Table Of Content

Biophysical Chemistry Biophysical Chemistry 57 (1996) 297-298 Author Index to Volume 57 Abney, J.R. and Scalettar, B.A. Kulp, D.T. and Herzfeld, J. Fluctuations and membrane heterogeneity 27 Crowding-induced organization of cytoskeletal elements. III. Alexov, E., see Ohshima, H. 189 Spontaneous bundling and sorting of self-assembled filaments with different flexibilities 93 Bloomfield, V.A., see Dwyer, J.D. 55 Borowski, E., see Mazerski, J. 205 Lakowicz, J.R., see Gryczynski, I. 291 Busscher, H.J., see Van der Vegt, W. 253 Lapanje, S., see Poklar, N. 279 Laurent, T.C. Chen, Z. and Sadana, A. An early look at macromolecular crowding 7 An analysis of antigen—antibody binding kinetics for biosensor Lindner, R. and Ralston, G. applications utilized as a model system: influence of non- Effects of dextran on the self-association of human spectrin 15 specific binding 177 Mazerski, J. and Borowski, E. Dasgupta, D., see Sen, R. 269 Molecular dynamics of amphotericin B. II. Dimer in water 205 Dijk, J., see Wills, P.R. 37 Minton, A.P. Dwyer, J.D. and Bloomfield, V.A. A molecular model for the dependence of the osmotic pressure Brownian dynamics simulation of probe diffusion in DNA: of bovine serum albumin upon concentration and pH 65 effects of probe size, charge and DNA concentration 55 Minton, A.P. Macromolecular crowding: a foreword | Fine, R.M., see Schmidt, A.B. 219 Mishonova, E., see Ohshima, H. 189 Murphy, L.D. and Zimmerman, S.B. Georgalis, Y., see Wills, P.R. 37 Condensation and cohesion of A DNA in cell extracts and Gryczynski, I., Razynska, A. and Lakowicz, J.R. other media: Implications for the structure and function of Two-photon induced fluorescence of linear alkanes; a possible DNA in prokaryotes 71 intrinsic lipid probe 291 Nishio, T. Ha, V.H., see Papp, E. 155 Monte Carlo studies on potentiometric titration of (carboxy- Hall, D.R., Jacobsen, M.P. and Winzor, D.J. methyl)cellulose 261 Stabilizing effect of sucrose against irreversible denaturation of rabbit muscle lactate dehydrogenase 47 Herzfeld, J., see Kulp, D.T. 93 Ogston, A.G. Personal Recollections 3 lida, S. Ohshima, H., Mishonova, E. and Alexov, E. Interaction of calcium ions and polyelectrolytes 133 Electrostatic interaction between two charged spherical molecules 189 Jacobsen, M.P., see Hall, D.R. 47 Papp, E. and Ha, V.H. Korzeniewski, B. Local analysis of the M state kinetics of bacteriorhodopsin 155 Simulation of state 4— state 3 transition in isolated mito- Parsegian, V.A., see Podgornik, R. 111 chondria 143 Podgornik, R., Strey, H.H., Rau, D.C. and Parsegian, V.A. Kosevich, M.V., Shelkovsky, V.S. and Stepanian, S.G. Watching molecules crowd: DNA double helices under os- Dependence of the biological activity and mass spectrometric motic stress 111 pattern on the structure peculiarities of the molecule of alkylat- Poklar, N., Vesnaver, G. and Lapanje, S. ing drug thiotepa 123 Interactions of a-chymotrypsinogen A with alkylureas 279 298 Author Index to Volume 57 Ralston, G., see Lindner, R. 15 A comparison of the surface activity of the fungal hy- Rau, D.C., see Podgornik, R. 111 drophobin SC3p with those of other proteins 253 Razynska, A., see Gryczynski, I. 291 Vesnaver, G., see Poklar, N. 279 Vishveshwara, S., see Shobana, S. 163 Sadana, A., see Chen, Z. 177 Scalettar, B.A., see Abney, J.R. 27 Schmidt, A.B. and Fine, R.M. Size effects in nonpolar solvation: lessons from two simple Wahl, P. models 219 Fluorescence recovery after photobleaching of suspensions of Sen, R. and Dasgupta, D. vacuoles 225 Conformational changes of E. coli RNA polymerase during Wessels, J.G.H., see Van der Vegt, W. 253 transcription initiation 269 Wills, P.R., Georgalis, Y., Dijk, J. and Winzor, DJ. Shelkovsky, V.S., see Kosevich, M.V. 123 Measurement of thermodynamic nonideality arising from vol- Shobana, S. and Vishveshwara, S. ume-exclusion interactions between proteins and polymers 37 Conformational study of valinomycin: a molecular dynamics Wills, P.R., see Winzor, D.J. 103 approach 163 Winzor, D.J. and Wills, P.R. Stepanian, S.G., see Kosevich, M.V. 123 Thermodynamic nonideality of enzyme solutions supple- Strey, H.H., see Podgornik, R. 111 mented with inert solutes: yeast hexokinase revisited 103 Winzor, D.J., see Hall, D.R. 47 Thron, C.D. Winzor, D.J., see Wills, P.R. 37 A model for a bistable biochemical trigger of mitosis 239 Wosten, H.A.B., see Van der Vegt, W. 253 Van der Mei, H.C., see Van der Vegt, W. 253 Van der Vegt, W., Van der Mei, H.C., Wésten, H.A.B., Wessels, J.G.H. and Busscher, H.J. Zimmerman, S.B., see Murphy, L.D. 71 Biophysical Chemistry git BATS 45 LSEVIER Biophysical Chemistry 57 (1996) 299-303 Subject Index to Volume 57 Acrylamide quenching Calcium RNA polymerase; Fluorescence; TbGTP complex (Sen, R. 269) Poly(acrylic acid); Poly(methacrylic acid); Counterion condensation; Polyelectrolytes (lida, S. 133) Actin Statistical thermodynamics; Cytoskeleton; Bundles; Microtubules; Cdc2 Excluded volume; Flexibility (Kulp, D.T. 93) p13**'; Cdc25; Weel; Cyclin B; Maturation promoting factor; Cell cycle; Mathematical model (Thron, C.D. 239) Alanine-analog Valinomycin; Molecular dynamics; Conformation search Cdc25 (Shobana, S. 163) p13*"*'; Cde2; Weel; Cyclin B; Maturation promoting factor; Cell cycle; Mathematical model (Thron, C.D. 239) Alkylureas Urea; Solvation; Gibbs free energy (Poklar, N. 279) Cell cycle p13™*'; Cde2; Cde25; Weel; Cyclin B; Maturation promoting Amphotericin B factor; Mathematical model (Thron, C.D. 239) Molecular dynamics in water; Dimer structure; Antifungal antibiotic; Conformational flexibility (Mazerski, J. 205) Chemotherapeutic alkylating drug thiotepa MNDO quantum mechanical calculations; Hydration; Soft ioniza- Antifungal antibiotic tion mass spectrometry; Structure—activity links (Kosevich, M.V. Molecular dynamics in water; Dimer structure; Amphotericin B; 123) Conformational flexibility (Mazerski, J. 205) Computer simulation Antigen-antibody binding kinetics Oxidative phosphorylation; Dynamic model; Metabolic control Non-specific binding; Biosensor applications (Chen, Z. 177) analysis; Metabolic regulation (Korzeniewski, B. 143) Bacteriorhodopsin Conformational flexibility Photocycle; Sequential; Branching (Papp, E. 155) Molecular dynamics in water; Dimer structure; Antifungal antibiotic; Amphotericin B (Mazerski, J. 205) Biosensor applications Non-specific binding; Antigen—antibody binding kinetics (Chen, Conformation search Z. 177) Valinomycin; Alanine-analog; Molecular dynamics (Shobana, S. 163) Bovine serum albumin Osmotic pressure; Proteins (Minton, A.P. 65) Counterion condensation Poly(acrylic acid); Poly(methacrylic acid); Calcium; Polyelec- Branching trolytes (lida, S. 133) Bacteriorhodopsin; Photocycle; Sequential (Papp, E. 155) Brownian dynamics Crowding Probe diffusion; DNA; Polyelectrolytes; Macromolecular crowd- Excluded volume; Electrophoresis; Oligomers; Non-ideality (Lin- ing; Electrostatics; Hydrodynamics (Dwyer, J.D. 55) dner, R. 15) Bundles Cyclin B Statistical thermodynamics; Cytoskeleton; Actin; Microtubules; p13™*'; Cdc2; Cdc25; Weel; Maturation promoting factor; Cell Excluded volume; Flexibility (Kulp, D.T. 93) cycle; Mathematical model (Thron, C.D. 239) 300 Subject Index to Volume 57 Cylindrical cell system Molecular crowding; Protein—polymer interactions; Second virial Potentiometric titration; Monte Carlo simulation; Linear polyelec- coefficients; Thermodynamic nonideality (Wills, P.R. 37) trolyte; (Carboxymethyl)cellulose (CMC) (Nishio, T. 261) Lactate dehydrogenase; Molecular crowding; Protein stabilization; Cytoskeleton Thermodynamic nonideality (Hall, D.R. 47) Statistical thermodynamics; Bundles; Actin; Microtubules; Ex- cluded volume; Flexibility (Kulp, D.T. 93) Statistical thermodynamics; Cytoskeleton; Bundles; Actin; Micro- tubules; Flexibility (Kulp, D.T. 93) Diffusion Theory of FRAP; Vacuoles transport (Wahl, P. 225) Enzyme isomerization; Hexokinase; Molecular crowding; Ther- modynamic nonideality (Winzor, D.J. 103) Dimer structure Molecular dynamics in water; Antifungal antibiotic; Amphotericin Exclusion B; Conformational flexibility (Mazerski, J. 205) Polysaccharide; Macromolecular interaction; Semidilute systems; Sieve effects; Ordered convection (Laurent, T.C. 7) DNA Brownian dynamics; Probe diffusion; Polyelectrolytes; Macro- Flexibility molecular crowding; Electrostatics; Hydrodynamics (Dwyer, J.D. 55) Statistical thermodynamics; Cytoskeleton; Bundles; Actin; Micro- tubules; Excluded volume (Kulp, D.T. 93) Osmotic stress; Molecular crowding; X-ray scattering (Podgornik, Fluorescence R. 111) RNA polymerase; Acrylamide quenching; TbGTP complex (Sen, DNA-binding proteins R. 269) Nucleoid; Escherichia coli; Macromolecular crowding; Protein HU; Spermidine (Murphy, L.D. 71) Fluorescence correlation spectroscopy Electron microscopy; Monte Carlo simulations; Membrane do- Dynamic model mains; Membrane protein; Protein—protein interactions (Abney, Oxidative phosphorylation; Computer simulation; Metabolic con- J.R. 27) trol analysis; Metabolic regulation (Korzeniewski, B. 143) Gibbs free energy Electron microscopy Urea; Alkylureas; Solvation (Poklar, N. 279) Fluorescence correlation spectroscopy; Monte Carlo simulations; Membrane domains; Membrane protein; Protein—protein interac- Hexokinase tions (Abney, J.R. 27) Excluded volume; Enzyme isomerization; Molecular crowding; Thermodynamic nonideality (Winzor, D.J. 103) Electrophoresis Excluded volume; Crowding; Oligomers; Non-ideality (Lindner, Hydration R. 15) Chemotherapeutic alkylating drug thiotepa, MNDO quantum mechanical calculations; Soft ionization mass spectrometry; Struc- Electrostatic interaction ture—activity links (Kosevich, M.V. 123) Spherical molecules; Potential distribution (Ohshima, H. 189) Hydrodynamics Electrostatics Brownian dynamics; Probe diffusion; DNA; Polyelectrolytes; Brownian dynamics; Probe diffusion; DNA; Polyelectrolytes; Macromolecular crowding; Electrostatics (Dwyer, J.D. 55) Macromolecular crowding; Hydrodynamics (Dwyer, J.D. 55) Hydrophobin . Enzyme isomerization Interfacial tension; Protein adsorption; Schizophyllum commune; Excluded volume; Hexokinase; Molecular crowding; Thermody- Wettability (Van der Vegt, W. 253) namic nonideality (Winzor, D.J. 103) Escherichia coli Interfacial tension Nucleoid; Macromolecular crowding; Protein HU; DNA-binding Hydrophobin; Protein adsorption; Schizophyllum commune, Wet- proteins; Spermidine (Murphy, L.D. 71) tability (Van der Vegt, W. 253) Excluded volume Lactate dehydrogenase Electrophoresis; Crowding; Oligomers; Non-ideality (Lindner, R. Excluded volume; Molecular crowding; Protein stabilization; 15) Thermodynamic nonideality (Hall, D.R. 47) Subject Index to Volume 57 Lennard-Jones fluids Molecular crowding Solvation; Ornstein—Zernike equation (Schmidt, A.B. 219) Excluded volume; Protein—polymer interactions; Second virial coefficients; Thermodynamic nonideality (Wills, P.R. 37) Linear polyelectrolyte Potentiometric titration; Monte Carlo simulation; Cylindrical cell Excluded volume; Lactate dehydrogenase; Protein stabilization; system; (Carboxymethyl)cellulose (CMC) (Nishio, T. 261) Thermodynamic nonideality (Hall, D.R. 47) Lipid probe Excluded volume; Enzyme isomerization; Hexokinase; Thermody- namic nonideality (Winzor, D.J. 103) Two-photon excitation; Vacuum ultraviolet (Gryczynski, I. 291) DNA; Osmotic stress; X-ray scattering (Podgornik, R. 111) Macromolecular crowding Brownian dynamics; Probe diffusion; DNA; Polyelectrolytes; Electrostatics; Hydrodynamics (Dwyer, J.D. 55) Molecular dynamics Valinomycin; Alanine-analog; Conformation search (Shobana, S. 163) Nucleoid; Escherichia coli; Protein HU; DNA-binding proteins; Spermidine (Murphy, L.D. 71) Molecular dynamics in water Dimer structure; Antifungal antibiotic; Amphotericin B; Confor- Macromolecular interaction mational flexibility (Mazerski, J. 205) Polysaccharide; Semidilute systems; Sieve effects; Exclusion; Ordered convection (Laurent, T.C. 7) Monte Carlo simulation Potentiometric titration; Linear polyelectrolyte; Cylindrical cell Mathematical model system; (Carboxymethyl)cellulose (CMC) (Nishio, T. 261) p13™*'; Cde2; Cdce25; Weel; Cyclin B; Maturation promoting factor; Cell cycle (Thron, C.D. 239) Electron microscopy; Fluorescence correlation spectroscopy; Membrane domains; Membrane protein; Protein—protein interac- Maturation promoting factor tions (Abney, J.R. 27) p13™*'; Cdc2; Cdce25; Weel; Cyclin B; Cell cycle; Mathematical model (Thron, C.D. 239) Non-ideality Excluded volume; Electrophoresis; Crowding; Oligomers (Lind- Membrane domains ner, R. 15) Electron microscopy; Fluorescence correlation spectroscopy; Monte Carlo simulations; Membrane protein; Protein—protein in- Non-specific binding teractions (Abney, J.R. 27) Antigen—antibody binding kinetics; Biosensor applications (Chen, Z. 177) Membrane protein Electron microscopy; Fluorescence correlation spectroscopy; Nucleoid Monte Carlo simulations; Membrane domains; Protein—protein Escherichia coli; Macromolecular crowding; Protein HU; DNA- interactions (Abney, J.R. 27) binding proteins; Spermidine (Murphy, L.D. 71) Metabolic control analysis Oligomers Oxidative phosphorylation, Dynamic model; Computer simula- Excluded volume; Electrophoresis; Crowding; Non-ideality (Lind- tion; Metabolic regulation (Korzeniewski, B. 143) ner, R. 15) Metabolic regulation Ordered convection Oxidative phosphorylation; Dynamic model; Computer simula- Polysaccharide; Macromolecular interaction; Semidilute systems; tion; Metabolic control analysis (Korzeniewski, B. 143) Sieve effects; Exclusion (Laurent, T.C. 7) Microtubules Ornstein—Zernike equation Statistical thermodynamics; Cytoskeleton; Bundles; Actin; Ex- Solvation; Lennard—Jones fluids (Schmidt, A.B. 219) cluded volume; Flexibility (Kulp, D.T. 93) Osmotic pressure MNDO quantum mechanical calculations Bovine serum albumin; Proteins (Minton, A.P. 65) Chemotherapeutic alkylating drug thiotepa; Hydration; Soft ionization mass spectrometry; Structure—activity links (Kosevich, Osmotic stress M.V. 123) DNA; Molecular crowding; X-ray scattering (Podgornik, R. 111) 302 Subject Index to Volume 57 Oxidative phosphorylation Proteins Dynamic model; Computer simulation; Metabolic control analy- Bovine serum albumin; Osmotic pressure (Minton, A.P. 65) sis; Metabolic regulation (Korzeniewski, B. 143) Protein stabilization p13"! Excluded volume; Lactate dehydrogenase; Molecular crowding; Cdc2; Cdce25; Weel; Cyclin B; Maturation promoting factor; Cell Thermodynamic nonideality (Hall, D.R. 47) cycle; Mathematical model (Thron, C.D. 239) RNA polymerase Photocycle Fluorescence; Acrylamide quenching; TbGTP complex (Sen, R. Bacteriorhodopsin; Sequential; Branching (Papp, E. 155) 269) Poly(acrylic acid) Schizophyllum commune Poly(methacrylic acid); Calcium; Counterion condensation; Poly- Hydrophobin; Interfacial tension; Protein adsorption; Wettability electrolytes (lida, S. 133) (Van der Vegt, W. 253) Polyelectrolytes Second virial coefficients Brownian dynamics; Probe diffusion; DNA; Macromolecular Excluded volume; Molecular crowding; Protein—polymer interac- crowding; Electrostatics; Hydrodynamics (Dwyer, J.D. 55) tions; Thermodynamic nonideality (Wills, P.R. 37) Poly(acrylic acid); Poly(methacrylic acid); Calcium; Counterion Semidilute systems condensation (lida, S. 133) Polysaccharide; Macromolecular interaction; Sieve effects; Exclu- sion; Ordered convection (Laurent, T.C. 7) Poly(methacrylic acid) Poly(acrylic acid); Calcium; Counterion condensation; Polyelec- Sequential trolytes (lida, S$. 133) Bacteriorhodopsin; Photocycle; Branching (Papp, E. 155) Polysaccharide Sieve effects Macromolecular interaction; Semidilute systems; Sieve effects; Polysaccharide; Macromolecular interaction; Semidilute systems; Exclusion; Ordered convection (Laurent, T.C. 7) Exclusion; Ordered convection (Laurent, T.C. 7) Potential distribution Soft ionization mass spectrometry Electrostatic interaction; Spherical molecules (Ohshima, H. 189) Chemotherapeutic alkylating drug thiotepa; MNDO quantum mechanical calculations; Hydration; Structure—activity links (Kose- Potentiometric titration vich, M.V. 123) Monte Carlo simulation; Linear polyelectrolyte; Cylindrical cell system; (Carboxymethy])cellulose (CMC) (Nishio, T. 261) Solvation Lennard—Jones fluids; Ornstein—Zernike equation (Schmidt, A.B. Probe diffusion 219) Brownian dynamics; DNA; Polyelectrolytes; Macromolecular crowding; Electrostatics; Hydrodynamics (Dwyer, J.D. 55) Urea; Alkylureas; Gibbs free energy (Poklar, N. 279) Protein adsorption Spermidine Hydrophobin; Interfacial tension; Schizophyllum commune, Wet- Nucleoid; Escherichia coli; Macromolecular crowding; Protein tability (Van der Vegt, W. 253) HU; DNA-binding proteins (Murphy, L.D. 71) Protein HU Nucleoid; Escherichia coli; Macromolecular crowding; DNA- Spherical molecules binding proteins; Spermidine (Murphy, L.D. 71) Electrostatic interaction; Potential distribution (Ohshima, H. 189) Protein—polymer interactions Statistical thermodynamics Excluded volume; Molecular crowding; Second virial coefficients; Cytoskeleton; Bundles; Actin; Microtubules; Excluded volume; Thermodynamic nonideality (Wills, P.R. 37) Flexibility (Kulp, D.T. 93) Protein—protein interactions Structure-activity links Electron microscopy; Fluorescence correlation spectroscopy; Chemotherapeutic alkylating drug thiotepa, MNDO quantum me- Monte Carlo simulations; Membrane domains; Membrane protein chanical calculations; Hydration; Soft ionization mass spectrome- (Abney, J.R. 27) try (Kosevich, M.V. 123) Subject Index to Volume 57 TbGTP complex Vacuoles transport RNA polymerase; Fluorescence; Acrylamide quenching (Sen, R. Theory of FRAP; Diffusion (Wahl, P. 225) 269) Vacuum ultraviolet Theory of FRAP Lipid probe; Two-photon excitation (Gryczynski, I. 291) Vacuoles transport; Diffusion (Wahl, P. 225) Valinomycin Thermodynamic nonideality Alanine-analog; Molecular dynamics; Conformation search Excluded volume; Molecular crowding; Protein—polymer interac- (Shobana, S. 163) tions; Second virial coefficients (Wills, P.R. 37) Weel Excluded volume; Lactate dehydrogenase; Molecular crowding; p13**'; Cde2; Cde25; Cyclin B; Maturation promoting factor; Protein stabilization (Hall, D.R. 47) Cell cycle; Mathematical model (Thron, C.D. 239) Excluded volume; Enzyme isomerization; Hexokinase; Molecular Wettability crowding (Winzor, D.J. 103) Hydrophobin; Interfacial tension; Protein adsorption; Schizophyl- lum commune (Van der Vegt, W. 253) Two-photon excitation Lipid probe; Vacuum ultraviolet (Gryczynski, I. 291) X-ray scattering DNA; Osmotic stress; Molecular crowding (Podgornik, R. 111) Urea Alkylureas; Solvation; Gibbs free energy (Poklar, N. 279)