DNA Barcoding in Marine Perspectives: Assessment and Conservation of Biodiversity PDF
Preview DNA Barcoding in Marine Perspectives: Assessment and Conservation of Biodiversity
Subrata Trivedi · Abid Ali Ansari Sankar K. Ghosh · Hasibur Rehman Editors DNA Barcoding in Marine Perspectives Assessment and Conservation of Biodiversity DNA Barcoding in Marine Perspectives Subrata Trivedi Abid Ali Ansari (cid:129) Sankar K. Ghosh Hasibur Rehman (cid:129) Editors DNA Barcoding in Marine Perspectives Assessment and Conservation of Biodiversity 123 Editors SubrataTrivedi Sankar K.Ghosh Department ofBiology, Faculty of Science Department ofBiotechnology University of Tabuk AssamUniversity Tabuk Assam SaudiArabia India AbidAli Ansari Hasibur Rehman Department ofBiology, Faculty of Science Department ofBiology, Faculty of Science University of Tabuk University of Tabuk Tabuk Tabuk SaudiArabia SaudiArabia ISBN978-3-319-41838-4 ISBN978-3-319-41840-7 (eBook) DOI 10.1007/978-3-319-41840-7 LibraryofCongressControlNumber:2016947023 ©SpringerInternationalPublishingSwitzerland2016 Thisworkissubjecttocopyright.AllrightsarereservedbythePublisher,whetherthewholeorpart of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission orinformationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilar methodologynowknownorhereafterdeveloped. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publicationdoesnotimply,evenintheabsenceofaspecificstatement,thatsuchnamesareexemptfrom therelevantprotectivelawsandregulationsandthereforefreeforgeneraluse. The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authorsortheeditorsgiveawarranty,expressorimplied,withrespecttothematerialcontainedhereinor foranyerrorsoromissionsthatmayhavebeenmade. Printedonacid-freepaper ThisSpringerimprintispublishedbySpringerNature TheregisteredcompanyisSpringerInternationalPublishingAGSwitzerland “We would like to dedicate this book to our parents and mentors” Dr. Subrata Trivedi andDr. Hasibur Rehman Preface WhenIhearofthedestructionofaspecies,Ifeeljustasifall theworksofsomegreatwriterhaveperished. —TheodoreRoosevelt Weknowthatwhenweprotectouroceanswe’reprotecting ourfuture. —BillClinton The oceans cover more than 70 % of our planet’s surface area, and the massive marine and coastal environments are blessed with diverse marine life. To meet the demands of increasing population we are becoming more reliant on the marine bioresources.Forexampleonlythemarinefishandinvertebratesprovidemorethan 2.6 billion people with about 20 % per capita protein consumption. To make the marineenvironmentsustainable,theproperassessmentandconservationofmarine biodiversity is of prime importance. In the last decade, the molecular technique of DNAbarcodinghasbecomeaneffectivetoolintheassessmentandconservationof biodiversity. The marine ecosystem is threatened by several activities such as overfishing, introduction of invasive alien species, depleting mangrove and sea grass cover, illegal trading of endangered marine species and their body parts, etc. DNA barcoding plays a very significant role in all these aspects along its primary role in the proper and prompt identification of species. In this book we discuss DNA barcoding from the marine perspective. The present book offers insights into different aspects of DNA barcoding in relation to the marine habitat. The chapters cover diverse marine life including marine plants such as phytoplanktons, marine algae, seagrasses, and also marine animals as marine invertebrates including the primitive nemartines, horse shoe crabs,fishes,etc.Sincemarinefisheryhasaverysignificantrole,aspecialemphasis has been given to DNA barcoding of marine fishes including Antarctic fishes. The chaptersalsoincludeaspectssuchasbioinformatics,seafoodsafetyassessmentand authentication. Many of the chapters are based on the research projects and case history studies conducted at specific sites and also around the globe. The chapters vii viii Preface not only describe the promise of DNA barcoding but also some of its pitfalls. The contribution made by authors from nine different countries has enriched this book. The editors and the contributing authors think that this book will provide important and interesting insights to DNA barcoding in the diverse and massive marineecosystem.Tilldate,onlyafewbooksareavailableonDNAbarcodingand we hope this book will fill the lacuna. This is the first book related to DNA barcoding exclusively on marine organisms. Tabuk, KSA Subrata Trivedi Tabuk, KSA Abid Ali Ansari Silchar, India Sankar K. Ghosh Tabuk, KSA Hasibur Rehman Contents Part I Overview, Significance and Bioinformatics DNA Barcoding in the Marine Habitat: An Overview.. .... ..... .... 3 Subrata Trivedi, Hasibur Rehman, Shalini Saggu, Chellasamy Panneerselvam, Zahid Khorshid Abbas, Iqbal Ahmad, Abid A. Ansari and Sankar K. Ghosh Measurement of a Barcode’s Accuracy in Identifying Species..... .... 29 John L. Spouge DNA Barcoding: A Tool to Assess and Conserve Marine Biodiversity .... .... ..... .... .... .... .... .... ..... .... 43 Sudakshina Ghosh, Biswabandhu Bankura and Madhusudan Das Safety Assessment and Authentication of Seafood Through DNA Barcoding.... ..... .... .... .... .... .... ..... .... 63 Shalini Saggu, Hasibur Rehman, Subrata Trivedi, Al Thbiani Aziz and Jayda G. Eldiasty Bioinformatics Tools in Marine DNA Barcoding .. .... .... ..... .... 71 Pradosh Mahadani, Subrata Trivedi, Hasibur Rehman and Shalini Saggu Part II DNA Barcoding of Marine Invertebrates Morphological and COI Sequence Based Characterisation of Marine Polychaete Species from Great Nicobar Island, India... .... 89 V. Sekar, R. Rajasekaran, C. Prasannakumar, R. Sankar, R. Sridhar and V. Sachithanandam Revised Phylogeny of Extant Xiphosurans (Horseshoe Crabs) .... .... 113 B. Akbar John, Hassan I. Sheikh, K. C. A. Jalal, K. Zaleha and B. Y. Kamaruzzaman DNA Barcoding in Marine Nematodes: Successes and Pitfalls .... .... 131 Punyasloke Bhadury ix x Contents DNA Barcoding of Calanoid Copepods from the Gulf of California.... 147 Juan Ramon Beltrán-Castro and Sergio Hernández-Trujillo DNA Barcoding of Primitive Species-Nemertine from Sundarbans Marine Bio-resource.... .... ..... .... .... .... .... .... ..... .... 157 Bishal Dhar, Apurba Ghose, Sharbadeb Kundu, Amalesh Choudhury, SudiptaGhorai,SubrataTrivedi,JoyobratoNathandSankarKumarGhosh Future Perspectives of DNA Barcoding in Marine Zooplanktons and Invertebrates .. .... .... ..... .... .... .... .... .... ..... .... 169 Farhina Pasha, Shalini Saggu and Maryam Fahad Albalawi DNA Barcoding: Molecular Positioning of Living Fossils (Horseshoe Crab) .. .... .... ..... .... .... .... .... .... ..... .... 181 Bishal Dhar, Apurba Ghose, Sharbadeb Kundu, Sorokhaibam Malvika, Ningthoujam Neelima Devi, Amalesh Choudhury, Sudipta Ghorai, Subrata Trivedi and Sankar Kumar Ghosh Part III DNA Barcoding of Marine Fishes Mitochondrial DNA Diversity of Wild and Hatchery Reared Strains of Indian Lates calcarifer (Bloch) .... .... .... .... ..... .... 203 Prasanna Kumar, B. Akbar John and V. Kanagasabapathy Barcoding Antarctic Fishes: Species Discrimination and Contribution to Elucidate Ontogenetic Changes in Nototheniidae.... .... ..... .... 213 E. Mabragaña, S. M. Delpiani, J. J. Rosso, M. González-Castro, M. Deli Antoni, R. Hanner and J. M. Díaz de Astarloa Barcoding of Indian Marine Fishes: For Identification and Conservation.. .... .... .... ..... .... .... .... .... .... ..... .... 243 V.S.Basheer,LabrechaiMogChowdhury,C.MohithaandK.K.Bineesh DNA Barcoding Identifies Brackish Water Fishes from Nallavadu Lagoon, Puducherry, India... ..... .... .... .... .... .... ..... .... 271 V. Sachithanandam, P. M. Mohan, N. Muruganandam, R. Sivasankar, P. Arunkumar, T. Mageswaran and R. Sridhar DNA Barcoding of Marine Fishes: Prospects and Challenges..... .... 285 AnnamPavan-Kumar,P.Gireesh-Babu,A.K.Jaiswar,AparnaChaudhari, Gopal Krishna and W. S. Lakra Part IV DNA Barcoding of Marine Plants DNA Barcoding in Phytoplankton and Other Algae in Marine Ecosystem: An Effective Tool for Biodiversity Assessment .. ..... .... 303 Farhina Pasha A Search for a Single DNA Barcode for Seagrasses of the World . .... 313 Barnabas H. Daru and Kowiyou Yessoufou Part I Overview, Significance and Bioinformatics
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