Ehrlich's Geomicrobiology PDF
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EHRLICH’S Geomicrobiology Sixth Edition © 2016 by Taylor & Francis Group, LLC © 2016 by Taylor & Francis Group, LLC EHRLICH’S Geomicrobiology Sixth Edition Edited by Henry Lutz Ehrlich, Dianne K. Newman, and Andreas Kappler © 2016 by Taylor & Francis Group, LLC CRC Press Taylor & Francis Group 6000 Broken Sound Parkway NW, Suite 300 Boca Raton, FL 33487-2742 © 2016 by Taylor & Francis Group, LLC CRC Press is an imprint of Taylor & Francis Group, an Informa business No claim to original U.S. Government works Version Date: 20150810 International Standard Book Number-13: 978-1-4665-9241-4 (eBook - PDF) This book contains information obtained from authentic and highly regarded sources. Reasonable efforts have been made to publish reliable data and information, but the author and publisher cannot assume responsibility for the valid- ity of all materials or the consequences of their use. 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Visit the Taylor & Francis Web site at http://www.taylorandfrancis.com and the CRC Press Web site at http://www.crcpress.com CONTENTS Preface / vii 10 • MICROBIAL FORMATION AND DEGRADATION OF CARBONATES / 209 Acknowledgments / ix Tanja Bosak, Jaroslav Stolarski, and Contributors / xi Anders Meiborn 1 • INTRODUCTION / 1 Henry Lutz Ehrlich, Dianne K. 11 • GEOMICROBIAL INTERACTIONS WITH Newman, and Andreas Kappler SILICON / 237 Kurt Konhauser 2 • EARTH AS A MICROBIAL HABITAT / 7 Henry Lutz Ehrlich 12 • GEOMICROBIOLOGY OF ALUMINUM: MICROBES AND BAUXITE / 257 3 • EMERGENCE OF LIFE AND ITS EARLY Henry Lutz Ehrlich HISTORY / 19 Michael Russell 13 • GEOMICROBIAL INTERACTIONS WITH PHOSPHORUS / 265 4 • UPPERMOST LITHOSPHERE AS A Bernhard Schink and Diliana MICROBIAL HABITAT / 55 D. Simeonova Henry Lutz Ehrlich 5 • TERRESTRIAL SUBSURFACE ECOSYSTEM / 69 14 • GEOMICROBIOLOGY OF NITROGEN / 281 Michael Wilkins and James K. Fredrickson Christopher A. Francis and Karen L. Casciotti 6 • HYDROSPHERE AS MICROBIAL HABITAT / 97 15 • GEOMICROBIAL INTERACTIONS WITH Mak Saito ARSENIC AND ANTIMONY / 297 Ronald Oremland 7 • GEOMICROBIAL PROCESSES: A PHYSIOLOGICAL AND BIOCHEMICAL OVERVIEW / 129 16 • GEOMICROBIOLOGY OF MERCURY / 323 Henry Lutz Ehrlich Robert Mason 8 • CULTIVATION, IN SITU MEASUREMENTS, 17 • GEOMICROBIOLOGY OF IRON / 343 AND GEOCHEMICAL TECHNIQUES FOR Andreas Kappler, David Emerson, GEOMICROBIOLOGICAL STUDIES / 157 Jeffrey A. Gralnick, Eric E. Roden, Greg Druschel and Victoria J. Orphan and E. Marie Muehe 9 • MOLECULAR METHODS IN GEOMICROBIOLOGY / 187 18 • GEOMICROBIOLOGY OF MANGANESE / 401 Maureen L. Coleman and Dianne K. Newman Colleen M. Hansel and Deric R. Learman v © 2016 by Taylor & Francis Group, LLC 19 • GEOMICROBIAL INTERACTIONS 21 • BIOGENESIS AND BIODEGRADATION WITH OTHER TRANSITION METALS OF SULFIDE MINERALS IN THE EARTH’S (CHROMIUM, MOLYBDENUM, SURFACE / 517 VANADIUM, TECHNETIUM), METALLOIDS Henry Lutz Ehrlich (POLONIUM), ACTINIDES (URANIUM, NEPTUNIUM, AND PLUTONIUM), AND 22 • GEOMICROBIOLOGY OF SELENIUM AND THE RARE EARTH ELEMENTS / 453 TELLURIUM / 551 Jonathan R. Lloyd, John D. Coates, John Stolz Adam J. Williamson, and Matthew P. Watts 23 • GEOMICROBIOLOGY OF FOSSIL FUELS / 565 20 • GEOMICROBIOLOGY OF SULFUR / 479 Ian M. Head David A. Fike, Alexander S. Bradley, and William D. Leavitt Index / 623 vi © 2016 by Taylor & Francis Group, LLC PREFACE The sixth edition of this book was prepared in rec- In this new edition, each chapter from the fifth ognition of the continuing rapid advances in the edition has been revised and updated or com- field of geomicrobiology. Unlike the fifth edition, pletely rewritten by one or more experts on a given prepared jointly by Henry Lutz Ehrlich and Dianne subject, with the exceptions of Chapters 11 and K. Newman, the present edition is a cooperative 20 from the previous edition, which have been effort under the joint editorship of Henry Lutz left essentially unchanged. In recognition of the Ehrlich, Dianne K. Newman, and Andreas Kappler. rapid new developments on the topic of the deep Despite the reluctance of one of us to name a book subsurface, the discussion on this subject, which after himself, the new title, Ehrlich’s Geomicrobiology, was previously included in the new Chapter 4 of is only fitting, as it acknowledges Henry Ehrlich’s the fifth edition, is treated separately and in much pioneering role in the geomicrobiology field and greater detail in Chapter 5 under the authorship in creating and updating this classic text. We are of Michael Wilkins and James Fredrickson in the delighted that Henry finally acquiesced. present edition. vii © 2016 by Taylor & Francis Group, LLC © 2016 by Taylor & Francis Group, LLC ACKNOWLEDGMENTS We, the editors, express sincere appreciation left unmodified for the sixth edition because it to each of the individuals who contributed to still reflected the state of knowledge on the topic the revising and updating of different chapters at the time of preparation of the latter edition. and who are named under the respective chap- Kathryn Everett and Chuck Crumly of CRC ter headings. In addition, we thank the follow- Press, Taylor & Francis Group, were most help- ing individuals, listed in alphabetical order, ful in their advice during the preparation of this who reviewed individual revised and updated or edition. rewritten chapters: Gregory Dick, Woody Fischer, Responsibility for the presentation and inter- William C. Ghiorse, Lisa Gieg, Brian Glazer, Jeff pretation of the subject matter in this edition Gralnick, Tim Hollibaugh, Nick Lane, Lynne rests with the contributors and the editors of this Macaskie, Ronald Oremland, Alexandre Poulain, edition. Chad Saltikov, Allison Santoro, Gordon Southam, Brad Tebo, Dominique Tobler, and Nathan Yee. HENRY LUTZ EHRLICH DIANNE K. NEWMAN Thanks to Grant Ferris for reviewing Chapter 11 ANDREAS KAPPLER of the fifth edition and recommending that it be ix © 2016 by Taylor & Francis Group, LLC © 2016 by Taylor & Francis Group, LLC
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