Biophysical Chemistry 1997: Vol 67 Index

9 Pages·1997·1.9 MB·English

oe Biophysical
ys Chemistry
ie
LSEVIER
Biophysical Chemistry 67 (1997) 293-294
Author Index to Volume 67
Alessi, R., Cacchione, S., De Santis, P., Fua, M. and Savino, M. Eimer, W., see Tohl, J. (67) 177
Multiple nucleosome positioning with unique rotational phas- Engelke, M., Jessel, R., Wiechmann, A. and Diehl, H.A.
ing on multimers of the light-responsive elements of pea Effect of inhalation anaesthetics on the phase behaviour, per-
rbcS-3A and rbcS-3.6 genes: comparison between experimen- meability and order of phosphatidylcholine bilayers (67) 127
tal and theoretical mapping (67) 151
Apostolova, E., see Dobrikova, A. (67) 239 Favilla, R., Parisoli, A. and Mazzini, A.
Arcovito, G., Bassi, F.A., De Spirito, M., Di Stasio, E. and Sa- Alkaline denaturation and partial refolding of pepsin investi-
betta, M. gated with DAPI as an extrinsic probe (67) 75
Dynamic light scattering study of fine semiflexible fibrin Favilla, R., see Mazzini, A. (67) 65
networks (67) 287 Fua, M., see Alessi, R. (67) 151
Bai, C., see Lee, I. (67) 159 Grieve, S.M., see Torres, A.M. (67) 187
Bassi, F.A., see Arcovito, G. (67) 287 Gruner, S.M., see Scarlata, S. (67) 269
Bastian, M. and Sigel, H. Gryczynski, I., see Malak, H. (67) 35
The self-association of flavin mononucleotide (FMN7*~ ) as
determined by 'H NMR shift measurements (67) 27
Hermetter, A., see Hianik, T. (67) 221
Biaggi, M.H., Riske, K.A. and Lamy-Freund, M.T.
Hianik, T., Rybar, P., Kostner, G.M. and Hermetter, A.
Melanotropic peptides—lipid bilayer interaction. Comparison
Molecular acoustic as a new tool for the study of biophysical
of the hormone a-MSH to a biologically more potent analog
properties of lipoproteins (67) 221
(67) 139
Bonincontro, A., Mari, C., Mengoni, M. and Risuleo, G.
Imafuku, Y., Toyoshima, Y.Y. and Tawada, K.
A study of the dielectric properties of E. coli ribosomal RNA
Length dependence of displacement fluctuations and velocity
and proteins in solution (67) 43
in microtubule sliding movement driven by sea urchin sperm
Brand, L., see Packard, B.Z. (67) 167
outer arm $6 dynein in vitro (67) 117
Busheva, M., see Dobrikova, A. (67) 239
Incerti, M., see Mazzini, A. (67) 65
Cacchione, S., see Alessi, R. (67) 151
Candeias, L.P., Wardman, P. and Mason, R.P. Jessel, R., see Engelke, M. (67) 127
Jia, Z., see Li, W. (67) 281
The reaction of oxygen with radicals from oxidation of trypto-
phan and indole-3-acetic acid (67) 229
Castellano, F.N., see Malak, H. (67) 35 Kawamura, M., see Ohmori, T. (67) 51
Chapman, B.E., see Torres, A.M. (67) 187 Kellermayer, M.S.Z.
Delayed dissociation of in vitro moving actin filaments from
Deng, W., see Lee, I. (67) 159 heavy meromyosin induced by low concentrations of Triton
De Santis, P., see Alessi, R. (67) 151 X-100 (67) 199
De Spirito, M., see Arcovito, G. (67) 287 Khoshkbarchi, M.K., see Soto-Campos, A.M. (67) 97
Diehl, H.A., see Engelke, M. (67) 127 Khrapunov, S.N., see Sivolob, A. (67) 85
Dioumaev, A.K. Komoriya, A., see Packard, B.Z. (67) 167
Evaluation of intrinsic chemical kinetics and transient product Kooli, K., see Raukas, E. (67) 245
spectra from time-resolved spectroscopic data (67) | Kostner, G.M., see Hianik, T. (67) 221
Di Stasio, E., see Arcovito, G. (67) 287 Kuchel, P.W., see Torres, A.M. (67) 187
Dobrikova, A., Taneva, $.G., Busheva, M., Apostolova, E. and Kumosinski, T.F., see Nassar, A.-E.F. (67) 107
Petkanchin, I.
Surface electric properties of thylakoid membranes from Ara- Lakowicz, J.R., see Malak, H. (67) 35
bidopsis thaliana mutants (67) 239 Lamy-Freund, M.T., see Biaggi, M.H. (67) 139
294 Author Index to Volume 67
Lee, I., Deng, W., Yang, L., Wang, C. and Bai, C. Rusling, J.F., see Nassar, A.-E.F. (67) 107
Biphasic transitions of a hairpin hexanucleotide triplex DNA Rybar, P., see Hianik, T. (67) 221
(67) 159
Li, W., Zheng, R., Jia, Z., Zou, Z. and Lin, N.
Repair effect of phenylpropanoid glycosides on thymine radi- Sabetta, M., see Arcovito, G. (67) 287
cal anion induced by pulse radiolysis (67) 281 Savino, M., see Alessi, R. (67) 151
Lillo, C., see Ruoff, P. (67) 59 Scarlata, S. and Gruner, S.M.
Lin, N., see Li, W. (67) 281 Role of phosphatidylethanolamine lipids in the stabilization of
protein—lipid contacts (67) 269
Malak, H., Castellano, F.N., Gryezynski, I. and Lakowicz, J.R. Schiitz, H., see Raukas, E. (67) 245
Two-photon excitation of ethidium bromide labeled DNA (67) Shapiro, B.E. and Qian, H.
35 A quantitative analysis of single protein—ligand complex sepa-
Mari, C., see Bonincontro, A. (67) 43 ration with the atomic force microscope (67) 211
Mason, R.P., see Candeias, L.P. (67) 229 Sigel, H., see Bastian, M. (67) 27
Mazzini, A., Incerti, M. and Favilla, R. Sivolob, A. and Khrapunov, S.N.
Interaction of DAPI with pepsin as a function of pH and ionic Electrostatic contribution to the bending of DNA (67) 85
strength (67) 65 Soto-Campos, A.M., Khoshkbarchi, M.K. and Vera, J.H.
Mazzini, A., see Favilla, R. (67) 75 Activity coefficients of the electrolyte and the amino acid in
Mengoni, M., see Bonincontro, A. (67) 43 water + NaNO, + glycine and water + NaCl + DL-methionine
systems at 298.15 K (67) 97
Nakaiwa, M., see Ohmori, T. (67) 51
Nassar, A.-E.F., Rusling, J.F. and Kumosinski, T.F.
Salt and pH effects on electrochemistry of myoglobin in thick Taneva, S.G., see Dobrikova, A. (67) 239
films of a bilayer-forming surfactant (67) 107 Tawada, K., see Imafuku, Y. (67) 117
Tohl, J. and Eimer, W.
Ohmori, T., Nakaiwa, M., Yamaguchi, T., Kawamura, M. and Interaction of a G-DNA quadruplex with mono- and divalent
Yang, R.Y.K. cations. A force field calculation (67) 177
Self-sustained pH oscillations in a compartmentalized enzyme Toptygin, D.D., see Packard, B.Z. (67) 167
reactor system (67) 51 Torres, A.M., Grieve, S.M., Chapman, B.E. and Kuchel, P.W.
Strong and weak binding of water to proteins studied by NMR
Packard, B.Z., Toptygin, D.D., Komoriya, A. and Brand, L. triple-quantum filtered relaxation spectroscopy of '7Q-water
Characterization of fluorescence quenching in bifluorophoric (67) 187
protease substrates (67) 167 Toyoshima, Y.Y., see Imafuku, Y. (67) 117
Parisoli, A., see Favilla, R. (67) 75
Petkanchin, I., see Dobrikova, A. (67) 239
Vera, J.H., see Soto-Campos, A.M. (67) 97
Qian, H.
A simple theory of motor protein kinetics and energetics (67) Wang, C., see Lee, I. (67) 159
263 Wardman, P., see Candeias, L.P. (67) 229
Qian, H., see Shapiro, B.E. (67) 211
Wiechmann, A., see Engelke, M. (67) 127
Raukas, E., Kooli, K., Yamkovoi, V.I. and Schiitz, H.
Free energy of the binding of uridylic acid oligomers with Yamaguchi, T., see Ohmori, T. (67) 51
double stranded poly(A) - poly(U) (67) 245 Yamkovoi, V.I., see Raukas, E. (67) 245
Riske, K.A., see Biaggi, M.H. (67) 139 Yang, L., see Lee, I. (67) 159
Risuleo, G., see Bonincontro, A. (67) 43 Yang, R.Y.K., see Ohmori, T. (67) 51
Ruoff, P. and Lillo, C.
Evidence for increased proton dissociation in low-activity
forms of dephosphorylated squash-leaf nitrate reductase (67) Zheng, R., see Li, W. (67) 281
59 Zou, Z., see Li, W. (67) 281
Biophysical
Chemistry
LSEVIER
Biophysical Chemistry 67 (1997) 295-300
Subject Index to Volume 67
Activity coefficient Carboxyfluorescein permeability
Amino acid; Electrolyte; lon (Soto-Campos, A.M. (67) 97) Inhalation anaesthetics; Phase transition; Bilayer order; Differen-
tial scanning calorimetry; Fluorescence anisotropy (Engelke, M.
Adiabatic compressibility (67) 127)
Ultrasonic velocimetry; Ultrasound absorption; Density; Lipopro-
teins (Hianik, T. (67) 221) Cation interaction
G-DNA; Quadruplex structure; Guanine quartet; Force field calcu-
Amino acid lations (Tohl, J. (67) 177)
Electrolyte; Activity coefficient; lon (Soto-Campos, A.M. (67) 97)
Cell motility
Arabidopsis thaliana
Sliding movement; Dynein; Microtubule; Protein motor (Imafuku,
Thylakoids membranes; Mutants; Electric light scattering; Electric
Y. (67) 117)
dipole moments (Dobrikova, A. (67) 239)
ATPase Chemomechanical transduction
Nonionic detergent; Muscle contraction; In vitro motility; ATPase
Nonionic detergent; Muscle contraction; In vitro motility; Chemo-
(Kellermayer, M.S.Z. (67) 199)
mechanical transduction (Kellermayer, M.S.Z. (67) 199)
Bilayer order Chemometrics
Inhalation anaesthetics; Phase transition; Carboxyfluorescein per- Global fitting; Singular value decomposition, SVD; Kinetic data
meability; Differential scanning calorimetry; Fluorescence analysis; Intrinsic kinetics; Halorhodopsin (Dioumaev, A.K. (67)
anisotropy (Engelke, M. (67) 127) 1)
Binding Chromosomes
Pepsin; 4’ ,6-diamidino-2-phenylindole (DAPI); Fluorescent probe; Fluorescence spectroscopy; Fluorescence microscopy; Imaging;
Circular dichroism (Mazzini, A. (67) 65) Time-resolved fluorescence; Two-photon excitation; Three-photon
excitation; DNA; Ethidium bromide; Multi-photon microscopy
Binding parameters (Malak, H. (67) 35)
Oligouridylic acid; Interaction with poly(A) - poly(U); Thermody-
namic parameters; Free energy; UV spectrophotometry (Raukas, Circular dichroism
E. (67) 245) Melanotropin; Peptide—lipid interaction; Spin label (Biaggi, M.H.
(67) 139)
Biological network
Fibrin; Polymer gel; Dynamic light scattering (Arcovito, G. (67)
Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPI); Denaturation; Un-
287)
folding; Refolding; Kinetics; Fluorescence (Favilla, R. (67) 75)
Bond rupture
Dissociation kinetics; Kramers’ rate theory; Molecular mechanics; Pepsin; 4’ ,6-diamidino-2-phenylindole (DAPI); Binding; Fluores-
Nano-biochemisry; Thermal fluctuation (Shapiro, B.E. (67) 211) cent probe (Mazzini, A. (67) 65)
Bound water ? Compartmentalized enzyme reactor
Hydration; NMR; '’Q-water; Protein—water interaction; Triple- Self-sustained oscillations; pH oscillations; Proteolytic enzyme;
quantum filtered spectra (Torres, A.M. (67) 187) Enzyme kinetics (Ohmori, T. (67) 51)
296 Subject Index to Volume 67
Concentration effects on self-stacking DNA bending
Self-association constants; Isoalloxazine residue; Isodesmic model DNA electrostatics; Poisson—Boltzmann equation; DNA-protein
for indefinite non-cooperative self-association; Self-stacking (Bas- interactions; Nucleosome structure (Sivolob, A. (67) 85)
tian, M. (67) 27)
DNA electrostatics
Conformational transitions Poisson—Boltzmann equation; DNA bending; DNA-protein inter-
Hairpin triplex DNA; UV spectroscopy; Electrostatic effects (Lee, actions; Nucleosome structure (Sivolob, A. (67) 85)
I. (67) 159)
DNA-protein interactions
DNA electrostatics; Poisson—Boltzmann equation; DNA bending;
Cucurbita maxima (squash)
Nucleosome structure (Sivolob, A. (67) 85)
Nitrate reductase; pH; Kinetics (Ruoff, P. (67) 59)
Dynamic light scattering
Curvature
Fibrin; Polymer gel; Biological network (Arcovito, G. (67) 287)
Phosphatidylethanolamine; Gramicidin; Hydrogen bonds; Fluores-
cence; High pressure (Scarlata, S. (67) 269)
Dynein
Sliding movement; Microtubule; Cell motility; Protein motor (Im-
4’ ,6-diamidino-2-phenylindole (DAPD afuku, Y. (67) 117)
Pepsin; Binding; Fluorescent probe; Circular dichroism (Mazzini,
A. (67) 65) E. coli
Dielectric properties; Ribosomal proteins; Ribosomal RNA
Denaturation (Bonincontro, A. (67) 43)
Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPI); Unfolding; Refold-
ing; Kinetics; Fluorescence; Circular dichroism (Favilla, R. (67) Electric dipole moments
75) Thylakoids membranes; Arabidopsis thaliana; Mutants; Electric
light scattering (Dobrikova, A. (67) 239)
Density
Ultrasonic velocimetry; Ultrasound absorption; Lipoproteins; Adi- Electric light scattering
abatic compressibility (Hianik, T. (67) 221) Thylakoids membranes; Arabidopsis thaliana; Mutants; Electric
dipole moments (Dobrikova, A. (67) 239)
Dielectric properties
E. coli; Ribosomal proteins; Ribosomal RNA (Bonincontro, A. Electrolyte
(67) 43) Amino acid; Activity coefficient; lon (Soto-Campos, A.M. (67)
97)
Differential scanning calorimetry
Electron transfer
Inhalation anaesthetics; Phase transition; Bilayer order; Car-
DNA base repair; Phenylpropanoid glycosides; Thymine radical
boxyfluorescein permeability; Fluorescence anisotropy (Engelke,
M. (67) 127) anion; Pulse radiolysis (Li, W. (67) 281)
Myoglobin; Protein-surfactant films; Salt effects; Protein unfold-
Dissociation kinetics
ing (Nassar, A.-E.F. (67) 107)
Bond rupture; Kramers’ rate theory; Molecular mechanics; Nano-
biochemisry; Thermal fluctuation (Shapiro, B.E. (67) 211)
Electrostatic effects
Conformational transitions; Hairpin triplex DNA; UV spec-
DNA troscopy (Lee, I. (67) 159)
Fluorescence spectroscopy; Fluorescence microscopy; Imaging;
Time-resolved fluorescence; Two-photon excitation; Three-photon
Energy transduction
excitation; Ethidium bromide; Chromosomes; Multi-photon mi-
Markov process; Mechanical force; Mechanochemical coupling;
croscopy (Malak, H. (67) 35) Nano-biochemistry; Stochastic model (Qian, H. (67) 263)
G-DNA Enzyme kinetics
Quadruplex structure; Guanine quartet; Cation interaction; Force Self-sustained oscillations; pH oscillations; Compartmentalized
field calculations (TOhl, J. (67) 177) enzyme reactor; Proteolytic enzyme (Ohmori, T. (67) 51)
DNA base repair EPR
Phenylpropanoid glycosides; Thymine radical anion; Electron Tryptophan; Indole-3-acetic acid; Superoxide; Peroxidase; Radiol-
transfer; Pulse radiolysis (Li, W. (67) 281) ysis; Spin-trapping (Candeias, L.P. (67) 229)
Subject Index to Volume 67
Ethidium bromide Free energy
Fluorescence spectroscopy; Fluorescence microscopy; Imaging; Oligouridylic acid; Interaction with poly(A) - poly(U); Thermody-
Time-resolved fluorescence; Two-photon excitation; Three-photon namic parameters; Binding parameters; UV spectrophotometry
excitation; DNA; Chromosomes; Multi-photon microscopy (Raukas, E. (67) 245)
(Malak, H. (67) 35)
Global fitting
Exciton bands Singular value decomposition, SVD; Kinetic data analysis;
Fluorescence; Forster-type resonance energy transfer; Ground-state Chemometrics; Intrinsic kinetics; Halorhodopsin (Dioumaev, A.K.
complexes; Xanthenes; Protease substrates (Packard, B.Z. (67) (67) 1)
167)
Gramicidin
Fibrin Phosphatidylethanolamine; Curvature; Hydrogen bonds; Fluores-
Polymer gel; Dynamic light scattering; Biological network cence; High pressure (Scarlata, S. (67) 269)
(Arcovito, G. (67) 287)
Ground-state complexes
Fluorescence Fluorescence; Exciton bands; Forster-type resonance energy trans-
Exciton bands; Forster-type resonance energy transfer; Ground- fer; Xanthenes; Protease substrates (Packard, B.Z. (67) 167)
state complexes; Xanthenes; Protease substrates (Packard, B.Z.
(67) 167) Guanine quartet
G-DNA; Quadruplex structure; Cation interaction; Force field
calculations (Tohl, J. (67) 177)
Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPI); Denaturation; Un-
folding; Refolding; Kinetics; Circular dichroism (Favilla, R. (67)
75) pH
Nitrate reductase; Kinetics; Cucurbita maxima (squash) (Ruoff, P
(67) 59)
Phosphatidylethanolamine; Gramicidin; Curvature; Hydrogen
bonds; High pressure (Scarlata, S. (67) 269)
Hairpin triplex DNA
Conformational transitions; UV spectroscopy; Electrostatic effects
Fluorescence anisotropy
(Lee, I. (67) 159)
Inhalation anaesthetics; Phase transition; Bilayer order; Car-
boxyfluorescein permeability; Differential scanning calorimetry
Halorhodopsin
(Engelke, M. (67) 127)
Global fitting; Singular value decomposition, SVD; Kinetic data
analysis; Chemometrics; Intrinsic kinetics (Dioumaev, A.K. (67)
Fluorescence microscopy 1)
Fluorescence spectroscopy; Imaging; Time-resolved fluorescence;
Two-photon excitation; Three-photon excitation; DNA; Ethidium
High picssure
bromide; Chromosomes; Multi-photon microscopy (Malak, H.
Phosphatidylethanolamine; Gramicidin; Curvature; Hydrogen
(67) 35)
bonds; Fluorescence (Scarlata, S. (67) 269)
Fluorescence spectroscopy PH oscillations
Fluorescence microscopy; Imaging; Time-resolved fluorescence; Self-sustained oscillations; Compartmentalized enzyme reactor;
Two-photon excitation; Three-photon excitation; DNA; Ethidium Proteolytic enzyme; Enzyme kinetics (Ohmori, T. (67) 51)
bromide; Chromosomes; Multi-photon microscopy (Malak, H.
(67) 35)
Hydration f
Bound water; NMR; ''O-water; Protein—water interaction:
Fluorescent probe Triple-quantum filtered spectra (Torres, A.M. (67) 187)
Pepsin; 4’,6-diamidino-2-phenylindole (DAPI); Binding; Circular
dichroism (Mazzini, A. (67) 65) Hydrogen bonds
Phosphatidylethanolamine; Gramicidin; Curvature; Fluorescence:
Force field calculations High pressure (Scarlata, S. (67) 269)
G-DNA; Quadruplex structure; Guanine quartet; Cation interac-
tion (Tohl, J. (67) 177) Imaging
Fluorescence spectroscopy; Fluorescence microscopy; Time-re-
Férster-type resonance energy transfer solved fluorescence; Two-photon excitation; Three-photon excita-
Fluorescence; Exciton bands; Ground-state complexes; Xanthenes; tion; DNA; Ethidium bromide; Chromosomes; Multi-photon mi-
Protease substrates (Packard, B.Z. (67) 167) croscopy (Malak, H. (67) 35)
298 Subject Index to Volume 67
Indole-3-acetic acid Markov process
Tryptophan; Superoxide; Peroxidase; Radiolysis; EPR; Spin-trap- Energy transduction; Mechanical force; Mechanochemical cou-
ping (Candeias, L.P. (67) 229) pling; Nano-biochemistry; Stochastic model (Qian, H. (67) 263)
Inhalation anaesthetics Mechanical force
Phase transition; Bilayer order; Carboxyfluorescein permeability; Energy transduction; Markov process; Mechanochemical cou-
Differential scanning calorimetry; Fluorescence anisotropy (En- pling; Nano-biochemistry; Stochastic model (Qian, H. (67) 263)
gelke, M. (67) 127)
Mechanochemical coupling
Interaction with poly(A) - poly(U) Energy transduction; Markov process; Mechanical force; Nano-
Oligouridylic acid; Thermodynamic parameters; Free energy; biochemistry; Stochastic model (Qian, H. (67) 263)
Binding parameters; UV spectrophotometry (Raukas, E. (67) 245)
Melanotropin
Intrinsic kinetics Peptide—lipid interaction; Spin label; Circular dichroism (Biag £1,
Global fitting; Singular value decomposition, SVD; Kinetic data M.H. (67) 139)
analysis; Chemometrics; Halorhodopsin (Dioumaev, A.K. (67) 1)
Microtubule
In vitro motility
Sliding movement; Dynein; Cell motility; Protein motor (Imafuku,
Nonionic detergent; Muscle contraction; ATPase; Chemomechani- Y. (67) 117)
cal transduction (Kellermayer, M.S.Z. (67) 199)
Molecular mechanics
Ion
Bond rupture; Dissociation kinetics; Kramers’ rate theory; Nano-
Amino acid; Electrolyte; Activity coefficient (Soto-Campos, A.M.
biochemisry; Thermal fluctuation (Shapiro, B.E. (67) 211)
(67) 97)
Multi-photon microscopy
Iscalloxazine residue
Fluorescence spectroscopy; Fluorescence microscopy; Imaging;
Self-association constants; Concentration effects on self-stacking;
Time-resolved fluorescence; Two-photon excitation; Three-photon
Isodesmic model for indefinite non-cooperative self-association;
excitation; DNA; Ethidium bromide; Chromosomes (Malak, H.
Self-stacking (Bastian, M. (67) 27)
(67) 35)
Isodesmic model for indefinite non-cooperative self-association
Muscle contraction
Self-association constants; Concentration effects on self-stacking;
Nonionic detergent; In vitro motility; ATPase; Chemomechanical
Isoalloxazine residue; Self-stacking (Bastian, M. (67) 27)
transduction (Kellermayer, M.S.Z. (67) 199)
Kinetic data analysis
Mutants
Global fitting; Singular value decomposition, SVD; Chemomet-
rics; Intrinsic kinetics; Halorhodopsin (Dioumaev, A.K. (67) 1) Thylakoids membranes; Arabidopsis thaliana; Electric light scat-
tering; Electric dipole moments (Dobrikova, A. (67) 239)
Kinetics
Nitrate reductase; pH; Cucurbita maxima (squash) (Ruoff, P. (67) Myoglobin
59) Electron transfer; Protein-surfactant films; Salt effects; Protein
unfolding (Nassar, A.-E.F. (67) 107)
Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPI); Denaturation; Un-
folding; Refolding; Fluorescence; Circular dichroism (Favilla, R. Nano-biochemisry
(67) 75) Bond rupture; Dissociation kinetics; Kramers’ rate theory; Molec-
ular mechanics; Thermal fluctuation (Shapiro, B.E. (67) 211)
Kramers’ rate theory
Bond rupture; Dissociation kinetics; Molecular mechanics; Nano- Nano-biochemistry
biochemisry; Thermal fluctuation (Shapiro, B.E. (67) 211) Energy transduction; Markov process; Mechanical force;
Mechanochemical coupling; Stochastic model (Qian, H. (67) 263)
Lipoproteins
Ultrasonic velocimetry; Ultrasound absorption; Density; Adiabatic Nitrate reductase
compressibility (Hianik, T. (67) 221) pH; Kinetics; Cucurbita maxima (squash) (Ruoff, P. (67) 59)
LRE multimers NMR
Nucleosome positioning; rbcS Light-responsive elements; Theo- Bound water; Hydration; ''Q-water; Protein—water interaction;
retical methods for nucleosome positioning (Alessi, R. (67) 151) Triple-quantum filtered spectra (Torres, A.M. (67) 187)
Subject Index to Volume 67
Nonionic detergent Protease substrates
Muscle contraction; In vitro motility; ATPase; Chemomechanical Fluorescence; Exciton bands; Forster-type resonance energy trans-
transduction (Kellermayer, M.S.Z. (67) 199) fer; Ground-state complexes; Xanthenes (Packard, B.Z. (67) 167)
Nucleosome positioning Protein motor
rbcS Light-responsive elements; LRE multimers; Theoretical Sliding movement; Dynein; Microtubule; Cell motility (Imafuku,
methods for nucleosome positioning (Alessi, R. (67) 151) Y. (67) 117)
Nucleosome structure Protein-surfactant films
DNA electrostatics; Poisson—Boltzmann equation; DNA bending; Myoglobin; Electron transfer; Salt effects; Protein unfolding (Nas-
DNA-protein interactions (Sivolob, A. (67) 85) sar, A.-E.F. (67) 107)
Oligouridylic acid Protein unfolding
Interaction with poly(A)- poly(U); Thermodynamic parameters; Myoglobin; Electron transfer; Protein-surfactant films; Salt effects
Free energy; Binding parameters: UV spectrophotometry (Raukas, (Nassar, A.-E.F. (67) 107)
E. (67) 245)
Protein—water interaction -
'"O.water Bound water; Hydration; NMR; '7Q-water; Triple-quantum fil-
Bound water; Hydration; NMR; Protein—water interaction; tered spectra (Torres, A.M. (67) 187)
Triple-quantum filtered spectra (Torres, A.M. (67) 187)
Proteolytic enzyme
Pepsin Self-sustained oscillations; pH oscillations; Compartmentalized
4’ .6-diamidino-2-phenylindole (DAPI); Binding; Fluorescent enzyme reactor; Enzyme kinetics (Ohmori, T. (67) 51)
probe; Circular dichroism (Mazzini, A. (67) 65)
Pulse radiolysis
Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPD DNA base repair; Phenylpropanoid glycosides; Thymine radical
Denaturation; Unfolding; Refolding; Kinetics; Fluorescence; Cir- anion; Electron transfer (Li, W. (67) 281)
cular dichroism (Favilla, R. (67) 75)
Quadruplex structure
Peptide-lipid interaction G-DNA; Guanine quartet; Cation interaction; Force field calcula-
Melanotropin; Spin label; Circular dichroism (Biaggi, M.H. (67) tions (Tohl, J. (67) 177)
139)
Radiolysis
Peroxidase Tryptophan; Indole-3-acetic acid; Superoxide; Peroxidase; EPR:
Tryptophan; Indole-3-acetic acid; Superoxide; Radiolysis; EPR; Spin-trapping (Candeias, L.P. (67) 229)
Spin-trapping (Candeias, L.P. (67) 229)
Refolding
Phase transition Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPI); Denaturation; Un-
Inhalation anaesthetics; Bilayer order; Carboxyfluorescein perme- folding; Kinetics; Fluorescence; Circular dichroism (Favilla, R.
ability; Differential scanning calorimetry; Fluorescence anisotropy (67) 75)
(Engelke, M. (67) 127)
Ribosomal proteins
Phenylpropanoid glycosides Dielectric properties; E. coli; Ribosomal RNA (Bonincontro, A.
DNA base repair; Thymine radical anion; Electron transfer; Pulse (67) 43)
radiolysis (Li, W. (67) 281)
Ribosomal RNA
Phosphatidylethanolamine Dielectric properties; E. coli; Ribosomal proteins (Bonincontro,
Gramicidin; Curvature; Hydrogen bonds; Fluorescence; High pres- A. (67) 43)
sure (Scarlata, S. (67) 269)
Salt effects
Poisson—Boltzmann equation Myoglobin; Electron transfer; Protein-surfactant films; Protein
DNA electrostatics; DNA bending; DNA-protein interactions; Nu- unfolding (Nassar, A.-E.F. (67) 107)
cleosome structure (Sivolob, A. (67) 85)
Self-association constants
Polymer gel Concentration effects on self-stacking; Isoalloxazine residue;
Fibrin; Dynamic light scattering; Biological network (Arcovito, G. Isodesmic model for indefinite non-cooperative self-association;
(67) 287) Self-stacking (Bastian, M. (67) 27)
300 Subject Index to Volume 67
Self-stacking Thylakoids membranes
Self-association constants; Concentration effects on self-stacking; Arabidopsis thaliana; Mutants; Electric light scattering; Electric
Isoalloxazine residue; Isodesmic model for indefinite non-cooper- dipole moments (Dobrikova, A. (67) 239)
ative self-association (Bastian, M. (67) 27)
Thymine radical anion
Self-sustained oscillations DNA base repair; Phenylpropanoid glycosides; Electron transfer;
pH oscillations; Compartmentalized enzyme reactor; Proteolytic Pulse radiolysis (Li, W. (67) 281)
enzyme; Enzyme kinetics (Ohmori, T. (67) 51)
Time-resolved fluorescence
Singular value decomposition, SVD
Fluorescence spectroscopy: Fluorescence microscopy: Imaging;
Global fitting; Kinetic data analysis; Chemometrics; Intrinsic ki- Two-photon excitation; Three-photon excitation; DNA; Ethidium
netics; Halorhodopsin (Dioumaev, A.K. (67) 1) bromide; Chromosomes; Multi-photon microscopy (Malak, H.
(67) 35)
Sliding movement
Dynein; Microtubule; Cell motility; Protein motor (Imafuku, Y.
Triple-quantum filtered spectra.
(67) 117)
Bound water; Hydration; NMR; '’Q-water; Protein—water interac-
tion (Torres, A.M. (67) 187)
rbcS Light-responsive elements
Nucleosome positioning; LRE multimers; Theoretical methods for
nucleosome positioning (Alessi, R. (67) 151) Tryptophan
Indole-3-acetic acid; Superoxide; Peroxidase; Radiolysis; EPR;
Spin label Spin-trapping (Candeias, L.P. (67) 229)
Melanotropin; Peptide—lipid interaction; Circular dichroism (Bi-
ag gi, M.H. (67) 139) Two-photon excitation
Fluorescence spectroscopy; Fluorescence microscopy; Imaging;
Spin-trapping Time-resolved fluorescence; Three-photon excitation; DNA;
Tryptophan; Indole-3-acetic acid; Superoxide; Peroxidase; Radiol- Ethidium bromide; Chromosomes; Multi-photon microscopy
ysis; EPR (Candeias, L.P. (67) 229) (Malak, H. (67) 35)
Stochastic model Ultrasonic velocimetry
Energy transduction; Markov process; Mechanical force; Ultrasound absorption; Density; Lipoproteins; Adiabatic com-
Mechanochemical coupling; Nano-biochemistry (Qian, H. (67) pressibility (Hianik, T. (67) 221)
263)
Ultrasound absorption
Superoxide Ultrasonic velocimetry; Density; Lipoproteins; Adiabatic com-
Tryptophan; Indole-3-acetic acid; Peroxidase; Radiolysis; EPR; pressibility (Hianik, T. (67) 221)
Spin-trapping (Candeias, L.P. (67) 229)
Unfolding
Theoretical methods for nucleosome positioning
Pepsin, 4’ ,6-diamidino-2-phenylindole (DAPI); Denaturation; Re-
Nucleosome positioning: rbcS Light-responsive elements; LRE
folding; Kinetics; Fluorescence; Circular dichroism (Favilla, R.
multimers (Alessi, R. (67) 151)
(67) 75)
Thermal fluctuation
Bond rupture; Dissociation kinetics; Kramers’ rate theory; Molec- UV spectrophotometry
ular mechanics; Nano-biochemisry (Shapiro, B.E. (67) 211) Oligouridylic acid; Interaction with poly(A) - poly(U); Thermody-
namic parameters; Free energy; Binding parameters (Raukas, E.
(67) 245)
Thermodynamic parameters
Oligouridylic acid; Interaction with poly-( poAly()U) ; Free en-
ergy; Binding parameters; UV spectrophotometry (Raukas, E. (67) UV spectroscopy
245) Conformational transitions; Hairpin triplex DNA; Electrostatic
effects (Lee, I. (67) 159)
Three-photon excitation
Fluorescence spectroscopy; Fluorescence microscopy; Imaging; Xanthenes
Time-resolved fluorescence; Two-photon excitation; DNA; Ethid- Fluorescence; Exciton bands; Forster-type resonance energy trans-
ium bromide; Chromosomes; Multi-photon microscopy (Malak, fer; Ground-state complexes; Protease substrates (Packard, B.Z.
H. (67) 35) (67) 167)