Epigenetic Technological Applications PDF
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Epigenetic Technological Applications Epigenetic Technological Applications Edited by Y. George Zheng AMSTERDAM(cid:129)BOSTON(cid:129)HEIDELBERG(cid:129)LONDON NEWYORK(cid:129)OXFORD(cid:129)PARIS(cid:129)SANDIEGO SANFRANCISCO(cid:129)SINGAPORE(cid:129)SYDNEY(cid:129)TOKYO AcademicPressisanimprintofElsevier AcademicPressisanimprintofElsevier 125,LondonWall,EC2Y5AS 525BStreet,Suite1800,SanDiego,CA92101-4495,USA 225WymanStreet,Waltham,MA02451,USA TheBoulevard,LangfordLane,Kidlington,OxfordOX51GB,UK Copyrightr2015ElsevierInc.Allrightsreserved. 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Practitionersandresearchersmayalwaysrelyontheirownexperienceandknowledgeinevaluatingandusinganyinformation,methods, compounds,orexperimentsdescribedherein.Inusingsuchinformationormethodstheyshouldbemindfuloftheirownsafetyandthesafety ofothers,includingpartiesforwhomtheyhaveaprofessionalresponsibility. Tothefullestextentofthelaw,neitherthePublishernortheauthors,contributors,oreditors,assumeanyliability foranyinjuryand/ordamagetopersonsorpropertyasamatterofproductsliability,negligenceorotherwise,orfromanyuseoroperationof anymethods,products,instructions,orideascontainedinthematerialherein. LibraryofCongressCataloging-in-PublicationData AcatalogrecordforthisbookisavailablefromtheLibraryofCongress BritishLibraryCataloguing-in-PublicationData AcataloguerecordforthisbookisavailablefromtheBritishLibrary ISBN:978-0-12-801080-8 Forinformationonallpublicationsvisit ourwebsiteathttp://store.elsevier.com TypesetbyMPSLimited,Chennai,India www.adi-mps.com Publisher:MicaHaley AcquisitionEditor:CatherineVanDerLaan EditorialProjectManager:LisaEppich ProductionProjectManager:MelissaRead Designer:AlanStudholme PrintedandboundintheUnitedStatesofAmerica List of Contributors Alison I. Bernstein Department ofHuman Genetics, Emory University,Atlanta, GA, USA Kelly M. Biette Massachusetts General Hospital Cancer Center and Department of Medicine, Harvard Medical School,Charlestown, MA, USA JoshuaC. Black Massachusetts General Hospital Cancer Center and Department of Medicine, Harvard Medical School,Charlestown, MA, USA Champak Chatterjee Department ofChemistry,University ofWashington, Seattle,WA,USA AiliChen Divisions of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, USA; Division of Pathology, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, USA; Key Laboratory of Genomic and Precision Medicine, Beijing Institute ofGenomics, Chinese Academy of Sciences, Beijing, China XiangyunAmy Chen Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, PennsylvaniaStateUniversity,PA,USA AbhinavDhall Department ofChemistry,University ofWashington, Seattle,WA,USA Alfonso Duen˜as-Gonza´lez Instituto de Investigaciones Biome´dicas, Universidad Nacional Auto´noma de Me´xico and Unidadde Investigacio´nBiome´dica en Ca´ncer,InstitutoNacional deCancerologı´a,Me´xico Yuhong Fan School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; The Petit Institute for Bioengineering and Bioscience, Georgia Instituteof Technology,Atlanta, GA, USA Benjamin A.Garcia Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania,Philadelphia, PA,USA Zhen Han Department of Pharmaceutical and Biochemical Sciences, The University of Georgia, Athens, Georgia,USA Alexander-ThomasHauser Institute ofPharmaceutical Sciences, Albert-Ludwigs-University ofFreiburg, Germany v vi List of Contributors GangHuang Divisions ofExperimental Hematology and Cancer Biology,Cincinnati Children’sHospital Medical Center,Cincinnati, Ohio,USA; Division ofPathology, CincinnatiChildren’s Hospital Medical Center,Cincinnati, Ohio,USA Kenneth Huang Department of Chemistry, Georgia State University,Atlanta,GA, USA PengJin Department of Human Genetics, EmoryUniversity,Atlanta,GA, USA Manfred Jung InstituteofPharmaceuticalSciences, Albert-Ludwigs-University ofFreiburg, Germany Shukkoor Kondengaden Department of Chemistry, Georgia State University,Atlanta,GA, USA JamesR. Kornacki DepartmentsofChemistryandBiomedicalEngineering,NorthwesternUniversity,Evanston,IL,USA HaitaoLi Department of Basic Medical Sciences, Center for StructuralBiology, School of Medicine, Tsinghua University, Beijing, P.R. China KeqinKathy Li Department of Chemistry, Georgia State University,Atlanta,GA, USA; State KeyLab of Medical Genomic, Ruijin Hospital Affiliated toMedical School ofShanghai Jiaotong University,Shanghai, P.R. China Junyan Lu DrugDiscovery and Design Center,StateKeyLaboratory ofDrugResearch, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai,China YepengLuan Department of Pharmaceutical and Biochemical Sciences, The University ofGeorgia,Athens, Georgia, USA ChengLuo DrugDiscovery and Design Center,StateKeyLaboratory ofDrugResearch, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai,China MinkuiLuo Molecular Pharmacology and Chemistry Program, Memorial Sloan KetteringCancerCenter, New York, NY,USA AntoniaMasch Department of Enzymology,Institute ofBiochemistry & Biotechnology,Martin-Luther-University Halle-Wittenberg,Halle,Germany Jose´ L. Medina-Franco Facultad de Qu´ımica, Departamento de Farmacia,Universidad Nacional Auto´noma de Me´xico, MexicoCity,Mexico List of Contributors vii Milan Mrksich Departments of Chemistry and Biomedical Engineering, Northwestern University, Evanston, IL, USA Liza Ngo Department of Pharmaceutical and Biochemical Sciences, The University of Georgia, Athens, Georgia,USA Adegboyega K. Oyelere Parker H. Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA, USA; School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA Chenyi Pan School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; The Petit Institute for Bioengineering and Bioscience, Georgia Instituteof Technology,Atlanta, GA, USA Sriharsa Pradhan GenomeBiologyDivision,New England Biolabs, Ipswich,Massachusetts, USA Zhang Qing Department ofChemistry,Georgia State University,Atlanta, GA, USA Meihua Qu College of Pharmaceutical and Biological Sciences, Weifang Medical University, Weifang, Shandong,P.R. China Ulf Reimer JPT PeptideTechnologies GmbH,Berlin,Germany Hamed Reyhanfard Department ofChemistry,Georgia State University,Atlanta, GA, USA Martin Roatsch Institute ofPharmaceutical Sciences, Albert-Ludwigs-University ofFreiburg, Germany Dina Robaa Department of Pharmaceutical Chemistry, Martin Luther University of Halle-Wittenberg, Germany JohannesSchulz-Fincke German Cancer Consortium, Heidelberg, Germany; German Cancer Research Center, Heidelberg, Germany; Institute of Pharmaceutical Sciences, Albert-Ludwigs-University of Freiburg, Germany Mike Schutkowski Department of Enzymology, Institute of Biochemistry & Biotechnology, Martin-Luther-University Halle-Wittenberg,Halle,Germany Simone Sidoli Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania,Philadelphia, PA,USA viii List of Contributors Wolfgang Sippl Department of Pharmaceutical Chemistry,Martin Luther University of Halle-Wittenberg, Germany Quaovi H.Sodji School ofChemistry and Biochemistry, Georgia Institute ofTechnology,Atlanta, GA, USA JinquanSun Center for Eukaryotic Gene Regulation, Department ofBiochemistry and Molecular Biology, Pennsylvania State University, PA, USA JolyonTerragni GenomeBiology Division, New England Biolabs, Ipswich,Massachusetts,USA Xiao-JunTian Department of Computational and Systems Biology,School ofMedicine,University of Pittsburgh, Pittsburgh,PA, USA PengGeorgeWang Department of Chemistry, Georgia State University,Atlanta,GA, USA XiaoshiWang Department of Biochemistry and Biophysics, Perelman School ofMedicine,University of Pennsylvania,Philadelphia, PA, USA XuejianWang Collegeof Pharmaceutical and Biological Sciences, WeifangMedical University, Weifang, Shandong, P.R. China YanmingWang Center for Eukaryotic Gene Regulation, Department ofBiochemistry and Molecular Biology, Pennsylvania State University, PA, USA Johnathan R.Whetstine Massachusetts General Hospital CancerCenter and Department ofMedicine, Harvard Medical School, Charlestown, MA, USA JonathanWooten Department of Chemistry, Georgia State University,Atlanta,GA, USA JianhuaXing BeijingComputationalScience Research Center, Beijing, China; Department ofComputational and Systems Biology,School ofMedicine, University ofPittsburgh,Pittsburgh, PA, USA Wei Xu McArdleLaboratory for CancerResearch, University ofWisconsin-Madison,Madison, WI,USA Jakyung Yoo Life Science Research Institute,Daewoong Pharmaceutical Co.,Ltd, Gyeonggi-do, Republic of Korea List of Contributors ix Jin Yu Beijing Computational Science ResearchCenter,Beijing, China Hao Zeng McArdleLaboratory for Cancer Research,University ofWisconsin-Madison,Madison, WI,USA JohannesZerweck JPT PeptideTechnologies GmbH,Berlin,Germany BingxueChrisZhai Department ofBiology,Georgia State University, Atlanta, GA, USA Hang Zhang Beijing Computational Science Research Center, Beijing, China; Department of Biological Sciences, Virginia PolytechnicInstitute and StateUniversity,Blacksburg, VA,USA Hao Zhang Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute ofMateria Medica, Chinese Academy ofSciences, Shanghai, China Liyi Zhang Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute ofMateria Medica, Chinese Academy ofSciences, Shanghai, China Yunzhe Zhang School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; The Petit Institute for Bioengineering and Bioscience, Georgia Instituteof Technology,Atlanta, GA, USA Shuai Zhao Department of Basic Medical Sciences, Center for Structural Biology, School of Medicine, Tsinghua University,Beijing, P.R. China Y.GeorgeZheng Department of Pharmaceutical and Biochemical Sciences, The University of Georgia, Athens, Georgia,USA
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