Health Information Science Siuly Siuly Yan Li Yanchun Zhang EEG Signal Analysis and Classification Techniques and Applications Health Information Science Series editor Yanchun Zhang, Victoria University, Melbourne, Victoria, Australia Editorial Board Riccardo Bellazzi, University of Pavia, Italy Leonard Goldschmidt, Stanford University Medical School, USA Frank Hsu, Fordham University, USA Guangyan Huang, Victoria University, Australia Frank Klawonn, Helmholtz Centre for Infection Research, Germany Jiming Liu, Hong Kong Baptist University, Hong Kong Zhijun Liu, Hebei University of Engineering, China Gang Luo, University of Utah, USA Jianhua Ma, Hosei University, Japan Vincent Tseng, National Cheng Kung University, Taiwan Dana Zhang, Google, USA Fengfeng Zhou, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, China With the development of database systems and networking technologies, Hospital Information Management Systems (HIMS) and web-based clinical or medical systems (such as the Medical Director, a generic GP clinical system) are widely used in health and clinical practices. Healthcare and medical service are more data-intensive and evidence-based since electronic health records are now used to track individuals’ and communities’ health information. These highlights substan- tially motivate and advance the emergence and the progress of health informatics research and practice. Health Informatics continues to gain interest from both academia and health industries. The significant initiatives of using information, knowledge and communication technologies in health industries ensures patient safety, improve population health and facilitate the delivery of government healthcare services. Books in the series will reflect technology’s cross-disciplinary research in IT and health/medical science to assist in disease diagnoses, treatment, prediction and monitoring through the modeling, design, development, visualiza- tion,integrationandmanagementofhealthrelatedinformation.Thesetechnologies include information systems, web technologies, data mining, image processing, userinteractionandinterfaces,sensorsandwirelessnetworking,andareapplicable toawiderangeofhealth-relatedinformationsuchasmedicaldata,biomedicaldata, bioinformatics data, and public health data. More information about this series at http://www.springer.com/series/11944 Siuly Siuly Yan Li Yanchun Zhang (cid:129) (cid:129) EEG Signal Analysis fi and Classi cation Techniques and Applications 123 Siuly Siuly YanchunZhang Centrefor Applied Informatics, Collegeof Centrefor Applied Informatics, Collegeof EngineeringandScience EngineeringandScience Victoria University Victoria University Melbourne, Victoria Melbourne, Victoria Australia Australia Yan Li and Schoolof Agricultural, Computational and Environmental Sciences, Faculty of Schoolof Computer Science Health,Engineering andSciences FudanUniversity University of SouthernQueensland Shanghai Toowoomba, Queensland China Australia ISSN 2366-0988 ISSN 2366-0996 (electronic) HealthInformation Science ISBN978-3-319-47652-0 ISBN978-3-319-47653-7 (eBook) DOI 10.1007/978-3-319-47653-7 LibraryofCongressControlNumber:2016959570 ©SpringerInternationalPublishingAG2016 Thisworkissubjecttocopyright.AllrightsarereservedbythePublisher,whetherthewholeorpart of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission orinformationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilar methodologynowknownorhereafterdeveloped. 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Printedonacid-freepaper ThisSpringerimprintispublishedbySpringerNature TheregisteredcompanyisSpringerInternationalPublishingAG Theregisteredcompanyaddressis:Gewerbestrasse11,6330Cham,Switzerland To people who are suffering from neurological diseases and disorders Preface Electroencephalography(EEG)hasplayedaprominentroleinbrainstudies,mental and brain diseases’ and disorders’ diagnosis, and treatments in medical fields. The examination of EEG signals has been recognized as the most preponderant approach to the problem of extracting knowledge of brain dynamics. At present, EEG recordings are widely used for epilepsy diagnosis and for brain computer interfaces(BCIs).ThemainuseofanEEGistodetectandinvestigateepilepsythat causes seizures. In BCI systems, EEG signals help to restore sensory and motor functions in patients who have severe motor disabilities. Generally, the vast amountsofmulti-channelEEGsignalsarevisuallyanalysedbyanexperttoidentify and understand abnormalities within the brain and how they propagate. The visual inspection approach for such huge EEG data is not a satisfactory procedure for accurate and reliable diagnosis and interpretation as this process is time-consuming,burdensome,reliantonexpensivehumanresources,andsubjectto errorandbias.Anextensiveamountofresearchisrequiredforautomaticdiagnosis ofepilepticseizuresandalsofortheautomaticidentificationofmentalstatestohelp motor disabled people through BCI systems. Hence, inthis monograph, we aim to develop advanced methods for the analysis and classification of epileptic EEG signals and also for the identification of mental states in BCI applications. A number of edited books have been published in these two areas (but never have they been presented together in one book) and those books present common signal processing techniques such as, wavelet transformation, Fourier transforma- tionforEEGdataanalysis.Thisbook,however,presentssomedifferentEEGsignal analysis approaches; combining statistical techniques (e.g. random sampling, optimum allocation, etc.) and machine learning methods. In this book, the authors present their methods that provide better performance compared to the existing methods. The book consists offour parts with 13 chapters. Part I provides a basic over- view of EEG signals including concept, generation procedure, characteristics, nature and abnormal patterns. This part also provides a discussion of the different applicationsofEEGsignalsforthediagnosisofbraindiseasesandabnormalities.In addition,weprovidetheaimsofthisbook,descriptionofanalyzeddatasetsusedin vii viii Preface the research, performance evaluation measures and a short review of commonly used methods in EEG signal classification in Part I. Part II presents our developed techniques and models for the detection of epileptic seizures through EEG signal processing. Implementation of these proposed methods in real-time databases will also be highlighted. In Part III, we introduce the methods for identifying mental states from EEG data designed for BCI systems and their applications in several benchmark datasets. We also report the experimental procedure with the results of each methodology. Finally, we provide an overall discussion on EEG signal analysis and classification in Part IV. This part gives a summary discussion on the developed methods, future directions in the EEG signal analysis area and conclu- sions with suggestions for future research. Melbourne, Australia Siuly Siuly Toowoomba, Australia Yan Li Melbourne, Australia and Shanghai, China Yanchun Zhang Contents Part I Introduction 1 Electroencephalogram (EEG) and Its Background. .... ..... .... 3 1.1 What Is EEG?. .... ..... .... .... .... .... .... ..... .... 3 1.2 Generation Organism of EEG Signals in the Brain.. ..... .... 7 1.3 Characteristics and Nature of EEG Signals.... .... ..... .... 11 1.4 Abnormal EEG Signal Patterns. .... .... .... .... ..... .... 14 References. .... .... .... ..... .... .... .... .... .... ..... .... 19 2 Significance of EEG Signals in Medical and Health Research. .... 23 2.1 EEG in Epilepsy Diagnosis ... .... .... .... .... ..... .... 24 2.2 EEG in Dementia Diagnosis... .... .... .... .... ..... .... 26 2.3 EEG in Brain Tumour Diagnosis ... .... .... .... ..... .... 27 2.4 EEG in Stroke Diagnosis . .... .... .... .... .... ..... .... 28 2.5 EEG in Autism Diagnosis. .... .... .... .... .... ..... .... 28 2.6 EEG in Sleep Disorder Diagnosis... .... .... .... ..... .... 29 2.7 EEG in Alcoholism Diagnosis . .... .... .... .... ..... .... 30 2.8 EEG in Anaesthesia Monitoring.... .... .... .... ..... .... 30 2.9 EEG in Coma and Brain Death .... .... .... .... ..... .... 31 2.10 EEG in Brain–Computer Interfaces (BCIs).... .... ..... .... 32 2.11 Significance of EEG Signal Analysis and Classification... .... 34 2.12 Concept of EEG Signal Classification.... .... .... ..... .... 35 2.13 Computer-Aided EEG Diagnosis ... .... .... .... ..... .... 38 References. .... .... .... ..... .... .... .... .... .... ..... .... 39 3 Objectives and Structures of the Book... .... .... .... ..... .... 43 3.1 Objectives.... .... ..... .... .... .... .... .... ..... .... 43 3.2 Structure of the Book.... .... .... .... .... .... ..... .... 44 3.3 Materials. .... .... ..... .... .... .... .... .... ..... .... 46 3.3.1 Analyzed Data... .... .... .... .... .... ..... .... 46 3.3.2 Performance Evaluation Parameters... .... ..... .... 50 ix x Contents 3.4 Commonly Used Methods for EEG Signal Classification.. .... 52 3.4.1 Methods for Epilepsy Diagnosis . .... .... ..... .... 52 3.4.2 Methods for Mental State Recognition in BCIs... .... 54 References. .... .... .... ..... .... .... .... .... .... ..... .... 56 PartII TechniquesfortheDiagnosisofEpilepticSeizuresfromEEG Signals 4 Random Sampling in the Detection of Epileptic EEG Signals. .... 65 4.1 Why Random Sampling in Epileptic EEG Signal Processing?... .... ..... .... .... .... .... .... ..... .... 65 4.2 SimpleRandomSamplingBasedLeastSquareSupportVector Machine . .... .... ..... .... .... .... .... .... ..... .... 67 4.2.1 Random Sample and Sub-sample Selection Using SRS Technique .. .... .... .... .... .... ..... .... 68 4.2.2 Feature Extraction from Different Sub-samples... .... 69 4.2.3 Least Square Support Vector Machine (LS-SVM) for Classification.... .... .... .... .... .... ..... .... 70 4.3 Experimental Results and Discussions ... .... .... ..... .... 72 4.3.1 Results for Epileptic EEG Datasets... .... ..... .... 73 4.3.2 Results for the Mental Imagery Tasks EEG Dataset ... 78 4.3.3 Results for the Two-Class Synthetic Data.. ..... .... 79 4.4 Conclusions .. .... ..... .... .... .... .... .... ..... .... 81 References. .... .... .... ..... .... .... .... .... .... ..... .... 81 5 A Novel Clustering Technique for the Detection of Epileptic Seizures .. .... .... .... ..... .... .... .... .... .... ..... .... 83 5.1 Motivation ... .... ..... .... .... .... .... .... ..... .... 84 5.2 Clustering Technique Based Scheme .... .... .... ..... .... 84 5.2.1 Clustering Technique (CT) for Feature Extraction. .... 85 5.3 Implementation of the Proposed CT-LS-SVM Algorithm.. .... 87 5.4 Experimental Results and Discussions ... .... .... ..... .... 89 5.4.1 Classification Results for the Epileptic EEG Data. .... 89 5.4.2 Classification Results for the Motor Imagery EEG’ Data.. .... ..... .... .... .... .... .... ..... .... 92 5.5 Conclusions .. .... ..... .... .... .... .... .... ..... .... 96 References. .... .... .... ..... .... .... .... .... .... ..... .... 96 6 A Statistical Framework for Classifying Epileptic Seizure from Multi-category EEG Signals... .... .... .... .... .... ..... .... 99 6.1 Significance of the OA Scheme in the EEG Signals Analysis and Classification .. ..... .... .... .... .... .... ..... .... 99 6.2 Optimum Allocation-Based Framework .. .... .... ..... .... 100 6.2.1 Sample Size Determination. .... .... .... ..... .... 101 6.2.2 Epoch Determination.. .... .... .... .... ..... .... 102 6.2.3 Optimum Allocation .. .... .... .... .... ..... .... 103
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