Biophysical Chemistry 1997: Vol 64 Index

7 Pages·1997·1.8 MB·English

a we ~?
- EAN ee od
~ 45%Y~, w.a y © + > +3 Biophysical
deaey a 5
wT wt Chemistry
y ’
EL= SEviV Ia ER
Biophysical Chemistry 64 (1997) 289-290
Author Index to Volume 64
Ackers, G.K. and Bolen, D.W. Fang, J., see Ferrari, M.E. (64) 235
The Gibbs conference on biothermodynamics: Origins and Ferrari, M.E., Fang, J. and Lohman, T.M.
evolution (64) 3 A mutation in E. coli SSB protein (W54S) alters intra-tetra-
Ackers, G.K., see Doyle, M.L. (64) 271 mer negative cooperativity and inter-tetramer positive coopera-
Ackers, G.K., see Huang, Y. (64) 157 tivity for single-stranded DNA binding (64) 235
Allewell, N.M., see LiCata, V.J. (64) 225 Freire, E., see Hilser, V.J. (64) 69
Garcia-Moreno E., B., Dwyer, J.J., Gittis, A.G., Lattman, E.E.,
Barany, G., see Barbar, E. (64) 45
Spencer, D.S. and Stites, W.E.
Barbar, E., LiCata, V.J., Barany, G. and Woodward, C. Experimental measurement of the effective dielectric in the
Local fluctuations and global unfolding of partially folded hydrophobic core of a protein (64) 211
BPTI detected by NMR (64) 45 Gittis, A.G., see Garcia-Moreno E., B. (64) 211
Beretta, S., see Gryczynski, Z. (64) 81
Gryczynski, I., see Gryczynski, Z. (64) 81
Bloomfield, V.A., see Rouzina, I. (64) 139
Gryczynski, Z., Beretta, S., Lubkowski, J., Razynska, A.,
Bolen, D.W., see Ackers, G.K. (64) 3 Gryczynski, I. and Bucci, E.
Bucci, E., see Gryczynski, Z. (64) 81 Time-resolved fluorescence of hemoglobin species (64) 81
Bujalowski, W., see Jezewska, M.J. (64) 253 Guinto, E.R. and Di Cera, E.
Critical role of W60d in thrombin allosterism (64) 103
Cai, G.-Z., Callaci, T.P., Luther, M.A. and Ching Lee, J. Hall, K.B., see Lu, J. (64) 111
Regulation of rabbit muscle phosphofructokinase by phospho-
Hilser, V.J., Townsend, B.D. and Freire, E.
rylation (64) 199
Structure-based statistical thermodynamic analysis of T4
Callaci, T.P., see Cai, G.-Z. (64) 199
lysozyme mutants: structural mapping of cooperative interac-
Chaiken, I.M., see Myszka, D.G. (64) 127
tions (64) 69
Chaires, J.B. Holt, J.M., see Doyle, M.L. (64) 271
Possible origin of differences between van’t Hoff and calori-
Huang, Y., Koestner, M.L. and Ackers, G.K.
metric enthalpy estimates (64) 15
Tertiary and quaternary chloride effects of the partially ligated
Ching Lee, J., see Cai, G.-Z. (64) 199
(CN-met) hemoglobin intermediates (64) 157
Ionescu, R., see Eftink, M.R. (64) 175
DeKoster, G.T. and Robertson, A.D.
Calorimetrically-derived parameters for protein interactions Jezewska, M.J. and Bujalowski, W.
with urea and guanidine—HCl are not consistent with denatu- Quantitative analysis of ligand—macromolecule interactions
rant m values (64) 59 using differential dynamic quenching of the ligand fluores-
Di Cera, E., see Guinto, E.R. (64) 103 cence to monitor the binding (64) 253
Doyle, M.L., Holt, J.M. and Ackers, G.K.
Effects of NaCl on the linkages between O, binding and Koestner, M.L., see Huang, Y. (64) 157
subunit assembly in human hemoglobin: titration of the quater-
Lattman, E.E., see Garcia-Moreno E., B. (64) 211
nary enhancement effect (64) 271
LiCata, V.J. and Allewell, N.M.
Doyle, M.L., see Myszka, D.G. (64) 127
Is substrate inhibition a consequence of allostery in aspartate
Dwyer, J.J., see Garcia-Moreno E., B. (64) 211
transcarbamylase? (64) 225
LiCata, V.J., see Barbar, E. (64) 45
Eftink, M.R. and Ionescu, R. Liu, Y. and Sturtevant, J.M.
Thermodynamics of protein unfolding: questions pertinent to Significant discrepancies between van’t Hoff and calorimetric
testing the validity of the two-state model (64) 175 enthalpies. III (64) 121
290 Author Index to Volume 64
Lohman, T.M., see Ferrari, M.E. (64) 235 Rouzina, I. and Bloomfield, V.A.
Lopez, M.M., see Makhatadze, G.I. (64) 93 Competitive electrostatic binding of charged ligands to poly-
Lu, J. and Hall, K.B. electrolytes: practical approach using the non-linear Poisson—
Thermal unfolding of the N-terminal RNA binding domain of Boltzmann equation (64) 139
the human UIA protein studied by differential scanning
calorimetry (64) 111
Schellman, J.A.
Lubkowski, J., see Gryczynski, Z. (64) 81
Thermodynamics, molecules and the Gibbs conference (64) 7
Luther, M.A., see Cai, G.-Z. (64) 199
Spencer, D.S., see Garcia-Moreno E., B. (64) 211
Stites, W.E., see Garcia-Moreno E., B. (64) 211
Makhatadze, G.I., Lopez, M.M. and Privalov, P.L.
Sturtevant, J.M., see Liu, Y. (64) 121
Heat capacities of protein functional groups (64) 93
Morton, T.A., see Myszka, D.G. (64) 127
Timasheff, S.N., see Xie, G. (64) 25
Myszka, D.G., Morton, T.A., Doyle, M.L. and Chaiken, I.M.
Townsend, B.D., see Hilser, V.J. (64) 69
Kinetic analysis of a protein antigen—antibody interaction
limited by mass transport on an optical biosensor (64) 127
Woodward, C., see Barbar, E. (64) 45
Privalov, P.L., see Makhatadze, G.I. (64) 93
Xie, G. and Timasheff, S.N.
Razynska, A., see Gryczynski, Z. (64) 81 The thermodynamic mechanism of protein stabilization by
Robertson, A.D., see DeKoster, G.T. (64) 59 trehalose (64) 25
}
|
Biophysical
Chemistry
Biophysical Chemistry 64 (1997) 291-294
Subject Index to Volume 64
Allosteric enzymes Chemical denaturation
Thrombin; Na*; Site-directed mutagenesis (Guinto, E.R. (64) Ribonuclease A; Protein folding; Denaturant binding; Denaturant
103) m values (DeKoster, G.T. (64) 59)
Allosteric regulation Chemical exchange
Cooperativity; Hemoglobin intermediate; Subunit assembly Protein folding; Segmental motions; NMR; Equilibrium thermody-
(Huang, Y. (64) 157) namics (Barbar, E. (64) 45)
Phosphorylation; Self-association; Protein—protein interaction; Competitive electrostatic binding
Phosphofructokinase (Cai, G.-Z. (64) 199) Charged ligands; Non-linear Poisson—Boltzmann equation; Poly-
electrolytes (Rouzina, I. (64) 139)
Avogadro’s hypothesis
Gibbs conferences; Molecular mechanisms; Site-directed mutage- Cooperative binding
nesis; Thermodynamics (Schellman, J.A. (64) 7) Hemoglobin; Quaternary enhancement; Regulation; Subunit as-
sembly (Doyle, M.L. (64) 271)
BlAcore
Surface plasmon resonance; Biosensor; Mass transport; Kinetics; Cooperative interactions
Protein—protein interaction (Myszka, D.G. (64) 127) Structural mapping; Structure-based statistical thermodynamic
analysis; T4 lysozyme mutants (Hilser, V.J. (64) 69)
Biosensor
Surface plasmon resonance; BlAcore; Mass transport; Kinetics; Cooperativity
Protein—protein interaction (Myszka, D.G. (64) 127) Allosteric regulation; Hemoglobin intermediate; Subunit assembly
(Huang, Y. (64) 157)
Biothermodynamics
Gibbs conference (Ackers, G.K. (64) 3) Modeling; Nonlinear analysis; Data simulation; Enzyme kinetics;
GroEL (LiCata, V.J. (64) 225)
Buried ionizable group
Dielectric inside a protein; Effective dielectric; Electrostatics; pK, Co-solvents
in hydrophobic environment; Hydration (Garcia-Moreno E., B. Trehalose; Preferential interactions; Transfer free energy; Transfer
(64) 211) enthalpy; Transfer entropy; Protein stabilization (Xie, G. (64) 25)
Calorimetric enthalpy Data simulation
Isothermal titration calorimetry; van’t Hoff enthalpy (Liu, Y. (64) Cooperativity; Modeling; Nonlinear analysis; Enzyme kinetics;
121) GroEL (LiCata, V.J. (64) 225)
Calorimetry Denaturant binding
Enthalpy; Monte Carlo simulation; Parameter estimation; van't Ribonuclease A; Protein folding; Chemical denaturation; Denatu-
Hoff plots (Chaires, J.B. (64) 15) rant m values (DeKoster, G.T. (64) 59)
Charged ligands Denaturant m values
Competitive electrostatic binding; Non-linear Poisson—Boltzmann Ribonuclease A; Protein folding; Chemical denaturation; Denatu-
equation; Polyelectrolytes (Rouzina, I. (64) 139) rant binding (DeKoster, G.T. (64) 59)
292 Subject Index to Volume 64
Dielectric inside a protein Helicases
Buried ionizable group; Effective dielectric; Electrostatics; pX, in Model-independent isotherms; Macromolecular binding; Fluores-
hydrophobic environment; Hydration (Garcia-Moreno E., B. (64) cence quenching (Jezewska, M.J. (64) 253)
211)
Hemoglobin
Differential scanning calorimetry Cooperative binding; Quaternary enhancement; Regulation; Sub-
Protein unfolding; RNA binding domain; Human UIA (Lu, J. (64) unit assembly (Doyle, M.L. (64) 271)
111)
Hemoglobin intermediate
Effective dielectric Allosteric regulation; Cooperativity; Subunit assembly (Huang, Y.
Buried ionizable group; Dielectric inside a protein; Electrostatics; (64) 157)
pX, in hydrophobic environment; Hydration (Garcia-Moreno E.,
B. (64) 211)
Hemoglobin species
Fluorescence lifetime; Time-resolved fluorescence (Gryczynski,
Electrostatics Z. (64) 81)
Buried ionizable group; Dielectric inside a protein; Effective
dielectric; pX, in hydrophobic environment; Hydration (Garcia-
van’t Hoff enthalpy
Moreno E., B. (64) 211)
Calorimetric enthalpy; Isothermal titration calorimetry (Liu, Y.
(64) 121)
Energetics
Fluorescence; Thermodynamics; Replication; Recombination; Re-
van’t Hoff plots
pair (Ferrari, M.E. (64) 235)
Enthalpy; Calorimetry; Monte Carlo simulation; Parameter estima-
tion (Chaires, J.B. (64) 15)
Enthalpy
Calorimetry; Monte Carlo simulation; Parameter estimation; van’t
Human U1A
Hoff plots (Chaires, J.B. (64) 15)
Protein unfolding; RNA binding domain; Differential scanning
calorimetry (Lu, J. (64) 111)
Enzyme kinetics
Cooperativity; Modeling; Nonlinear analysis; Data simulation;
Hydration
GroEL (LiCata, V.J. (64) 225)
Buried ionizable group; Dielectric inside a protein; Effective
dielectric; Electrostatics; pK, in hydrophobic environment
Equilibrium thermodynamics
(Garcia-Moreno E., B. (64) 211)
Protein folding; Segmental motions; Chemical exchange; NMR
(Barbar, E. (64) 45)
Isothermal titration calorimetry
Calorimetric enthalpy; van’t Hoff enthalpy (Liu, Y. (64) 121)
Fluorescence lifetime
Hemoglobin species; Time-resolved fluorescence (Gryczynski, Z.
Kinetics
(64) 81)
Surface plasmon resonance; BlAcore; Biosensor; Mass transport;
Protein—protein interaction (Myszka, D.G. (64) 127)
Fluorescence quenching
Model-independent isotherms; Macromolecular binding; Helicases
(Jezewska, M.J. (64) 253) pX, in hydrophobic environment
Buried ionizable group; Dielectric inside a protein; Effective
Fluorescence dielectric; Electrostatics; Hydration (Garcia-Moreno E., B. (64)
Thermodynamics; Energetics; Replication; Recombination; Repair 211)
(Ferrari, M.E. (64) 235)
Macromolecular binding
Gibbs conference Model-independent isotherms; Helicases; Fluorescence quenching
Biothermodynamics (Ackers, G.K. (64) 3) (Jezewska, M.J. (64) 253)
Gibbs conferences Mass transport
Avogadro’s hypothesis; Molecular mechanisms; Site-directed mu- Surface plasmon resonance; BlAcore; Biosensor; Kinetics; Pro-
tagenesis; Thermodynamics (Schellman, J.A. (64) 7) tein—protein interaction (Myszka, D.G. (64) 127)
GroEL Model compounds
Cooperativity; Modeling; Nonlinear analysis; Data simulation; Scanning calorimetry; Partial heat capacity; Unfolded proteins
Enzyme kinetics (LiCata, V.J. (64) 225) (Makhatadze, G.I. (64) 93)
Subject Index to Volume 64 293
Model-independent isotherms Protein folding
Macromolecular binding; Helicases; Fluorescence quenching Ribonuclease A; Chemical denaturation; Denaturant binding; De-
(Jezewska, M.J. (64) 253) naturant m values (DeKoster, G.T. (64) 59)
Modeling Segmental motions; Chemical exchange; NMR; Equilibrium ther-
Cooperativity; Nonlinear analysis; Data simulation; Enzyme kinet- modynamics (Barbar, E. (64) 45)
ics; GroEL (LiCata, V.J. (64) 225)
Protein stability
Molecular mechanisms Protein unfolding; Thermodynamics; Two-state model (Eftink,
Avogadro’s hypothesis; Gibbs conferences; Site-directed mutagen- M.R. (64) 175)
esis; Thermodynamics (Schellman, J.A. (64) 7)
Protein stabilization
Trehalose; Preferential interactions; Transfer free energy; Transfer
Monte Carlo simulation
enthalpy; Transfer entropy; Co-solvents (Xie, G. (64) 25)
Enthalpy; Calorimetry; Parameter estimation; van’t Hoff plots
(Chaires, J.B. (64) 15)
Protein unfolding
Protein stability; Thermodynamics; Two-state model (Eftink, M.R.
Na*
(64) 175)
Thrombin; Allosteric enzymes; Site-directed mutagenesis (Guinto,
E.R. (64) 103)
RNA binding domain; Human UIA; Differential scanning
calorimetry (Lu, J. (64) 111)
NMR
Protein folding; Segmental motions; Chemical exchange; Equilib-
rium thermodynamics (Barbar, E. (64) 45) Protein—protein interaction
Phosphorylation; Self-association; Allosteric regulation; Phospho-
fructokinase (Cai, G.-Z. (64) 199)
Nonlinear analysis
Cooperativity; Modeling; Data simulation; Enzyme kinetics;
Surface plasmon resonance; BlAcore; Biosensor; Mass transport;
GroEL (LiCata, V.J. (64) 225)
Kinetics (Myszka, D.G. (64) 127)
Non-linear Poisson—Boltzmann equation
Quaternary enhancement
Charged ligands; Competitive electrostatic binding; Polyelec-
Cooperative binding; Hemoglobin; Regulation; Subunit assembly
trolytes (Rouzina, I. (64) 139)
(Doyle, M.L. (64) 271)
Parameter estimation
Recombination
Enthalpy; Calorimetry; Monte Carlo simulation; van’t Hoff plots
Fluorescence; Thermodynamics; Energetics; Replication; Repair
(Chaires, J.B. (64) 15)
(Ferrari, M.E. (64) 235)
Partial heat capacity
Regulation
Scanning calorimetry; Model compounds; Unfolded proteins
Cooperative binding; Hemoglobin; Quaternary enhancement; Sub-
(Makhatadze, G.I. (64) 93)
unit assembly (Doyle, M.L. (64) 271)
Phosphofructokinase
Repair
Phosphorylation; Self-association; Allosteric regulation; Protein—
Fluorescence; Thermodynamics; Energetics; Replication; Recom-
protein interaction (Cai, G.-Z. (64) 199)
bination (Ferrari, M.E. (64) 235)
Phosphorylation Replication
Self-association; Allosteric regulation; Protein—protein interaction; Fluorescence; Thermodynamics; Energetics; Recombination; Re-
Phosphofructokinase (Cai, G.-Z. (64) 199) pair (Ferrari, M.E. (64) 235)
Polyelectrolytes Ribonuclease A
Charged ligands; Competitive electrostatic binding; Non-linear Protein folding; Chemical denaturation; Denaturant binding; De-
Poisson—Boltzmann equation (Rouzina, I. (64) 139) naturant m values (DeKoster, G.T. (64) 59)
Preferential interactions RNA binding domain
Trehalose; Transfer free energy; Transfer enthalpy; Transfer en- Protein unfolding; Human U1A; Differential scanning calorimetry
tropy; Protein stabilization; Co-solvents (Xie, G. (64) 25) (Lu, J. (64) 111)
294 Subject Index to Volume 64
Scanning calorimetry Thermodynamics
Partial heat capacity; Model compounds; Unfolded proteins Avogadro’s hypothesis; Gibbs conferences; Molecular mecha-
(Makhatadze, G.I. (64) 93) nisms; Site-directed mutagenesis (Schellman, J.A. (64) 7)
Fluorescence; Energetics; Replication; Recombination; Repair
Segmental motions
(Ferrari, M.E. (64) 235)
Protein folding; Chemical exchange; NMR; Equilibrium thermo-
dynamics (Barbar, E. (64) 45)
Protein stability; Protein unfolding; Two-state model (Eftink, M.R.
(64) 175)
Self-association
Phosphorylation; Allosteric regulation; Protein—protein interac- Thrombin
tion; Phosphofructokinase (Cai, G.-Z. (64) 199) Allosteric enzymes; Na”; Site-directed mutagenesis (Guinto, E.R.
(64) 103)
Site-directed mutagenesis
Avogadro’s hypothesis; Gibbs conferences; Molecular mecha- Time-resolved fluorescence
nisms; Thermodynamics (Schellman, J.A. (64) 7) Fluorescence lifetime; Hemoglobin species (Gryczynski, Z. (64)
81)
Thrombin; Allosteric enzymes; Na* (Guinto, E.R. (64) 103)
Transfer enthalpy
Trehalose; Preferential interactions; Transfer free energy; Transfer
Structural mapping
entropy; Protein stabilization; Co-solvents (Xie, G. (64) 25)
Cooperative interactions; Structure-based statistical thermody-
namic analysis; T4 lysozyme mutants (Hilser, V.J. (64) 69)
Transfer entropy
Trehalose; Preferential interactions; Transfer free energy; Transfer
Structure-based statistical thermodynamic analysis
enthalpy; Protein stabilization; Co-solvents (Xie, G. (64) 25)
Cooperative interactions; Structural mapping; T4 lysozyme mu-
tants (Hilser, V.J. (64) 69) Transfer free energy
Trehalose; Preferential interactions; Transfer enthalpy; Transfer
Subunit assembly entropy; Protein stabilization; Co-solvents (Xie, G. (64) 25)
Allosteric regulation; Cooperativity; Hemoglobin intermediate
(Huang, Y. (64) 157) Trehalose
Preferential interactions; Transfer free energy; Transfer enthalpy;
Transfer entropy; Protein stabilization; Co-solvents (Xie, G. (64)
Cooperative binding; Hemoglobin; Quaternary enhancement; Reg-
ulation (Doyle, M.L. (64) 271) 25)
Two-state model
Surface plasmon resonance
Protein stability; Protein unfolding; Thermodynamics (Eftink, M.R.
BlAcore; Biosensor; Mass transport; Kinetics; Protein—protein
(64) 175)
interaction (Myszka, D.G. (64) 127)
Unfolded proteins
T4 lysozyme mutants
Scanning calorimetry; Partial heat capacity; Model compounds
Cooperative interactions; Structural mapping; Structure-based sta- (Makhatadze, G.I. (64) 93)
tistical thermodynamic analysis (Hilser, V.J. (64) 69)
|