Gene Delivery Systems DRUGS AND THE PHARMACEUTICAL SCIENCES A Series of Textbooks and Monographs Series Editor Anthony J. Hickey RTI International, Research Triangle Park, USA The Drugs and Pharmaceutical Sciences series is designed to enable the pharmaceutical scientist to stay abreast of the changing trends, advances and innovations associated with therapeutic drugs and that area of expertise and interest that has come to be known as the pharmaceutical sciences. The body of knowledge that those working in the pharmaceutical environment have to work with, and master, has been, and continues, to expand at a rapid pace as new scientific approaches, technologies, instrumentations, clinical advances, economic factors and social needs arise and influence the discovery, development, manufacture, commercialization and clinical use of new agents and devices. Recent Titles in Series Gene Delivery Systems Yashwant V. Pathak Percutaneous Absorption: Drugs, Cosmetics, Mechanisms, Methods Nina Dragićević and Howard Maibach Handbook of Pharmaceutical Granulation Technology Dilip M. Parikh Biotechnology: the Science, the Products, the Government, the Business Ronald P. Evens Filtration and Purification in the Biopharmaceutical Industry, Third Edition Maik W. Jornitz Handbook of Drug Metabolism, Third Edition Paul G. Pearson and Larry Wienkers The Art and Science of Dermal Formulation Development Marc Brown and Adrian C. Williams Pharmaceutical Inhalation Aerosol Technology, Third Edition Anthony J. Hickey and Sandro R. da Rocha Good Manufacturing Practices for Pharmaceuticals, Seventh Edition Graham P. Bunn Pharmaceutical Extrusion Technology, Second Edition Isaac Ghebre- Sellassie, Charles E. Martin, Feng Zhang, and James Dinunzio For more information about this series, please visit: www.crcpress.com/Drugs- and- the- Pharmaceutical- Sciences/book- series/IHCDRUPHASCI Gene Delivery Systems Development and Applications Edited by Yashwant V. Pathak First edition published 2022 by CRC Press 6000 Broken Sound Parkway NW, Suite 300, Boca Raton, FL 33487–2742 and by CRC Press 2 Park Square, Milton Park, Abingdon, Oxon, OX14 4RN CRC Press is an imprint of Taylor & Francis Group, LLC © 2022 selection and editorial matter, Yashwant V. Pathak; individual chapters, the contributors Reasonable efforts have been made to publish reliable data and information, but the author and publisher cannot assume responsibility for the validity of all materials or the consequences of their use. 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For works that are not available on CCC please contact [email protected] Trademark notice: Product or corporate names may be trademarks or registered trademarks and are used only for identification and explanation without intent to infringe. Library of Congress Cataloging-in-Publication Data [Insert LoC Data here when available] ISBN: 978- 1- 032- 02550- 6 (hbk) ISBN: 978- 1- 032- 02972- 6 (pbk) ISBN: 978- 1- 003- 18606- 9 (ebk) DOI: 10.1201/9781003186069 Typeset in Times LT Std by Apex CoVantage, LLC To the loving memories of my parents and Dr. Keshav Baliram Hedgewar, who gave proper direction to my life; to my beloved wife Seema, who gave positive meaning; and to my son Sarvadaman, who gave a golden lining to my life. I would like to dedicate this book to the loving memories of Ma Chamanlaljee, Ma Lakshmanraojee Bhide and Ma Madhujee Limaye, who mentored me selflessly and helped me to become a good and socially useful human being. Yashwant V. Pathak Contents Preface.......................................................................................................................ix About the Editor ........................................................................................................xi List of Contributors .................................................................................................xiii Chapter 1 Overview of Development of Gene Therapy ........................................1 Ofosua Adi- Dako, Doris Kumadoh, Yashwant V. Pathak and Nana Kwame Gyamerah Chapter 2 Understanding the Technologies Involved in Gene Therapy ..................................................................................21 Manish P. Patel, Jayvadan K. Patel, Mukesh Patel and Govind Vyas Chapter 3 Gene Therapy and Gene Correction: Target, Progress and Challenges to Treat Human Diseases ..................................................37 Manish P. Patel, Sagar A. Popat and Jayvadan K. Patel Chapter 4 Clinical Applications of siRNA .........................................................65 Seth Kwabena Amponsah, Ismaila Adams and Kwasi Agyei Bugyei Chapter 5 Human Genomics Projects, Gene Therapy and Precision Medicine .............................................................................77 Sakshi Thassu and Yashwant V. Pathak Chapter 6 The Current State of Non- Viral Vector–Based mRNA Medicine Using Various Nanotechnology Applications ....................89 Kshama Patel, Preetam Dasika and Yashwant V. Pathak Chapter 7 RNA- Based Vaccines for Infectious Disease ....................................105 Deepa Dehari, Aiswarya Chaudhuri, Sanjay Singh, and Ashish Kumar Agrawal Chapter 8 Conditional Replication of Oncolytic Virus Based on Detection of Oncogenic mRNA ...................................................129 Rakesh Sharma, Arvind Trivedi and Robert Moffatt vii viii Contents Chapter 9 Unilateral Ex Vivo Gene Therapy by GDNF in Neurodegenerative Diseases ..............................................................155 Sonia Barua and Yashwant V. Pathak Chapter 10 Gene Therapy for Cancer Treatment: Recent Trends and Clinical Evidence .......................................................................163 Manish P. Patel, Mansi S. Shah, Mansi N. Athalye and Jayvadan K. Patel Chapter 11 Gene Therapy for Retina and Eye Diseases ......................................181 Khushboo Faldu and Jigna Shah Chapter 12 COVID- 19 Vaccine Development and Applications .........................197 Kavita Trimal and Kalpana Joshi Chapter 13 In Vivo Gene Therapy: AAV2 Vectors ............................................223 Vandit Shah and Jigna Shah Chapter 14 Gene Therapy for Acquired Tissue Damage: Scope, Quality, Non- Clinical and Clinical Guidelines of Gene Therapy Medical Products .................................................243 Rakesh Sharma, Robert Moffatt, Yuvraj Singh Negi and Shashi Prabha Singh Chapter 15 iMRI for Clinical Gene Therapy ......................................................285 Disha Patel, Khushboo Faldu and Jigna Shah Index .......................................................................................................................295 Preface Human gene therapy was in a conceptual stage in the 20th century, but come the 21st century, it has become a reality. The recombinant adeno- associated virus (rAAV) has become a major gene therapy vector and spawned a multibillion dollar industry. With the advent of the COVID- 19 pandemic in the last two years, gene therapy has become a great tool to treat new virus infections. Most of the COVID- 19 virus vaccines are using messenger RNA (mRNA) technology as a treatment tool. The possibilities of rAAV gene therapy are continuing to grow. In addition, advances in structural biology provide easier access to the molecular details respon- sible for cell entry and escape from neutralizing antibodies. This is helping investiga- tors design increasingly sophisticated capsid modification schemes to improve rAAV vector properties. Newer challenges are forthcoming in developing drug delivery systems to deliver various gene- based treatment, including mRNA, small interfer- ing RNA (siRNA) and other gene therapies for treatment of various diseases. These treatments are providing incredible solutions, especially for the treatment of chronic diseases, including cancers and infectious diseases. There is a lot to be understood about the key molecular interactions of capsids with host factors, and one would anticipate continuing feedback into vector design over the coming years. There are also areas in which the salient molecular interactions remain largely uncharacterized, such as cellular immune responses, and so prog- ress in vector delivery now involves empirical mitigation strategies. It is important to emphasize that identification of the most critical host factors for entry is recent, their characterization is ongoing and exploitation of the emerging understanding for improved vector delivery is only just starting. In the recent pandemic, two companies used gene- based mRNA technology to develop a vaccine for COVID- 19 and successfully administered millions of doses around the world. Using mRNA as a medicine is a fundamentally different approach than treating diseases with other drug classes. mRNA plays a fundamental role in human biology. It is the set of instructions by which cells make proteins and send them to various parts of the body. mRNA medicines take advantage of normal bio- logical processes to express proteins and create a desired therapeutic effect. This enables the potential treatment of a broad spectrum of diseases, many of which cannot be addressed with current technologies. Seven scientists in the United States and Britain who have come up with a revolu- tionary gene therapy cure for a rare genetic form of childhood blindness won a 1 mil- lion euro ($1.15 million) prize in 2018 from Portugal’s Champalimaud Foundation. Their gene augmentation therapy involved the delivery of healthy genes using engi- neered harmless viruses, described by the foundation as “an elegant solution.” A significant boost to gene therapy research was given in 2020 with the Nobel Prize in Chemistry given to Emmanuelle Charpentier of the Max Planck Unit for the Science of Pathogens and Jennifer Doudna of the University of California, Berkeley, for their discovery of the CRISPR/Cas9 genetic scissors that have revolutionized genome editing. ix