Biotechnology in Agriculture and Forestry Volume 65 Series Editors Prof.Dr.JackM.Widholm(ManagingEditor) 285AE.R.MadiganLaboratory,DepartmentofCropSciences, UniversityofIllinois,1201W.Gregory,Urbana,IL61801,USA Prof.Dr.HorstLo¨rz BiozentrumKleinFlottbek,MolekularePhytopathologieundGenetik, Universita¨tHamburg,Ohnhorststr.18,22609Hamburg,Germany Prof.Dr.ToshiyukiNagata ProfessorandDean,FacultyofBiologicalSciencesandAppliedChemistry, HoseiUniversity,3-7-2Kajino-cho,Koganei-shi,Tokyo184-8584,Japan; EmeritusProfessoroftheUniversityofTokyo,7-3-1Hongo,Bunkyo-ku, Tokyo113-0033,Japan Biotechnology in Agriculture and Forestry Further volumes can be found at springer.com. Volume32:CryopreservationofPlantGermplasmI(1995) Volume33:MedicinalandAromaticPlantsVIII(1995) Volume34:PlantProtoplastsandGeneticEngineeringVI(1995) Volume35:TreesIV(1996) Volume36:SomaclonalVariationinCropImprovementII(1996) Volume37:MedicinalandAromaticPlantsIX(1996) Volume38:PlantProtoplastsandGeneticEngineeringVII(1996) Volume39:High-TechandMicroprogationV(1997) Volume40:High-TechandMicroprogationVI(1997) Volume41:MedicinalandAromaticPlantsX(1998) Volume42:Cotton(1998) Volume43:MedicinalandAromaticPlantsXI(1999) Volume44:TransgenicTrees(1999) Volume45:TransgenicMedicinalPlants(1999) Volume46:TransgenicCrops1I(1999) Volume47:TransgenicCropsII(2001) Volume48:TransgenicCropsIII(2001) Volumes1–48wereeditedbyY.P.S.Bajaj† Volume49:SomaticHybridizationinCropImprovementII(2001) T.NagataandY.P.S.Bajaj(Eds.) Volume50:CryopreservationofPlantGermplasmII(2002) L.E.TowillandY.P.S.Bajaj(Eds.) Volume51:MedicinalandAromaticPlantsXII(2002) T.NagataandY.Ebizuka(Eds.) 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Volume64:GeneticModificationofPlants:Agriculture,HorticultureandForestry(2010) F.KempkenandC.Jung(Eds.) Volume65:Cotton:BiotechnologicalAdvances(2010) U.B.Zehr(Ed.) Usha Barwale Zehr Editor Cotton Biotechnological Advances Editor Dr.UshaB.Zehr MahycoResearchCenter Dawalwadi Jalna431203 Maharashtra,India [email protected] ISSN0934-943X ISBN978-3-642-04795-4 e-ISBN978-3-642-04796-1 DOI10.1007/978-3-642-04796-1 SpringerHeidelbergDordrechtLondonNewYork LibraryofCongressControlNumber:2009938018 #Springer-VerlagBerlinHeidelberg2010 Thisworkissubjecttocopyright.Allrightsarereserved,whetherthewholeorpartofthematerialis concerned,specificallytherightsoftranslation,reprinting,reuseofillustrations,recitation,broadcasting, reproductiononmicrofilmorinanyotherway,andstorageindatabanks.Duplicationofthispublication orpartsthereofispermittedonlyundertheprovisionsoftheGermanCopyrightLawofSeptember9, 1965,initscurrentversion,andpermissionforusemustalwaysbeobtainedfromSpringer.Violations areliabletoprosecutionundertheGermanCopyrightLaw. Theuseofgeneraldescriptivenames,registerednames,trademarks,etc.inthispublicationdoesnot imply, even in the absence of a specific statement, that such names are exempt from the relevant protectivelawsandregulationsandthereforefreeforgeneraluse. Coverdesign:SPiPublisherServices Printedonacid-freepaper SpringerispartofSpringerScience+BusinessMedia(www.springer.com) This book is dedicated to Dr. Brent Eugene Zehr, starting with maize breeding he grew more and more interested in cotton and the impact of biotechnology in cotton in India, dedicating the last 10 years of his life to improving cotton. Preface The food, feed, fiber, and fuel needs of the changing world pose the challenge of doubling or tripling of world food, feed, and fiber production by the year 2050 to meettheneedsofa11billionglobalpopulation.Inaddition,thedramaticchanges in food prices in the recent years further warrant that production and productivity need to be enhanced to ensure adequate supplies. Biotechnology can make a significant contribution to this effort as demonstrated by cotton and other crops; the new advances in biotechnology have made it possible to develop plants that containgenesthatwerenotpossibletobedevelopedbysexualmeans.Cottonhas been a leader in the use of biotechnology. With the introduction of Bt cotton, followedbystackedcottonproducts(insectandherbicidetolerance)andextensive useofmolecularbreedingtools,cottoncultivationhasbeenmuchimproved. Thecontributionsinthisbookillustratethescientificadvancesthataregoingon in cotton and the impact they continue to deliver for all cotton growers. Twelve percentoftheglobalcottonareaisnowunderbiotechproductsat15.5millionha. The primary benefits from using genetically engineered cotton include reduced insecticideuse, lowerproductioncosts,improvedyields,lowerfarmingrisks,and increasedopportunitiestogrowcottoninareasofseverepestinfestation.Secondary benefits include higher populations of beneficial insects in cotton fields, reduced pesticide runoff and air pollution, less exposure to the farm worker, reductions in laborandfueluse,andimprovedsoilandwaterquality. Cotton crop is used for multiple purposes, fiber being the key component. However, cotton oil, cotton meal, and plant residues are also utilized by various industries. The impacts of GE cotton on human health and the environment have beenstudied,showingapositiveimpact. Countries where Bt cotton or other genetically engineered cotton has been cultivatedhaveinplacestringentregulatorymechanismsusuallymonitoredbyseveral ministries.Undertheseguidelines,studieshaveconcludedthatgeneticallyengineered cottondoesnotposeanydifferentriskstohumanoranimalhealththannon-GEcotton andenvironmentally,ithasapositiveimpact,includingonbiodiversity. vii viii Preface Studies in India and China show that Bt cotton has impacted the farm, the farmer, and the consumers by increasing the yields and reducing insecticide use inbothcountries. Also, the benefits of the technology have been seen at all farm size levels, whether it is with the small holder farmers or with the large farms of North America. Thenewresearchhighlightedinthisbookalsoshowshowmoleculargeneticsis leading the way to improved efficiency by understanding the cotton genome and applying this information to the identification of markers, genes, or metabolic processestoenhancebreedingefficiencies,aswellasnewproductdevelopment. Thefuturegenerationofbiotechcottonproductsarebeginningtoaddressmore complex traits such as drought, salinity, or fertilizer use. A cotton revolution has already taken place, and these new technologies will continue to improve cotton productionaroundtheworld.Theywillhaveapositiveimpactonthelivelihoodsof millionsofcotton farmersandwill supply the growing needs ofthe consumer for thismostimportantnaturalfiber. November2009 UshaZehr Contents 1 Cotton:AnIntroduction ................................................. 1 B.M.Khadi,V.Santhy,andM.S.Yadav 1.1 Introduction ............................................................ 1 1.2 HistoryandTaxonomy ................................................ 2 1.3 OriginandDistribution ................................................ 5 1.3.1 Origin,DomesticationandDistributioinofDiploids .......... 6 1.3.2 Origin,DomesticationandDistribution ofAllotetraploidCottons ....................................... 7 1.4 GermplasmResourcesinCotton ..................................... 10 1.4.1 PrimaryGenePool ............................................. 10 1.4.2 SecondaryGenePools ......................................... 11 1.4.3 TertiaryGenePool ............................................. 11 References ................................................................. 12 2 CottoninIndia ........................................................... 15 B.M.Khadi,V.Santhy,andM.S.Yadav 2.1 Introduction ........................................................... 15 2.2 CottonImprovementinIndia ......................................... 18 2.2.1 GeneralSelectionProcedures ................................. 19 2.2.2 MethodstoExploitHeterosisand/orRecombination ......... 19 2.2.3 PopulationImprovementApproaches ......................... 20 2.2.4 BreedingMethodsforSpecificPurposes ...................... 21 2.2.5 CompositeCrossing ........................................... 23 2.3 HeterosisBreedinginCotton ......................................... 23 2.3.1 GeneralFeaturesofHybridVigorinCotton .................. 24 2.3.2 HybridSeedProductionTechniquesinCotton ............... 24 2.3.3 IdentificationofGoodCombiners ............................. 24 2.3.4 HandEmasculationandPollination ........................... 25 2.4 UseofMaleSterility .................................................. 25 2.4.1 MaleSterilityinTetraploid .................................... 25 2.4.2 MaleSterilityinDiploids ...................................... 26 2.4.3 ThermoSensitiveGeneticMaleSterility ...................... 27 ix x Contents 2.5 BeePollination ........................................................ 27 2.6 FactorsAffectingYieldandQualityofHybridSeed ................ 28 2.7 Apomixis .............................................................. 28 2.8 BreedingforInsectResistance ....................................... 29 2.8.1 ConventionalBreedingApproach ............................. 29 2.8.2 BiotechnologicalApproach .................................... 31 2.9 BtCotton .............................................................. 32 2.9.1 DevelopmentofBtKits ....................................... 35 2.9.2 DiseaseResistance ............................................. 35 2.9.3 FiberQualityandItsImprovement ............................ 37 2.10 ValueAdditionforCotton .......................................... 37 2.11 Export ................................................................ 38 2.12 NaturallyColoredCotton ........................................... 39 2.13 MolecularMarkerTechniquesUsedinCottonImprovement ...... 39 2.14 FutureStrategies ..................................................... 39 References ................................................................. 40 3 CottonGenomics ......................................................... 45 A.H.Paterson 3.1 TheNeedforCottonBiotechnology ................................. 45 3.2 GeneticMappingandDNAMarker-AssistedBreeding ............. 46 3.2.1 GeneticMappingandDNAMarkers .......................... 46 3.2.2 TraitandQTLMapping ....................................... 47 3.2.3 Genome-WideIntrogression ................................... 48 3.3 TheCottonGenomesandProgressTowardsTheirSequencing ..... 49 3.3.1 TheCottonTranscriptomeandPatternsofGene Expression ..................................................... 49 3.3.2 BeyondtheTranscriptome–SequencingofEntire CottonGenomes ............................................... 50 3.4 AftertheSequence–AnalysisofCottonGeneFunctions ........... 54 3.4.1 DeductionsfromCorrespondenceofCottonGenes toThoseofOtherOrganisms .................................. 54 3.4.2 MutagenesisofCottonGenestoDeterminethe PhenotypicEffectsofTheirLoss .............................. 54 3.4.3 Transformation ................................................. 55 References ................................................................. 56 4 CottonTransformation .................................................. 65 D.R.Duncan 4.1 Introduction ........................................................... 65 4.2 CottonTissueCulture ................................................ 66 4.3 Transformation ........................................................ 68 4.4 Conclusion ............................................................ 73 References ................................................................. 73