Biophysical Chemistry 1996: Vol 61 Index

7 Pages·1996·1.7 MB·English

Biophysical
Chemistry
Biophysical Chemistry 61 (1996) 185—186
Author Index to Volume 61
Aguda, B.D. Kanbe, T., see Yoshikawa, Y. (61) 93
Emergent properties of coupled enzyme reaction systems 1. Kong, Y., see Di Cera, E. (61) 107
Switching and clustering behaviour (61) |
Appignanesi, G., see Fernandez, A. (61) 51 Lencki, R.W., see Marangoni, A.G. (61) 177
Azuma, Y., see Iiyama, S. (61) 23 Leney, J., see Sun, L. (61) 143
Belinky, A., see Fernandez, A. (61) 101
MacColl, R. and Eisele, L.E.
Benazzi, L., see Perrella, M. (61) 169 R-phycoerythrins having two conformations for the same ag-
Benci, S., see Vaccari, S. (61) 9 gregate (61) 161
Marangoni, A.G., Duplessis, P.M., Lencki, R.W. and Yada, R.Y.
Denisov, I., see Perrella, M. (61) 169
Low-temperature stress induces transient oscillations in su-
Di Cera, E. and Kong, Y.
crose metabolism in Solanum tuberosum (61) 177
Theory of multivalent binding in one and two-dimensional
Matin Durrani, C., see Sun, L. (61) 143
lattices (61) 107
Mihashi, K., see Oda, T. (61) 63
Di Cera, E. and Phillipson, P.E.
Mozzarelli, A., see Vaccari, S. (61) 9
Map analysis of ligand binding to a linear lattice (61) 125
Doig, A.J.
Nagaishi, M., see liyama, S. (61) 23
Thermodynamics of amino acid side-chain internal rotations
Nygren, H.
(61) 131
Attractive adsorbate interaction in biological surface reactions
Donald, A.M., see Sun, L. (61) 143
(61) 73
Duplessis, P.M., see Marangoni, A.G. (61) 177
Oda, T., Shikata, Y. and Mihashi, K.
Eisele, L.E., see MacColl, R. (61) 161
Mutual sensitization of ATP and GTP in driving F-actin on the
Emoto, Y. and Tawada, K.
surface-fixed H-meromyosin (61) 63
Force production by chemically crosslinked myosin—actin
Oohira, K. and Toko, K.
crossbridges in rabbit skinned fibers in response to MgATP
Theory of electric characteristics of the lipid/PVC/DOPP
depletion (61) 85
membrane and PVC/DOPP membrane in response to taste
stimuli (61) 29
Fernandez, A. and Appignanesi, G.
Magnesium-aided folding of group I ribozymes with a mini-
Peracchi, A., see Vaccari, S. (61) 9
mal loss of entropy (61) 51
Fernandez, A. and Belinky, A. Perrella, M., Ripamonti, M., Benazzi, L. and Denisov, I.
Functional heterogeneity of the @ and B subunits in the
Sequentially folded SV-11 RNA: metastability is relevant to
association reaction between hemoglobin and carbon monox-
biological function (61) 101
Fillery-Travis, A.J., see Sun, L. (61) 143 ide (61) 169
Phillipson, P.E., see Di Cera, E. (61) 125
Hof, M., see Hutterer, R. (61) 151
Hutterer, R., Schneider, F.W., Sprinz, H. and Hof, M. Ripamonti, M., see Perrella, M. (61) 169
Binding and relaxation behaviour of prodan and patman in
phospholipid vesicles: a fluorescence and 'H NMR study (61) Schneider, F.W., see Hutterer, R. (61) 151
151 Sharp, K.A.
Electrostatic interactions in hirudin—thrombin binding (61) 37
liyama, S., Azuma, Y., Nagaishi, M. and Toko, K. Shikata, Y., see Oda, T. (61) 63
Change in electric characteristics of membranes in response to Sprinz, H., see Hutterer, R. (61) 151
taste stimuli with increasing amount of lipids in membrane Sun, L., Matin Durrani, C., Donald, A.M., Fillery-Travis, A.J. and
matrix of PVC and plasticizer (61) 23 Leney, J.
186 Author Index to Volume 6]
Diffusion of mixed micelles of bile salt-lecithin in amy- Vaccari, S., Benci, S., Peracchi, A. and Mozzarelli, A.
lopectin gels: A Fourier transform infrared microspectroscopy Time-resolved fluorescence of tryptophan synthase (61) 9
approach (61) 143
Yada, R.Y., see Marangoni, A.G. (61) 177
Tawada, K., see Emoto, Y. (61) 85 Yoshikawa, K., see Yoshikawa, Y. (61) 93
Toko, K., see liyama, S. (61) 23 Yoshikawa, Y., Yoshikawa, K. and Kanbe, T.
Toko, K., see Oohira, K. (61) 29 Daunomycin unfolds compactly packed DNA (61) 93
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Biophysical Chemistry 61 (1996) 187-190
Subject Index to Volume 61
Absolute entropy Chemical crosslinking
Internal rotation; Side chain; Protein stability; Protein folding; Muscle contraction; Force production; Crossbridges; Myosin;
Conformational entropy (Doig, A.J. (61) 131) Skinned fiber (Emoto, Y. (61) 85)
Acto-H-meromyosin Chemical sensor
Sliding velocity; In vitro motility assay; ATP hydrolysis; GTP Lipid membrane; Polyvinyl chloride; Plasticizer; Taste substances;
hydrolysis (Oda, T. (61) 63) Electrochemical property (Iiyama, S. (61) 23)
Adsorbate interaction
Lipid membrane; Polyvinyl chloride; Plasticizer; Electric poten-
Surface reaction; Ferritin adsorption; Virus adsorption; Bacteria tial; Hydrophobic interaction (Oohira, K. (61) 29)
adsorption; Attractive interaction (Nygren, H. (61) 73)
Clustering
Allostery
Coupled enzyme system; Substrate-inhibition kinetics; Bistability;
Hemoglobin ligation intermediates; Hemoglobin oxidation; Cryo- Propagation failure; Computer simulation (Aguda, B.D. (61) 1)
genic focusing (Perrella, M. (61) 169)
Compacted DNA
Amylopectin gel
Daunomycin; Spermidine; Higher order structure of DNA; Fluo-
Diffusion; Unstirred layer; Intestinal absorption; FTIR; Bile salt-
rescence microscopy; Electron microscopy (Yoshikawa, Y. (61)
lecithin mixed micelle (Sun, L. (61) 143)
93)
ATP hydrolysis
Computer simulation
Acto-H-meromyosin; Sliding velocity; In vitro motility assay;
Coupled enzyme system; Substrate-inhibition kinetics; Bistability;
GTP hydrolysis (Oda, T. (61) 63)
Clustering; Propagation failure (Aguda, B.D. (61) 1)
Attractive interaction
Computer simulations
Surface reaction; Adsorbate interaction; Ferritin adsorption; Virus
RNA sequential folding; Recombinant RNA; Qf replicase
adsorption; Bacteria adsorption (Nygren, H. (61) 73)
(Fernandez, A. (61) 101)
Bacteria adsorption
Conformational entropy
Surface reaction; Adsorbate interaction; Ferritin adsorption; Virus
Internal rotation; Side chain; Protein stability; Absolute entropy;
adsorption; Attractive interaction (Nygren, H. (61) 73)
Protein folding (Doig, A.J. (61) 131)
Bile salt-lecithin mixed micelle
Conformational heterogeneity in a biliprotein
Diffusion; Unstirred layer; Intestinal absorption; FTIR; Amy-
lopectin gel (Sun, L. (61) 143) Conformation of biliproteins; Phycoerythrin; Light harvesting in
photosynthesis; Protein circular dichroism (CD) (MacColl, R. (61)
161)
Binding
Hirudin; Thrombin; Electrostatics; Finite Difference; Poisson—
Boltzmann (Sharp, K.A. (61) 37) Conformation of biliproteins
Phycoerythrin; Light harvesting in photosynthesis; Conforma-
Cooperativity; Ising problem; Protein-DNA interactions; Scatchard tional heterogeneity in a biliprotein; Protein circular dichroism
plot (Di Cera, E. (61) 107) (CD) (MacColl, R. (61) 161)
Bistability Cooperativity
Coupled enzyme system; Substrate-inhibition kinetics; Clustering; Binding; Ising problem; Protein-DNA interactions; Scatchard plot
Propagation failure; Computer simulation (Aguda, B.D. (61) 1) (Di Cera, E. (61) 107)
188 Subject Index to Volume 61
Ising problem; Maps; Thermodynamics (Di Cera, E. (61) 125) Frequency domain fluorescence
Protein conformational states; Pyridoxal 5’-phosphate-dependent
Coupled enzyme system enzyme; Pyridoxal 5’-phosphate and tryptophan fluorescence de-
Substrate-inhibition kinetics; Bistability; Clustering; Propagation cays (Vaccari, S. (61) 9)
failure; Computer simulation (Aguda, B.D. (61) 1)
FTIR
Crossbridges Diffusion; Unstirred layer; Intestinal absorption; Bile salt-lecithin
Muscle contraction; Force production; Myosin; Skinned fiber; mixed micelle; Amylopectin gel (Sun, L. (61) 143)
Chemical crosslinking (Emoto, Y. (61) 85)
GTP hydrolysis
Cryogenic focusing Acto-H-meromyosin; Sliding velocity; In vitro motility assay;
Allostery; Hemoglobin ligation intermediates; Hemoglobin oxida- ATP hydrolysis (Oda, T. (61) 63)
tion (Perrella, M. (61) 169)
Head group dynamics
Daunomycin Time-dependent Stokes shift; Dielectric solvent relaxation; High
Spermidine; Higher order structure of DNA; Compacted DNA; resolution 'H NMR; Prodan; Patman (Hutterer, R. (61) 151)
Fluorescence microscopy; Electron microscopy (Yoshikawa, Y.
(61) 93) Hemoglobin ligation intermediates
Allostery; Hemoglobin oxidation; Cryogenic focusing (Perrella,
Dielectric solvent relaxation M. (61) 169)
Time-dependent Stokes shift; Head group dynamics; High resolu-
tion 'H NMR; Prodan; Patman (Hutterer, R. (61) 151) Hemoglobin oxidation
Allostery; Hemoglobin ligation intermediates; Cryogenic focusing
Diffusion (Perrella, M. (61) 169)
Unstirred layer; Intestinal absorption; FTIR; Bile salt-lecithin
mixed micelle; Amylopectin gel (Sun, L. (61) 143) Higher order structure of DNA
Daunomycin; Spermidine; Compacted DNA; Fluorescence mi-
Electric potential croscopy; Electron microscopy (Yoshikawa, Y. (61) 93)
Lipid membrane; Polyvinyl chloride; Plasticizer; Hydrophobic
interaction; Chemical sensor (Oohira, K. (61) 29) High resolution 'H NMR
Time-dependent Stokes shift; Dielectric solvent relaxation; Head
Electrochemical property group dynamics; Prodan; Patman (Hutterer, R. (61) 151)
Lipid membrane; Polyvinyl chloride; Plasticizer; Taste substances;
Chemical sensor (Iiyama, S. (61) 23) Hirudin
Thrombin; Electrostatics; Binding; Finite Difference; Poisson—
Electron microscopy Boltzmann (Sharp, K.A. (61) 37)
Daunomycin; Spermidine; Higher order structure of DNA; Com-
pacted DNA; Fluorescence microscopy (Yoshikawa, Y. (61) 93) Hydrophobic interaction
Lipid membrane; Polyvinyl chloride; Plasticizer; Electric poten-
Electrostatics tial; Chemical sensor (Oohira, K. (61) 29)
Hirudin; Thrombin; Binding; Finite Difference; Poisson—Boltz-
mann (Sharp, K.A. (61) 37) Internal rotation
Side chain; Protein stability; Absolute entropy; Protein folding;
Ferritin adsorption Conformational entropy (Doig, A.J. (61) 131)
Surface reaction; Adsorbate interaction; Virus adsorption; Bacteria
adsorption; Attractive interaction (Nygren, H. (61) 73) Intestinal absorption
Diffusion; Unstirred layer; FTIR; Bile salt-lecithin mixed micelle;
Finite Difference Amylopectin gel (Sun, L. (61) 143)
Hirudin; Thrombin; Electrostatics; Binding; Poisson—Boltzmann
(Sharp, K.A. (61) 37) In vitro motility assay
Acto-H-meromyosin; Sliding velocity; ATP hydrolysis; GTP hy-
Fluorescence microscopy drolysis (Oda, T. (61) 63)
Daunomycin; Spermidine; Higher order structure of DNA; Com-
pacted DNA; Electron microscopy (Yoshikawa, Y. (61) 93) Ising problem
Binding; Cooperativity; Protein-DNA interactions; Scatchard plot
Force production (Di Cera, E. (61) 107)
Muscle contraction; Crossbridges; Myosin; Skinned fiber; Chemi-
cal crosslinking (Emoto, Y. (61) 85) Cooperativity; Maps; Thermodynamics (Di Cera, E. (61) 125)
Subject Index to Volume 61
Light harvesting in photosynthesis Polyvinyl chloride
Conformation of biliproteins; Phycoerythrin; Conformational het- Lipid membrane; Plasticizer; Taste substances; Electrochemical
erogeneity in a biliprotein; Protein circular dichroism (CD) (Mac- property; Chemical sensor (Iiyama, S. (61) 23)
Coll, R. (61) 161)
Lipid membrane; Plasticizer; Electric potential; Hydrophobic in-
Lipid membrane teraction; Chemical sensor (Oohira, K. (61) 29)
Polyvinyl chloride; Plasticizer; Taste substances; Electrochemical
property; Chemical sensor (Iiyama, S. (61) 23) Prodan
Time-dependent Stokes shift; Dielectric solvent relaxation; Head
Polyvinyl chloride; Plasticizer; Electric potential; Hydrophobic group dynamics; High resolution 'H NMR; Patman (Hutterer, R.
interaction; Chemical sensor (Oohira, K. (61) 29) (61) 151)
Propagation failure
Loop closure
RNA folding; Ribozyme; Monte Carlo simulation; Pseudoknot Coupled enzyme system; Substrate-inhibition kinetics; Bistability;
(Fernandez, A. (61) 51) Clustering; Computer simulation (Aguda, B.D. (61) 1)
Protein conformational states
Low-temperature sweetening
Pyridoxal 5’-phosphate-dependent enzyme; Frequency domain flu-
Transient oscillations; Solanum tuberosum; Sucrose metabolism
(Marangoni, A.G. (61) 177) orescence; Pyridoxal 5’-phosphate and tryptophan fluorescence
decays (Vaccari, S. (61) 9)
Maps
Protein-DNA interactions
Cooperativity; Ising problem; Thermodynamics (Di Cera, E. (61)
Binding; Cooperativity; Ising problem; Scatchard plot (Di Cera,
125)
E. (61) 107)
Monte Carlo simulation
Protein folding
RNA folding; Ribozyme; Loop closure; Pseudoknot (Fernandez,
Internal rotation; Side chain; Protein stability; Absolute entropy;
A. (61) 51)
Conformational entropy (Doig, A.J. (61) 131)
Muscle contraction
Protein stability
Force production; Crossbridges; Myosin; Skinned fiber; Chemical
Internal rotation; Side chain; Absolute entropy; Protein folding;
crosslinking (Emoto, Y. (61) 85)
Conformational entropy (Doig, A.J. (61) 131)
Myosin
Pseudoknot
Muscle contraction; Force production; Crossbridges; Skinned fiber;
RNA folding; Ribozyme; Loop closure; Monte Carlo simulation
Chemical crosslinking (Emoto, Y. (61) 85)
(Fernandez, A. (61) 51)
Patman
Pyridoxal 5'-phosphate and tryptophan fluorescence decays
Time-dependent Stokes shift; Dielectric solvent relaxation; Head
Protein conformational states; Pyridoxal 5’-phosphate-dependent
group dynamics; High resolution 'H NMR; Prodan (Hutterer, R.
enzyme; Frequency domain fluorescence (Vaccari, S. (61) 9)
(61) 151)
Pyridoxal 5'-phosphate-dependent enzyme
Phycoerythrin Protein conformational states; Frequency domain fluorescence;
Conformation of biliproteins; Light harvesting in photosynthesis; Pyridoxal 5’-phosphate and tryptophan fluorescence decays
Conformational heterogeneity in a biliprotein; Protein circular (Vaccari, S. (61) 9)
dichroism (CD) (MacColl, R. (61) 161)
QB replicase
Plasticizer RNA sequential folding; Recombinant RNA; Computer simula-
Lipid membrane; Polyvinyl chloride; Taste substances; Electro- tions (Fernandez, A. (61) 101)
chemical property; Chemical sensor (Iiyama, S. (61) 23)
Recombinant RNA
Lipid membrane; Polyvinyl chloride; Electric potential; Hy- RNA sequential folding; QB replicase; Computer simulations
drophobic interaction; Chemical sensor (Oohira, K. (61) 29) (Fernandez, A. (61) 101)
Poisson—Boltzmann Ribozyme
Hirudin; Thrombin; Electrostatics; Binding; Finite Difference RNA folding; Loop closure; Monte Carlo simulation; Pseudoknot
(Sharp, K.A. (61) 37) (Fernandez, A. (61) 51)
190 Subject Index to Volume 61
RNA folding Sucrose metabolism
Ribozyme; Loop closure; Monte Carlo simulation; Pseudoknot Low-temperature sweetening; Transient oscillations; Solanum
(Fernandez, A. (61) 51) tuberosum (Marangoni, A.G. (61) 177)
RNA sequential folding Surface reaction
Recombinant RNA; Q£ replicase; Computer simulations Adsorbate interaction; Ferritin adsorption; Virus adsorption; Bac-
(Fernandez, A. (61) 101) teria adsorption; Attractive interaction (Nygren, H. (61) 73)
Scatchard plot Taste substances
Binding; Cooperativity; Ising problem; Protein-DNA interactions Lipid membrane; Polyvinyl chloride; Plasticizer; Electrochemical
(Di Cera, E. (61) 107) property; Chemical sensor (liyama, S. (61) 23)
Side chain
Thermodynamics
Internal rotation; Protein stability; Absolute entropy; Protein fold- Cooperativity; Ising problem; Maps (Di Cera, E. (61) 125)
ing; Conformational entropy (Doig, A.J. (61) 131)
Thrombin
Skinned fiber
Hirudin; Electrostatics; Binding; Finite Difference; Poisson—
Muscle contraction; Force production; Crossbridges; Myosin;
Boltzmann (Sharp, K.A. (61) 37)
Chemical crosslinking (Emoto, Y. (61) 85)
Time-dependent Stokes shift
Sliding velocity
Dielectric solvent relaxation; Head group dynamics; High resolu-
Acto-H-meromyosin; In vitro motility assay; ATP hydrolysis;
tion 'H NMR; Prodan; Patman (Hutterer, R. (61) 151)
GTP hydrolysis (Oda, T. (61) 63)
Transient oscillations
Solanum tuberosum
Low-temperature sweetening; Solanum tuberosum; Sucrose
Low-temperature sweetening; Transient oscillations; Sucrose
metabolism (Marangoni, A.G. (61) 177)
metabolism (Marangoni, A.G. (61) 177)
Spermidine Unstirred layer
Diffusion; Intestinal absorption; FTIR; Bile salt-lecithin mixed
Daunomycin; Higher order structure of DNA; Compacted DNA;
micelle; Amylopectin gel (Sun, L. (61) 143)
Fluorescence microscopy; Electron microscopy (Yoshikawa, Y.
(61) 93)
Virus adsorption
Substrate-inhibition kinetics Surface reaction; Adsorbate interaction; Ferritin adsorption; Bacte-
Coupled enzyme system; Bistability; Clustering; Propagation fail- ria adsorption; Attractive interaction (Nygren, H. (61) 73)
ure; Computer simulation (Aguda, B.D. (61) 1)