Biopolymers 1996: Vol 39 Index

11 Pages·1996·2.6 MB·English

BIOPOLYMERS
ORIGINAL RESEARCH ON BIOMOLECULES
Volume 39 ¢« 1996
Editor : Murray Goodman
Department of Chemistry & Biochemistry, The University of California, San Diego, La Jolla, California 92093
Editorial Board:
Editorial Board David R. Kearns Advisory Board L. Moroder
Norma M. Allewell Department of Chemistry E. D. T. Atkins F. Naider
Department of Biochemistry University of California, San Diego R. L. Baldwin W. Olson
University of Minnesota La Jolla, California 92093 E. Benedetti E. Peggion
St. Paul, MN 55108 J. A. McCammon D. L. Beveridge B. M. Pettitt
Kenneth J. Breslauer Department of Chemistry and V. Bloomfield M. T. Record, Jr.
Department of Chemistry Biochemistry J. S. Cohen G. Rose
Rutgers University University of California, San Diego D. M. Crothers S. Sakakibara
Piscataway, New Jersey 08855 La Jolla, California 92093-0343 K. A. Dill J. Schellman
George J. Thomas, Jr. D. Eisenberg H. A. Scheraga
C. Allen Bush
School of Biological Sciences E. L. Elson P. Schiller
Department of Chemistry and
University of Missouri-Kansas City G. Fasman J. D. Simon
Biochemistry
Kansas City, Missouri 64110 L. Gierasch A. Stone
University of Maryland
David E. Wemmer A. Hagler I. Tinoco
Baltimore, Maryland 21228
Department of Chemistry W. C. Johnson G. Van Binst
David A. Case
University of California R. Kaptein K. Wiithrich
Department of Molecular Biology, Berkeley, California 94720 I. Karle B. H. Zimm
MB2 M. Karplus
Research Institute of Scripps Clinic Founding Editors H. Kessler
La Jolla, California 92037 Elkan Blout
P. Kollman
Charles M. Deber Harvard Medical School S. Krimm
Biochemistry Department Boston, Massachusetts 02115 I. Kuntz, Jr.
Ephraim (Katchalski)
Hospital for Sick Children W. L. Mattice
Katzir
Toronto, Ontario M5G 1X8, Canada
The Weizmann Institute of Science
Rehovot, Israel
Cover Illustrations: (Structure of the extracellular endonuclease from Serratia marcescens with B-DNA modeled in the active site) courtesy of Mitchell
Miller and Kurt Krause, University of Houston.
Ethan Pavlo, Editorial Production, John Wiley
Biopolymers (ISSN: 0006-3525) Volumes 38-40 are published 18 times, monthly except copies will be accepted only after the following issue has been received. Please enclose a copy of
semi-monthly in December 1995, February, April, June, August, and October 1996, by the mailing label. Missing copies will be supplied when losses have been sustained in transit
John Wiley & Sons, Inc., 605 Third Avenue, New York, NY 10158. and where reserve stock permits. Please allow four weeks for processing a change of address.
Copyright © 1996 John Wiley & Sons, Inc. All rights reserved. No part of this publica- For subscription inquiries, please call 212-850-6645 or e-mail: [email protected].
tion may be reproduced in any form or by any means, except as permitted under section Postmaster: Send address changes to Biopolymers, Susan Malawski, Director,
107 or 108 of the 1976 United States Copyright Act, without either the prior written per- Subscription Fulfillment and Distribution, Subscription Department, John Wiley & Sons,
mission of the publisher, or authorization through the Copyright Clearance Center, 222 Inc., 605 Third Avenue, New York, N.Y. 10158.
Rosewood Drive, Danvers, MA 01923, [phone], fax [phone]. Periodicals Advertising Sales: Inquiries concerning advertising should be forwarded to Susan Levey;
postage paid at New York, NY, and at additional mailing offices. Biopolymers (Peptide Advertising Sales, John Wiley & Sons, 605 Third Ave., New York, NY 10158; (212) 850-
Science) (Vol. 40, numbers 1-6) will be sent via standard mail. 8832. Advertising Sales, European Contact: Michael Levermore, Advertising Sales Manager,
The code and copyright notice appearing at the bottom of the first page of an item in the John Wiley & Sons, Ltd. Baffins Lane, Chichester, Sussex PO 19 IUD, England.
journal indicate the copyright holder's consent that copies may be made for personal or Reprints: Reprint sales and inquiries should be directed to the customer service depart-
internal use, or for the personal or internal use of specific clients, on the condition that the ment, John Wiley & Sons, Inc., 605 Third Ave., New York, NY 10158. Tel: [phone].
copier pay for copying beyond that permitted by law. Other Correspondence: Address all other correspondence to: Biopolymers, Publisher,
This consent does not extend to other kinds of copying, such as copying for general distri- Interscience Division, Professional, Reference, & Trade Group, John Wiley & Sons, Inc.,
bution, for advertising or promotional purposes, for creating new collective works, or for 605 Third Ave., New York, NY 10158.
resale. Such permission requests and other permission inquiries should be addressed to the Manuscripts should be submitted to the Editor, Murray Goodman, Department of
Permissions Dept. Chemistry and Biochemistry, B-0343, University of California, San Diego, La Jolla, CA
Subscription price: (Volumes 38—40, 1996): $2,646.00 in US, $2,826.00 in Canada or 92093. Information for contributors appears in the first and last issue of each volume.
Mexico, $2,925.00 outside North America. Personal rate (available only if there is an institu- The contents of this journal are indexed in the following: Applied Mechanics Reviews,
tional subscription): $400.00 in US and Canada, $508.00 outside North America. All subscrip- Biological Abstracts, BIOSIS, Chemical Abstracts, Chemical Titles, Current Contents/Life
tions outside US will be sent by air. Subscriptions at the personal rate are available only to indi- Sciences, Engineering Index, Excerpta Medica, Index Medicus, Reference Update, Research
viduals. Payment must be made in US dollars drawn on a US bank. Claims for undelivered Alert (ISI), Science Citation Index (ISI), and SCISEARCH Database (ISI).
This paper meets the requirements of ANSI/NISO Z39.48-1992 (Permanence of Paper).
Biopolymers
Author Index—Volume 39
Abdelkafi, M. See Bouchemal- Cylindrical Peptide Boelens, R. See van Geerestein-
Chibani, N., 549 Structures Formed by Fusing Ujah, E. C., 691
Ablett, S. See Foster, T. J., 51 Left and Right Handed Bouchemal-Chibani, N.
Akabori, S. See Tamaki, M., Helices (Rapid —,; Abdelkafi, M.; Hervé du
129 Communication), 279 Penhoat, C.; Ghomi, M.;
Akinari, Y. See Kaibara, K., 189 Barry, S. I. Turpin, P. Y.:
André, G. —; Gowman, L. M.; Ethier, Characterization of the
—+; Buléon, A.; Vallée, F.; Juy, C. R.: Obtaining the Dynamic Behavior of
M.; Haser, R.; Tran, V.: Concentration-Dependent r(ACC) and r(AAC) with
Amylose Chain Behavior in Diffusion Coefficient from NMR Relaxation Data and
an Interacting Context I. Ultrafiltration Experiments: Both Metropolis Monte
Influence of a Nonchair Application to Hyaluronate, Carlo and Molecular
Ring on the Maltose 1 Dynamics Simulations, 549
Conformations, 737 Berlose, J.-P. See Josien, H., Boué, F. See Renard, D., 149
Andreu, D. See Toiron, C., 537 133 Boyd, M. K. See Pavlik, P. A.,
Antosiewicz, J. Bernini, L. F. See Ragona, L., 615
—; Wlodek, S. T.; McCammon, 653 Breese, K. See Luidens, M. K.,
J. A.: Acetylcholinesterase: Berth, G. 367
Role of the Enzyme’s —,; Dautzenberg, H.; Christensen, Breslauer, K. J. See Chalikian,
Charge Distribution in T. V., 619
B. E.; Rother, G.; Smidsr¢d,
Steering Charged Ligands O.: Physicochemical Studies Bruix, M. See Toiron, C., 537
Toward the Active Site, 85 on Xylinan (Acetan). I. Brunissen, A. See Josien, H.,
Ariyoshi, Y. See Izawa, H., 95; Characterization by Gel 133
Ota, M., 199 Permeation Chromatography Buléon, A. See André, G., 737
Arteca, G. A. on Sepharose Cl-2B Burova, T. V.
Characterization of Global Coupled with Static Light —+; Golubeva, I. A.; Grinberg,
Molecular Shape Transitions Scattering and Viscometry, N. V.; Mashkevich, A. Y.;
Between ‘‘Open’’ and 709 Grinberg, V. Y.; Usov,
“*Closed’’ Protein —,; Dautzenberg, H.; Christensen, A. I.; Navarini, L.; Cesaro,
Conformations, 671 B. E.; Smidsr¢d, O.: A.: Calorimetric Study of
Arteca, G. A. Physicochemical Studies on the Order—Disorder
Characterization of Global Conformational Transition in
Xylinan (Acetan). II.
Molecular Shape Transitions Characterization by Static Succinoglycan, 517
Between ‘‘Open’’ and Light Scattering, 721
“*Closed’’ Protein Berth, G. See Harding, S. E., Caram-Lelham, N.
Conformations, 671 729 —,; Sundeléf, L.-O.: Changes in
Axelos, M. A. V. See Cros, S.,
Beyermann, M. See Rothemund, the Polyelectrolyte-
339; Renard, D., 149
S., 207 Amphiphile Interaction Due
Bienert, M. See Rothemund, S., to Helix-Coil Transition
Balaram, P. See Banerjee, A.., 207 Induced by Specific
279; Karle, I. L., 75 Bodkin, M. J. Counterions or Variations in
Banerjee, A. —; Goodfellow, J. M.: Temperature, 387
—+; Rao Raghothama, S.; Karle, Hydrophobic Solvation in Cesaro, A. See Burova, T. V.,
I. L.; Balaram, P.: Aqueous Trifluoroethanol 517
Ambidextrous Molecules: Solution, 43 Chalikian, T. V.
Biopolymers, Vol. 39, 875-880 (1996)
876 AUTHOR INDEX
—,; Breslauer, K. J.: On Volume Monoclonal Anti-Substance Sequences by Circular
Changes Accompanying P Antibody, 67 Dichroism, Ultraviolet
Conformational Transitions Dib, R. absorbance, and Optical
of Biopolymers (Rapid —; Chobert, J. M.; Rotation, 859
Communication), 619 Dalgalarrondo, M.; Haertlé, Figge, J. See Luidens, M. K.,
Chalmers, G. W. G. See Lillie, T.: Secondary Structure 367
M. A., 627 Changes and Peptic Formaggio, F. See Monaco, V.,
Chassaing, G. See Déry, O., 67; Hydrolysis of B- 31
Josien, H., 133 Lactoglobulin Induced by Foster, T. J.
Chobert, J. M. See Dib, R., 23 Diols, 23 —,; Ablett, S.; McCann, M.;
Christensen, B. E. See Berth, Dill, K. A. See Wallace, D. G., Gidley, M. J.: Mobility-
G., 709, 721; Harding, S. E., 115 Resolved '*C-NMR
729 Dua, R. K. See Mosberg, H. I., Spectroscopy of Primary
Célfen, H. See Harding, S. E., 287 Plant Cell Walls, 51
729 Dumy, P. Fraden, S. See Tang, J., 13
Constantine, K. L. —,; Eggleston, L. M.; Esposito, Friedrichs, M. S. See
—; Friedrichs, M. S.; Stouch, G.: Nicula, S.; Mutter, M.: Constantine, K. L., 591
T. R.: Extensive Molecular Solution Structure of Fukada, H. See Kitamura, S.,
Dynamics Simulations of a Regioselectively 407
6-Hairpin-Forming Peptide, Addressable Functionalized Fukuwatari, T. See Ota, M..,
591 Templates: An NMR and 199
Convert, O. See Josien, H., 133 Restrained Molecular
Couraud, J. Y. See Déry, O., 67 Dynamics Investigation, 297
Garnier, C. See Cros, S., 339
Crisma, M. See Monaco, V., 31
Gavuzzo, E. See Torrini, I., 327
Cros, S. Eggleston, D. S. See Monaco,
Ghomi, M. See Bouchemal-
—,; Garnier, C.; Axelos, V., 31
Chibani, N., 549
M. A. V.; Imberty, A.; Eggleston, L. M. See Dumy, P.,
Gidley, M. J. See Foster, T. J.,
Pérez, S.: Solution 297
51
Conformations of Pectin Elcock, A. H.
Golubeva, I. A. See Burova,
Polysaccharides: —; Rodger, A.; Richards, W. G.:
evi ET
Determination of Chain Theoretical Studies of the
Goodfellow, J. M. See Bodkin,
Characteristics by Small Intercalation of 9-
M. J., 43
Angle Neutron Scattering, Hydroxyellipticine in DNA,
Goodman, M. See Feng, Y., 859
Viscometry, and Molecular 309
Gosline, J. M. See Lillie, M. A.,
Modeling, 339 Engelsen, S. B.
627, 641
Cros, S. See Engelsen, S. B., —; Cros, S.; Mackie, W.; Pérez,
Goto, N. K. See Liu, L.-P., 465
417 S.: A Molecular Builder for
Gowman, L. M. See Barry, S.
Carbohydrates: Application
I., 1
Dalgalarrondo, M. See Dib, R., to Polysaccharides and
Grant, B. D. See Tsigelny, I.,
23 Complex Carbohydrates, 417
353
Dallai, R. See Ragona, L., 653 Esposito, G. See Dumy, P., 297
Grassi, J. See Déry, O., 67
Dautzenberg, H. See Berth, G., Ethier, C. R. See Barry, S. I., 1
Grinberg, N. V. See Burova,
709, 721
Vee SIT
Davenport, V. G. See Rothwarf, Fairchild, S. B. See Pachter, R..,
Grinberg, V. Y. See Burova,
D. M., 531 377
EV. SU
Deber, C. M. See Liu, L.-P., Falch, B. H. See Kitamura, S.,
465 407
Déry, O. Feng, Y. Haertlé, T. See Dib, R., 23
—-; Josien, H.; Grassi, J.; —; Melacini, G.; Taulane, J. P.; Harding, S. E.
Chassaing, G.; Couraud, Goodman, M.: Collagen- —; Jumel, K.; Célfen, H.; Berth,
J. Y.; Lavielle, S.: Use of Based Structures Containing G.; Christensen, B. E.;
Conformationally the Peptoid Residue N- Hartmann, J.:
Constrained Peptides for a Isobutylglycine (Nleu): Physicochemical Studies on
Topographical Analysis of Synthesis and Biophysical Xylinan (Acetan). Part III.
the Combining Site of a Studies of Gly-Pro-Nleu Hydrodynamic
AUTHOR INDEX 877
Characterization by Elastin Model Polypeptide, —+; Chalmers, G. W. G.; Gosline,
Analytical (Val-Pro-Gly-Val-Gly),, 189 J. M.: Elastin Dehydration
Ultracentrifugation and Kaptein, R. See van Geerestein- through the Liquid and the
Dynamic Light Scattering, Ujah, E. C., 691 Vapor Phase: A Comparison
729 Karle, I. L. of Osmotic Stress Models,
Hartmann, J. See Harding, —,; Rao, R. B.; Kaul, R.; Prasad, 627
S. E., 729 S.; Balaram, P.: Peptide —+; Gosline, J. M.: Swelling and
Harvey, S. C. See Sprous, D., Design: Crystal Structure of Viscoelastic Properties of
243; Tan, R. K.-Z., 259 a Helical Peptide Module Osmotically Stressed
Haser, R. See André, G., 737 Attached to a Potentially Elastin, 641
Hayashi, Y. See Miura, N., 183 Nonhelical Amino Terminal Linthicum, D. S. See
Hermans, J. See Wang, L., 479 Segment, 75 Viswanathan, M., 395
Hervé du Penhoat, C. See Karle, I. L. See Banerjee, A., Li, S.-C. See Liu, L.-P., 465
Bouchemal-Chibani, N., 549 279 Liu, K.
Hirano, T. See Kitamura, S., Kaul, R. See Karle, I. L., 75 —-; Sasisekharan, V.; Miles,
407 Kerr, I. D. H. T.; Raghunathan, G.:
Huber, T. —; Son, H. S.; Structure of Py~- Pu- Py
—+; Torda, A. E.; van Gunsteren, Sankararamakrishnan, R.; DNA Triple Helices. Fourier
W. F.: Optimization Sansom, M. S. P.: Molecular Transforms of Fiber-Type
Methods for Conformational Dynamics Simulations of X-ray Diffraction of Single
Sampling Using a Isolated Transmembrane Crystals, 573
Boltzmann-Weighted Mean Helices of Potassium Liu, L.-P.
Field Approach, 103 Channels, 503 —-; Li, S.-C.; Goto, N. K.; Deber,
Kitamura, S. C. M.: Threshold
—,; Hirano, T.; Takeo, K.; Hydrophobicity Dictates
Imberty, A. See Cros, S., 339
Fukada, H.; Takahashi, K.; Helical Conformations of
Izawa, H.
Falch, B. H.; Stokke, B. T.: Peptides in Membrane
—; Ota, M.; Kohmura, M.;
Conformational Transitions Environments, 465
Ariyoshi, Y.: Synthesis and
of Schizophyllan in Aqueous Lomize, A. L. See Mosberg,
Characterization of the
Alkaline Solution, 407 H. I., 287
Sweet Protein Brazzein, 95
Kodama, H. See Kaibara, K.., Longhi, R. See Ragona, L., 653
189 Lopez, J. A. See Toiron, C., 537
Josien, H. Kohmura, M. See Izawa, H., 95 Lozzi, L. See Ragona, L., 653
—+; Convert, O.; Berlose, J.-P.; Kolbe, A. See Plass, M., 681 Lucente, G. See Torrini, I., 327
Sagan, S.; Brunissen, A.; Kondo, M. See Kaibara, K., 189 Luidens, M. K.
Lavielle, S.; Chassaing, G.: Krause, E. See Rothemund, S., —-; Figge, J.; Breese, K.; Vajda,
Topographic Analysis of the 207 S.: Predicted and
S; Binding Subsite of the Kuczera, K. Trifluoroethanol-Induced a-
Tachykinin Neurokinin-| Free Energy Simulations of Axial Helicity of Polypeptides,
Receptor, 133 Contacts in Sickle-Cell 367
Josien, H. See Déry, O., 67 Hemoglobin, 221 Lupo, J. A. See Pachter, R., 377
Jumel, K. See Harding, S. E., Kuroda, K. See Sawai, H., 173
729 Mackie, W. See Engelsen, S. B.,
Juy, M. See André, G., 737 Lamy, A. V. 417
—+; Souaille, M.; Smith, J. C.: Marchini, D. See Ragona, L.,
Kaibara, K. Simulation Evidence for 653
—; Akinari, Y.; Okamoto, K.; Experimentally Detectable Mariani, M. See van Geerestein-
Uemura, Y.; Yamamoto, S.; Low-Temperature Ujah, E. C., 691
Kodama, H.; Kondo, M.: Vibrational Inhomogeneity Mashimo, S. See Miura, N., 183
Characteristic Interaction of in a Globular Protein, 471 Mashkevich, A. Y. See Burova,
Ca** Ions with Elastin Lavielle, S. See Déry, O., 67; FV... SEF
Coacervate: Ion Transport Josien, H., 133 Mastropietro, G. See Torrini, L.,
Study Across Coacervate Lefebvre, J. See Renard, D., 149 327
Layers of a-Elastin and Lillie, M. A. Mazza, F. See Torrini, I., 327
878 AUTHOR INDEX
McCammon, J. A. See O’Connell, T. See Wang, L., Ragona, L.
Antosiewicz, J., 85 479 —; Molinari, H.; Zetta, L.;
McCann, M. See Foster, T. J., Okamoto, K. See Kaibara, K.., Longhi, R.; Marchini, D.;
51 189 Dallai, R.; Bernini, L. F.;
Melacini, G. See Feng, Y., 859 Olsen, K. W. See Pavlik, P. A., Lozzi, L.; Scarselli, M.;
Melero, J. A. See Toiron, C., 615 Niccolai, N.: CD and NMR
537 Ota, M. Structural Characterization
Miles, H. T. See Liu, K., 573 —; Tonosaki, K.; Miwa, K.; of Ceratotoxins, Natural
Miura, N. Fukuwatari, T.; Ariyoshi, Peptides with Antimicrobial
—+; Hayashi, Y.; Mashimo, S.: Y.: Synthesis and Activity, 653
Hinge-Bending Deformation Characterization of the Rao Raghothama, S. See
of Enzyme Observed by Sweetness-Suppressing Banerjee, A., 279
Microwave Dielectric Polypeptide Gurmarin and Rao, R. B. See Karle, I. L., 75
Measurement, 183 ent-Gurmarin, 199 Reese, H. R. See Schellman,
Miwa, K. See Ota, M., 199 Ota, M. See Izawa, H., 95 J. A., 161
Molinari, H. See Ragona, L., Ozaki, H. See Sawai, H., 173 Renard, D.
653 —; Axelos, M. A. V.; Boué, F.;
Monaco, V. Pachter, R. Lefebvre, J.: ‘“Ordered’’
—,; Formaggio, F.; Crisma, M.; —-; Fairchild, S. B.; Lupo, J. A.; Structure in Solutions and
Toniolo, C.; Shui, X.; Wade, W.: Biomolecular Gels of a Globular Protein
Eggleston, D. S.: Structure Prediction at a as Studied by Small Angle
Crystallographic Structure of Low Resolution Using a Neutron Scattering, 149
a Multiple 6-Turn Neural Network and the Richards, W. G. See Elcock,
Containing, Glycine-Rich Double-Iterated Kalman A. H., 309
Heptapeptide: A Synthetic Filter Technique, 377 Rivas, G. See Toiron, C., 537
Precursor of the Paradisi, M. P. See Torrini, I., Rodger, A. See Elcock, A. H.,
Lipopeptaibol Antibiotic 327 309
Trichodecenin I, 31 Pavlik, P. A. Rothemund, S.
Mosberg, H. I. —+; Boyd, M. K.; Olsen, K. W.: —,; Krause, E.; Beyermann, M.;
—; Dua, R. K.; Pogozheva, I. D.; Molecular Dynamics of a Bienert, M.; Sykes, B. D.;
Lomize, A. L.: Development Hemoglobin Crosslinking Sonnichsen, F. D.:
of a Model for the 6-Opioid Reaction (Research Assignment of the Helical
Receptor Pharmacophore. 4. Communication), 615 Structure in Neuropeptide Y
Residue 3 Peng, J.-L. See Rothwarf, by HPLC Studies of
Dehydrophenylalanine D. M., 531 Methionine-Replacement
Analogues of Tyr-c[D-Cys- Pérez, S. See Cros, S., 339; Analogues and 'H-NMR
Phe-b-PenJOH (JOM-13) Engelsen, S. B., 417 Spectroscopy, 207
Confirm Required gauche Plass, M. Rother, G. See Berth, G., 709
Orientation of Aromatic —; Kolbe, A.: Influence of Rothwarf, D. M.
Side Chain, 287 Chirality, Amino Acid —+; Davenport, V. G.; Shi, P.-T.;
Muramatsu, I. See Tamaki, M., Sequence, and Protecting Peng, J.-L.; Scheraga, H. A.:
129 Groups on the Use of Sequence Specific
Mutter, M. See Dumy, P., 297 Intramolecular Interaction Tri-Block Copolymers to
Behavior of Dipeptide and Determine the Helix-
Tripeptide Derivatives, 681 Forming Tendencies of
Nakatani, H. Pledger, D. W. See Amino Acids, 531
Monte Carlo Simulation of Viswanathan, M., 395
Multiple Attack Mechanism Pochetti, G. See Torrini, I., 327 Sagan, S. See Josien, H., 133
of a-Amylase, 665 Pogozheva, I. D. See Mosberg, Sankararamakrishnan, R. See
Navarini, L. See Burova, T. V., H. I., 287 Kerr, I. D., 503
517 Prasad, S. See Karle, I. L., 75 Sansom, M. S. P. See Kerr,
Niccolai, N. See Ragona, L., 653 I. D., 503
Nicula, S. See Dumy, P., 297 Raghunathan, G. See Liu, K., Sasisekharan, V. See Liu, K..,
573 573
AUTHOR INDEX = 879
Sawai, H. Sundelof, L.-O. See Caram- E.; Mazza, F.; Pochetti, G.;
—; Kuroda, K.; Seki, J.; Ozaki, Lelham, N., 387 Traniello, S.; Spisani, S.:
H.: Conformational and Sykes, B. D. See Rothemund, S., Modified Chemotactic
Stacking Properties of 3’-5’ 207 Peptides: Synthesis,
and 2’-5’ Linked Conformation, and Activity
Oligoribonucleotides Studied of HCO-Thp-Ac,c-Phe-
by CD, 173 Takahashi, K. See Kitamura, S., OMe, 327
Scarselli, M. See Ragona, L., 407 Traniello, S. See Torrini, I., 327
653 Takeo, K. See Kitamura, S., 407 Tran, V. See André, G., 737
Schellman, J. A. Tamaki, M. Tropsha, A. See Wang, L., 479
—-; Reese, H. R.: Extensions to —; Akabori, S.; Muramatsu, L.: Tsigelny, I.
the Theory of Intercalation, Conformation of a Cyclic —+; Grant, B. D.; Taylor, S. S.;
161 Tetrapeptide Containing Ten Eyck, L. F.: Catalytic
Scheraga, H. A. See Rothwarf, Two Proline Residues, 129 Subunit of cAMP-Dependent
D. M., 531 Tang, J. Protein Kinase: Electrostatic
Seki, J. See Sawai, H., 173 —,; Fraden, S.: Nonmonotonic Features and Peptide
Shiau, L.-D. Temperature Dependence of Recognition, 353
A Systematic Analysis of the Flexibility of Turpin, P. Y. See Bouchemal-
Average Molecular Weights Bacteriophage fd, 13 Chibani, N., 549
and Gelation Conditions for Tan, R. K.-Z.
Branched Immune —-,; Sprous, D.; Harvey, S. C.: Uemura, Y. See Kaibara, K..,
Complexes: The Interaction Molecular Dynamics 189
between a Multivalent Simulations of Small DNA Usov, A. I. See Burova, T. V.,
Antigen with Distinct Plasmids: Effects of 517
Epitopes and Many Sequence and Supercoiling
Different Types of Bivalent on Intramolecular Motions, Vajda, S. See Luidens, M. K.,
Antibodies, 445 259 367
Shi, P.-T. See Rothwarf, D. M., Tan, R. K.-Z. See Sprous, D., Vakser, I. A.
531 243 Low-Resolution Docking:
Shui, X. See Monaco, V., 31 Taulane, J. P. See Feng, Y., 859 Prediction of Complexes for
Smidsr¢d, O. See Berth, G., Taylor, S. S. See Tsigelny, L., Underdetermined Structures,
709, 721 353 455
Smith, J. C. See Lamy, A. V., Ten Eyck, L. F. See Tsigelny, Vallée, F. See André, G., 737
471 I., 353 van Geerestein-Ujah, E. C.
Son, H. S. See Kerr, I. D., 503 Tetin, S. Y. See Viswanathan, —; Mariani, M.; Vis, H.;
Sonnichsen, F. D. See M., 395 Boelens, R.; Kaptein, R.:
Rothemund, S., 207 Toiron, C. Use of Graph Theory for
Souaille, M. See Lamy, A. V., —; Lopez, J. A.; Rivas, G.; Secondary Structure
471 Andreu, D.; Melero, J. A.; Recognition and Sequential
Spisani, S. See Torrini, I., 327 Bruix, M.: Conformational Assignment in Heteronuclear
Sprous, D. Studies of a Short Linear (°C, '°N) NMR Spectra:
—,; Tan, R. K.-Z.; Harvey, S. C.: Peptide Corresponding to a Application to HU Protein
Molecular Modeling of Major Conserved from Bacillus
Closed Circular DNA Neutralizing Epitope of stearothermophilus, 691
Thermodynamic Ensembles, Human Respiratory van Gunsteren, W. F. See
243 Syncytial Virus Fusion Huber, T., 103
Sprous, D. See Tan, R. K.-Z., Glycoprotein, 537 Vis, H. See van Geerestein-Ujah,
259 Toniolo, C. See Monaco, V., 31 E. C., 691
Stokke, B. T. See Kitamura, S., Tonosaki, K. See Ota, M., 199 Viswanathan, M.
407 Torda, A. E. See Huber, T., 103 —+; Subramaniam, S.; Pledger,
Stouch, T. R. See Constantine, Torrini, I. D. W.; Tetin, S. Y.;
K. L., 591 —-; Zecchini, G. P.; Paradisi, Linthicum, D. S.: Modeling
Subramaniam, S. See M. P.; Lucente, G.; the Structure of the
Viswanathan, M., 395 Mastropietro, G.; Gavuzzo, Combining Site of an
880 AUTHOR INDEX
Antisweet Taste Ligand Wang, L. Binding Characteristics and
Monoclonal Antibody —+; O’Connell, T.; Tropsha, A.; Solution Conformation, 491
NC10.14, 395 Hermans, J.: Energetic Wlodek, S. T. See Antosiewicz,
Decomposition of the a- J., 85
Wade, W. See Pachter, R., 377
Wallace, D. G. Helix—Coil Equilibrium of a Yamamoto, S. See Kaibara, K..,
—-; Dill, K. A.: Treating Dynamic Model System, 479 189
Sequence Dependence of Wellman, S. E. Zecchini, G. P. See Torrini, I.,
Protein Stability in a Mean- Carboxyl-Terminal Peptides from 327
Field Model, 115 Histone H1 Variants: DNA Zetta, L. See Ragona, L., 653
Biopolymers
Subject Index to Volume 39
Aggregation, 149 Catalytic mechanism, 353 Cyclic peptide, 129
Alanine polypeptides, 479 CD spectra, 491 Cyclic peptides, as
Alpha-helix, 43 Cellulose structure, in cell walls, regioselectively addressable
Amino acid sequence, 115 51 functionalized templates
a-Aminoisobutyryl peptide, 75 Ceratotoxins, 653 (RAFT), 297
6-Aminovaleric acid, 769 Ceratotoxins, and NMR studies, Cyclic peptides, CD studies of,
Amitriptyline, adsorption to k- 653 297
carrageenan, desorption from Ceratotoxins, by circular Cyclic peptides, Restrained
k-carrageenan, 387 dichroism, 653 Molecular Dynamics of, 297
Amphiphile-«-carrageenan Ceratotoxins, structure Cyclic peptides, solution
interaction, 387 determination, 653 structure of by NMR, 297
a-Amylase, 665 Chemotaxis, 327 C*-tetrasubstituted amino acids,
Amylopectin, 665 Circular dichroism, 173, 367, 327
Amylose, 665 465, 531, 549
Amylose propagation, 737 Coacervation, 189 De Novo design, 43
Analytical ultracentrifugation, Coefficient, 729 Dehydroamino acid, 287
729 Combining site structure, 395 Dehydrophenylalanine, 287
Antigen-antibody complex, 445 Compact configurations, 115 Diastereoisomers, 681
Antimicrobial peptides, 653 Complex carbohydrates, 417 Dielectric relaxation peak, 183
Average molecular weight, 445 Computer simulations, 221 Differential scanning calorimetry,
Concentration-dependent mutual 517
Bacillus stearothermophilus, 691 diffusion coefficient, 1 Diffusion, 85
Base-base stacking, 173 Conformation, 173, 327 Diols, 23
Base-sugar stacking, 173 Conformational analysis of Dipropylglycine peptide, 75
Binding isotherm, 161 maltose, 737 DNA plasmids, 259
Biomechanics, 627 Conformational search, 103 DNA supercoiling, 243
Birefringence, magnetic-field Conformational transition, 517 DNA triple helices, 573
induced, 13 Conformational transitions, 619 DNA-binding proteins, 491
Birefringence, of fd solutions, 13 Conformational transitions of Double iterated Kalman filter,
Block copolymer synthesis, 531 schizophyllan in aqueous 377
Blood substitutes, 615 alkaline solution, 407 DSC study of schizophyllan in
Boltzmann distribution, 103 Conformationally and aqueous alkaline solution,
Branched complex, 445 configurationally restricted 407
Brazzein, synthesis of, 95 rotameric probes of Dynamic light scattering, 729
Brownian dynamics, 85 phenylalanine, 133 Dynamic Zimm plot, 729
Conformations, 31
'5C-NMR, 51 Constrained peptides, 67 Elastin, 189, 627, 641
Ca’* binding, 189 Cotton—Mouton effect, of fd Elastin model peptide, 189
Capillary viscometry, 709 virus suspensions, 13 Eiectron microscopic observation
Carbohydrate structure, 417 Crambin, 377 of renatured schizophyllan,
Carbon and proton longitudinal Cross polarization and magic 407
relaxation rates, 549 angle spinning, 51 Electrostatic interaction, 161
«-Carrageenan, charge density, Crosslinking, 615 Electrostatic interactions, 221
length per unit charge, helix- Cross-relaxation rates, 549 Electrostatics, 85, 353
coil transition, 387 Crystal structure, 279, 327 Energy calculations, 133
Biopolymers, Vol. 39, 881—883 (1996)
882 SUBJECT INDEX
Enthalpy, 221 virus fusion (F) Mobility-resolved NMR
Entropy, 221 glycoprotein, 537 spectroscopy, 51
Enzyme, 183 Hyaluronate, | Modeling, 445
Enzyme mechanism, 665 Hydrogen bonds, 479 Molecular aggregation, 221
Ethidium, 161 Hydrophobic effect, 479 Molecular association, 221
Extended conformation, 729 Hydrophobic solvation, 43 Molecular associations, in cell
Hydrophobicity, 465 walls, 51
Molecular dynamics, 43, 103,
Far-infrared spectroscopy, 471
Induced fit, 671 243, 259, 503, 549, 615
fd virus, liquid crystal phases of,
Inelastic neutron scattering, 471 Molecular dynamics (MD)
13
Intercalation, 161 simulations, 309
fd virus, temperature dependence
of flexibility of, 13 Intercalative binding, of 9- Molecular dynamics simulation,
hydroxyellipticine to DNA, 471, 591
Fiber-type x-ray diffraction, 573
309 Molecular dynamics simulations,
Flexible forms of glucopyranose,
Internal strain energy, 221 221
737
Intramolecular hydrogen bonds, Molecular mechanics, 259, 417,
Folding changes, 23
681 549, 737
Formylpeptides, 327
Intramolecular motions, 259 Molecular modeling, 339
Fourier transforms, 573
Intramolecular transition of triple Molecular organization, in cell
Fractal, 149
helix of schizophyllan, 407 walls, 51
Free energy, 221
Intrinsic viscosity, 729 Molecular recognition algorithm,
Free energy convergence, 221
Inward rectifier, 503 455
Free energy decompositions, 221
Ion channel, 503 Molecular simulation, 43
Free energy simulations, 221,
Molecular swivel, 503
479
Kinked helix, 503 Monoclonal antibody fragment,
KXALLP helix stabilizer motif, 395
Gas permeation chromatography
653 Monoclonal anti-substance P
(GPC), 709
antibody, 67
Gel formation, 445
B-Lactoglobulin, 23, 149 Monte Carlo, 665
Gel permeation chromatography,
Lattice models, 115 Multiangle laser light scattering,
729
Ligands, conformationally 709
Gelation, 149
constrained, 287 Multiple attack, 665
Globular protein, 149
Ligand-receptor interaction, 455
Glycine, 503
Light scattering data, 721 Neighbor exclusion, 161
Graph theory, 691
2'-5’ Linkage, 173 Neural network, 377
Gurmarin, synthesis of, 199
3’-5’ Linkage, 173 Neuropeptide Y, 207
Linkage isomers, 173 Neutron scattering, 149
'H and '*C NMR spectra, 549 Liquid crystal, phases of fd NMR analysis in methanol, 133
'H-NMR spectroscopy, 207 virus, 13 Nonbonded interactions, 221
H1 histones, 491 Local enhanced sampling, 103 Normal mode analysis, 471
Hairpin-forming peptide, 591 Lock-and-key concepts, 455 Nuclear Overhauser effect
Helical conformation, 75 spectroscopy (NOESY)-type
Helix propensity, 531 Magnetic field induced spectra, 691
Helix reversal, 279 birefringence, of fd virus Nucleic acids, 549
Helix-coil transition, effect of suspensions, 13
counterions, effect of Maltooligosaccharides, 665 Oligopeptides, 681
temperature, 387 Membrane-mimetics, 465 Oligoribonucleotides, 173, 549
Hemoglobin, 221, 615 Metastable conformational states, Onsager theory, of isotropic—
Heptapeptide, 31 591 nematic transition, 13
High performance liquid Methionine-replacement Open and closed conformations,
chromatography (HPLC), analogues, 207 671
207 Metropolis Monte-Carlo Opioid receptor, delta, 287
Hinge-Bending deformation, 183 simulation, 549 Opioids, delta, pharmacophore
Human respiratory syncytial Mixed chirality, 279 model, 287