Evolutionary Causation Vienna Series in Theoretical Biology Gerd B. Müller, editor- in- chief Johannes Jäger, Thomas Pradeu, Katrin Schäfer, associate editors The Evolution of Cognition, edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form, edited by Gerd B. Müller and Stuart A. Newman, 2003 Environment, Development, and Evolution, edited by Brian K. Hall, Roy D. Pearson, and Gerd B. Müller, 2004 Evolution of Communication Systems, edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natur al Complex Systems, edited by Werner Callebaut and Diego Rasskin-G utman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution, by Richard A. Watson, 2006 Biological Emergences: Evolution by Natur al Experiment, by Robert G. B. Reid, 2007 Modeling Biology: Structure, Beh av iors, Evolution, edited by Manfred D. Laubichler and Gerd B. Müller, 2007 Evolution of Communicative Flexibility, edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artificial Worlds, edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology, edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems, edited by Michael J. O’Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited, edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism, edited by Snait B. Gissis and Eva Jablonka, 2011 Convergent Evolution: Limited Forms Most Beautiful, by George McGhee, 2011 From Groups to Individuals, edited by Frédéric Bouchard and Philippe Huneman, 2013 Developing Scaffolds in Evolution, Culture, and Cognition, edited by Linnda R. Caporael, James Griesemer, and William C. Wimsatt, 2014 Multicellularity: Origins and Evolution, edited by Karl J. Niklas and Stuart A. Newman, 2015 Vivarium: Experimental, Quantitative, and Theoretical Biology at Vienna’s Biologische Versuchsanstalt, edited by Gerd B. Müller, 2017 Landscapes of Collectivity in the Life Sciences, edited by Snait B. Gissis, Ehud Lamm, and Ayelet Shavit, 2017 Rethinking Human Evolution, edited by Jeffrey H. Schwartz, 2017 Evolutionary Causation Biological and Philosophical Reflections Edited by Tobias Uller and Kevin N. Laland The MIT Press Cambridge, Mas sa chu setts London, England © 2019 Mas sa chu setts Institute of Technology All rights reserved. No part of this book may be reproduced in any form by any electronic or mechanical means (including photocopying, recording, or information storage and retrieval) without permission in writing from the publisher. This book was set in Times Roman by Westchester Publishing Ser vices. Printed and bound in the United States of Amer i ca. Library of Congress Cataloging-in-Publication Data Names: Uller, Tobias, editor. | Laland, Kevin N., editor. Title: Evolutionary causation : biological and philosophical reflections / edited by Tobias Uller and Kevin N. Laland. Description: Cambridge, MA : The MIT Press, [2019] | Series: Vienna series in theoretical biology | Includes bibliographical references and index. Identifiers: LCCN 2018042611 | ISBN 9780262039925 (hardcover : alk. paper) Subjects: LCSH: Evolution (Biology)—Philosophy. | Causation. Classification: LCC QH360.5 .E9596 2019 | DDC 576.8—dc23 LC record available at https://lccn.loc.gov/2018042611 10 9 8 7 6 5 4 3 2 1 Contents Series Foreword vii 1 Evolutionary Causation 1 Tobias Uller and Kevin N. Laland 2 Causality and the Role of Philosophy of Science 13 Massimo Pigliucci 3 Understanding Bias in the Introduction of Variation as an Evolutionary Cause 29 Arlin Stoltzfus 4 The Shape of Things to Come: Evo Devo Perspectives on Causes and Consequences in Evolution 63 Armin P. Moczek 5 Incorporating the Environmentally Sensitive Phenotype into Evolutionary Thinking 81 David I. Dayan, Melissa A. Graham, John A. Baker, and Susan A. Foster 6 Genotype- Environment Interaction and the Unscripted Reaction Norm 109 Sonia E. Sultan 7 Understanding Niche Construction as an Evolutionary Pro cess 127 Kevin N. Laland, John Odling-S mee, and Marcus W. Feldman 8 Biological Dynamics and Evolutionary Causation 153 Renée A. Duckworth 9 The Causes of a Major Transition: How Social Insects Traverse Darwinian Space 173 Heikki Helanterä and Tobias Uller vi Contents 10 Are Developmental Plasticity, Niche Construction, and Extended Inheritance Necessary for Evolution by Natu ral Se lection? The Role of Active Phenotypes in the Minimal Criteria for Darwinian Individuality 197 Richard A. Watson and Christoph Thies 11 The Paradox of Population Thinking: First Order C auses and Higher Order Effects 227 Denis M. Walsh 12 Ontology, Causality, and Methodology of Evolutionary Research Programs 247 Jun Otsuka 13 A Darwinian Dream: On Time, Levels, and Proc esses in Evolution 265 Arnaud Pocheville 14 Decoupling, Commingling, and the Evolutionary Significance of Experiential Niche Construction 299 Lynn Chiu 15 Biological Information in Developmental and Evolutionary Systems 323 Karola Stotz Contributors 345 Index 347 Series Foreword Biology is a leading science in this c entury. As in all other sciences, prog ress in biology depends on the interrelations between empirical research, theory building, modeling, and societal context. But whereas molecular and experimental biology have evolved dramati- cally in recent years, generating a flood of highly detailed data, the integration of t hese results into useful theoretical frameworks has lagged behind. Driven largely by pragmatic and technical considerations, research in biology continues to be less guided by theory than it may seem. By promoting the formulation and discussion of new theoretical concepts in the biosci- ences, this series intends to help fill import ant gaps in our understanding of some of the major open questions of biology, such as the origin and organi zation of organismal form, the relationship between development and evolution, and the biological bases of cognition and mind. Theoretical biology has import ant roots in the experimental tradition of early twentieth-c entury Vienna. Paul Weiss and Ludwig von Bertalanffy were among the first to use the term theoretical biology in its modern sense. In their understanding, the subject was not limited to mathematical formalization, as is often the case today, but extended to the conceptual foundations of biology. It is this commitment to a comprehensive and cross- disciplinary integration of theoretical concepts that the Vienna Series intends to emphasize. Today, theoretical biology has gen e tic, developmental, and evolutionary components, the central connective themes in modern biology, but it also includes relevant aspects of computational or systems biology and extends to the naturalistic philosophy of sciences. The Vienna Series grew out of theory-o riented workshops or ga nized by the KLI, an international institute for the advanced study of natur al complex systems. The KLI fosters research proje cts, workshops, book proj ects, and the journal Biological Theory, all devoted to aspects of theoretical biology, with an emphasis on—b ut not restriction to— integrating the developmental, evolutionary, and cognitive sciences. The series editors welcome sug- gestions for book proj ects in these domains. Gerd B. Müller, Johannes Jäger, Thomas Pradeu, Katrin Schäfer 1 Evolutionary Causation Tobias Uller and Kevin N. Laland Introduction Scientific inference typically relies on establishing causation. This is also the case in evolutionary biology, a discipline charged with providing historical accounts of the proper- ties of living beings, as well as an understanding of the proc esses that explain the origin of those properties. Familiar phenomena that demand an evolutionary explanation include the fit of form and function (adaptation) and the evolution of reproductive isolation (speciation), but also many o thers, including the origin of novelty and the organi zation of biological systems, including genomes and ecosystems. As expected from this diversity of topics, the study of evolution is a quite loosely or ga nized endeavor. Nevertheless, there is broad agreement that an explanation for why organisms have part ic u lar features com- monly will involve a part ic u lar kind of evolutionary proc ess, namely evolution by natur al se lection. While the basic princip les of evolution by natur al se lection are s imple— variation among individuals, differences in survival and reproduction, and heredity—t he biological reali ty that instantiates these princip les is incredibly complex. Furthermore, evolutionary pro- cesses encompass causation at dif fer ent levels of biological organi zation, from genes to ecosystems, and at dif fer ent timescales. This complexity makes it necessary to find means to represent biological systems in ways that leave out almost all causal detail, while ensur- ing that models, observations, and experiments carry explanatory weight. What evolution- ary researchers should incorporate into their explanatory accounts, and what they should leave out, is far from a trivial issue. While biologists are typically content to leave the nature of causation to phil os o phers, there is scientific value in reflecting on core theoretical concepts. Dif fer ent views on causation can lead to alternative explanatory frameworks, dictate what counts as legitimate difference makers in evolutionary proc esses, and shape perspectives on key concepts such as natur al sel ection and adaptation. How causation is understood thus shapes the structure of evolutionary theory, with both historical and cont emporary debates in evolutionary biology revolving around the nature of causation (Laland et al. 2011). Yet, t hese issues