tsong Chen, MD, PhD Professor of Pediatrics and Genetics, Duke University Gerald L. Feldman, MD, PhD Medical Center, Durham, NC, USA and Institute of Professor, Center for Molecular Medicine and Genetics, Biomedical Sciences, Academia Sinica, Taiwan and Departments of Pediatrics and Pathology, Wayne State University School of Medicine; Director, Clinical Genetics Frank A. Chervenak, MD Services, and Director, Molecular Genetics Diagnostic Given Foundation Professor and Chair, Department of Laboratory, Detroit Medical Center - University Obstetrics and Gynecology and Gynecologist - in - Chief, Laboratories, Detroit, MI, USA New York - Presbyterian Hospital and Weill Medical College of Cornell University, New York, NY, USA Nadine Girard, MD, PhD Professor of Neuroradiology, Centre de Resonance Kathia Chaumoitre, MD, PhD Magnetique Biologique et Medicale,, Centre National Laboratorire d ’ anthropologie, Faculte de Medicine de la Recherche Scientifi que, Faculte de Medicine la Marseille, Universite de la Mediterranee, France and Timone, Marseille, France, Universite de la Mediterranee, Department of Radiology, Hopital Nord, Marseille, and Head of Neuroradiology, Timone Hospital, Marseille, France France x