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Biophysical Chemistry 1994: Vol 51 Index PDF

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Preview Biophysical Chemistry 1994: Vol 51 Index

Biophysical Chemistry Biophysical Chemistry 51 (1994) 411-412 Author Index to Volume 51 (1994) Andzelm, J., see Rashin, A.A. (51) 375 Epstein, I.R., see Hocker, C.G. (51) 21 Ashbaugh, H.S., see Paulaitis, M.E. (51) 349 Azize, B., Cao, A., Perret, G. and Taillandier, E. Figueirido, F., Del Buono, G.S. and Levy, R.M. Thermal behavior and elastic properties of dimyristoyl Molecular mechanics and electrostatic effects (51) 235 phosphatidylcholine bilayers under the effect of pentoxi- Freire, E. and Xie, D. fylline (51) 45 Thermodynamic prediction of structural determinants of the molten globule state of barnase (51) 243 Barone, G., Della Gatta, G., Del Vecchio, P., Giancola, C. Fronticelli, C., Gattoni, M., Lu, A.-L., Brinigar, W.S., Bucci, and Graziano, G. J.L.G. and Chiancone, E. Hydration enthalpy of model peptides: N-acetyl amino The dimer-tetramer equilibrium of recombinant hemo- acid amides (51) 193 globins. Stabilization of the a,B, interface by the muta- Barwicz, J., see Chapados, C. (51) 71 tion B(Cys112 — Gly) at the a,B, interface (51) 53 Ben-Naim, A. Solvation of large molecules: Some exact results on the Gao, J. dependence on volume and surface area of the solute (51) The hydration and solvent polarization effects of nu- 203 cleotide bases (51) 253 Bonchev, D., Mountain, C.F. and Seitz, W.A. Garcia, A.E., see Pratt, L.R. (51) 147 The conformational flexibility of aromatic retinoids (51) 59 Garde, S., see Paulaitis, M.E. (51) 349 Breslauer, K.J., see Chalikian, T.V. (51) 89 Gattoni, M., see Fronticelli, C. (51) 53 Brinigar, W.S., see Fronticelli, C. (51) 53 Giancola, C., see Barone, G. (51) 193 Bucci, J.L.G., see Fronticelli, C. (51) 53 Gillet, C., see Voué, M. (51) 9 Bukatin, M.A., see Rashin, A.A. (51) 167 Graziano, G., see Barone, G. (51) 193 Bukatin, M.A., see Rashin, A.A. (51) 375 Gruda, I., see Chapados, C. (51) 71 Bystricky, S. and Szu, S.C. O-acetylation affects the binding properties of the carboxyl Hagler, A.T., see Rashin, A.A. (51) 375 groups on the Vi bacterial polysaccharide (51) 1 Hocker, C.G., Epstein, I.R., Kustin, K. and Tornheim, K. Glycolytic pH oscillations in a flow reactor (51) 21 Cachau, R.E. Hong, L., see Yonggia, Z. (51) 81 Molecular dynamics simulations of water using a floating Honig, B., see Sitkoff, D. (51) 397 polynomial force field and an interpolating electrostatic Hummer, G., see Pratt, L.R. (51) 147 field representation (51) 217 Cao, A., see Azize, B. (51) 45 Jiesheng, H., see Yonggia, Z. (51) 81 Chalikian, T.V., Sarvazyan, A.P. and Breslauer, K.J. Hydration and partial compressibility of biological com- Kustin, K., see Hocker, C.G. (51) 21 pounds (51) 89 Chapados, C., Barwicz, J. and Gruda, I. Lee, B. Separation of overlapping spectra from evolving systems Enthalpy—entropy compensation in the thermodynamics of using factor analysis: 2. Amphotericin B in aqueous hydrophobicity (51) 271 propanol and in aqueous lauroyl sucrose (51) 71 Lee, B. Chiancone, E., see Fronticelli, C. (51) 53 Relation between volume correction and the standard state (51) 263 Del Buono, G.S., see Figueirido, F. (51) 235 Lee, B., see Madan, B. (51) 279 Della Gatta, G., see Barone, G. (51) 193 Levy, R.M., see Figueirido, F. (51) 235 Del Vecchio, P., see Barone, G. (51) 193 Lu, A.-L., see Fronticelli, C. (51) 53 412 Author Index / Biophysical Chemistry 51 (1994) 411-412 Madan, B. and Lee, B. Rashin, A.A., Bukatin, M.A., Andzelm, J. and Hagler, A.T. Role of hydrogen bonds in hydrophobicity: the free energy Incorporation of reaction field effects into density func- of cavity formation in water models with and without the tional calculations for molecules of arbitrary shape in hydrogen bonds (51) 279 solution (51) 375 Makhatadze, G.I. and Privalov, P.L. Rashin, A.A., Young, L. and Topol, I.A. Hydration effects in protein unfolding (51) 291 Quantitative evaluation of hydration thermodynamics with Marcus, Y. a continuum model (51) 359 A simple empirical model describing the thermodynamics of hydration of ions of widely varying charges, sizes, and Sarvazyan, A.P., see Chalikian, T.V. (51) 89 shapes (51) 111 Schmidt, A.B. Mountain, C.F., see Bonchev, D. (51) 59 Excluded volume effect in solvation thermodynamics: sim- Murphy, K.P. ple Lennard-Jones model (51) 393 Hydration and convergence temperatures: on the use and Seitz, W.A., see Bonchev, D. (51) 59 interpretation of correlation plots (51) 311 Sharp, K.A., see Sitkoff, D. (51) 397 Sitkoff, D., Sharp, K.A. and Honig, B. Correlating solvation free energies and surface tensions of Nauchitel, V.V. and Somorjai, R.L. hydrocarbon solutes (51) 397 Antigen—antibody recognition. Model calculations (51) 337 Somorjai, R.L., see Nauchitel, V.V. (51) 327 Nauchitel, V.V. and Somorjai, R.L. Somorjai, R.L., see Nauchitel, V.V. (51) 337 Spatial and free energy distribution patterns of amino acid Szu, S.C., see Bystricky, S. (51) 1 residues in water soluble proteins (51) 327 Taillandier, E., see Azize, B. (51) 45 Panwen, S., see Yonggia, Z. (51) 81 Topol, 1.A., see Rashin, A.A. (51) 359 Paulaitis, M.E., Ashbaugh, H.S. and Garde, S. Tornheim, K., see Hocker, C.G. (51) 21 The entropy of hydration of simple hydrophobic solutes (51) 349 Voué, M. and Gillet, C. Perkyns, J. and Pettitt, B.M. Site-specific counterion binding: Application of the stan- Integral equation approaches to structure and thermody- dard Poisson—Boltzmann cell model to ionic polysaccha- namics of aqueous salt solutions (51) 129 rides of the plant cell wall (51) 9 Perret, G., see Azize, B. (51) 45 Pettitt, B.M., see Perkyns, J. (51) 129 Xie, D., see Freire, E. (51) 243 Porschke, D. Xuying, H., see Yonggia, Z. (51) 81 A resonance-like effect induced by sinusoidal electric fields in a macromolecular dipole (51) 37 Yonggia, Z., Yuwen, W., Xuying, H., Jiesheng, H., Yungqin, Pratt, L.R., Hummer, G. and Garcia, A.E. H., Hong, L. and Panwen, S. lon pair potentials-of-mean-force in water (51) 147 Equilibrium dialysis of metal-serum albumin: I. Successive Privalov, P.L., see Makhatadze, G.I. (51) 291 stability constants of Zn(I1)-serum albumin and the Zn?*- induced cross-linking self-association (51) 81 Rashin, A.A. and Bukatin, M.A. Young, L., see Rashin, A.A. (51) 359 A view of thermodynamics of hydration emerging from Yungin, H., see Yonggia, Z. (51) 81 continuum studies (51) 167 Yuwen, W., see Yonggia, Z. (51) 81 Biophysical Chemistry Biophysical Chemistry 51 (1994) 413-417 Subject Index to Volume 51 (1994) Absorption spectroscopy Binding free energy Factor analysis; Eigenspectra; Real spectra; Constraints; Am- N-acetylgalactosaminuronic acid; O-acetylation; Potentiomet- photericin B; Lauroyl sucrose; Aggregation; Monomer; ric titration; Circular dichroism (Bystricky, S. (51) 1) Oligomer (Chapados, C. (51) 71) Cavity free energy Accessibility Hydrophobicity; Water structure; Simulation (Madan, B. (51) Proteins; Residues; Hydrophobicity (Nauchitel, V.V. (51) 327) 279) Antigen; Antibody; Recognition; Proteins; Residues; Hydro- Charged, polar, and nonpolar atomic groups phobicity (Nauchitel, V.V. (51) 337) Partial compressibility; Hydration; Globular proteins; DNA duplexes (Chalikian, T.V. (51) 89) Aggregation Factor analysis; Eigenspectra; Real spectra; Constraints; Ab- Circular dichroism sorption spectroscopy; Amphotericin B; Lauroyl sucrose; N-acetylgalactosaminuronic acid; O-acetylation; Potentiomet- Monomer; Oligomer (Chapados, C. (51) 71) ric titration; Binding free energy (Bystricky, S. (51) 1) Alkali halide Compensation Ion pair potentials-of-mean force; Water (Pratt, L.R. (51) 147) Enthalpy; Entropy; Hydrophobic; Thermodynamic (Lee, B. (51) 271) Alkane Solvation free energy; Surface tension; Hydrocarbon (Sitkoff, Conformational analysis D. (51) 397) Arotinoids; Drug-receptor interaction; Geometry optimiza- tion; Rotational barriers (Bonchev, D. (51) 59) Amphotericin B Factor analysis; Eigenspectra; Real spectra; Constraints; Constraints Absorption spectroscopy; Lauroyl sucrose; Aggregation; Factor analysis; Eigenspectra; Real spectra; Absorption spec- Monomer; Oligomer (Chapados, C. (51) 71) troscopy; Amphotericin B; Lauroyl sucrose; Aggregation; Monomer; Oligomer (Chapados, C. (51) 71) Antibody Antigen; Recognition; Proteins; Residues; Accessibility; Hy- Continuum model drophobicity (Nauchitel, V.V. (51) 337) Hydration; Thermodynamics (Rashin, A.A. (51) 359) Antigen Antibody; Recognition; Proteins; Residues; Accessibility; Hy- Continuum studies drophobicity (Nauchitel, V.V. (51) 337) Thermodynamics; Hydration (Rashin, A.A. (51) 167) Aqueous salt solutions Convergence temperature Thermodynamics; DRISM theory (Perkyns, J. (51) 129) Hydration; Model peptide compounds; Protein stability (Barone, G. (51) 193) Arotinoids Conformational analysis; Drug—receptor interaction; Geome- Hydration; Entropy; Hydrogen bonding; Protein stability try optimization; Rotational barriers (Bonchev, D. (51) 59) (Murphy, K.P. (51) 311) 414 Subject Index / Biophysical Chemistry 51 (1994) 413-417 Counterion binding Equilibrium dialysis Plant cell wall; Polyelectrolyte; Poisson—Boltzmann cell model; Zn(II)-serum albumin; Successive stability constants; Zn?*- Polygalacturonic acid; Nitella flexilis (Voué, M. (51) 9) induced cross-linking self-association (Yongqia, Z. (51) 81) Density functional calculations Factor analysis Reaction field effects; Solvation effects (Rashin, A.A. (51) Eigenspectra; Real spectra; Constraints; Absorption spectros- 375) copy; Amphotericin B; Lauroyl sucrose; Aggregation; Monomer; Oligomer (Chapados, C. (51) 71) Differential gel filtration Recombinant hemoglobin; Subunit assembly (Fronticelli, C. Floating polynomial force field (S1) 53) Molecular dynamics; Water; Interpolating electrostatic field representation (Cachau, R.E. (51) 217) DNA double helix Frequency domain electrooptics; Permanent /induced dipole; Frequency domain electrooptics Phase dependence (Porschke, D. (51) 37) DNA double helix; Permanent /induced dipole; Phase depen- dence (Porschke, D. (51) 37) DNA duplexes Partial compressibility; Hydration; Charged, polar, and non- Geometry optimization polar atomic groups; Globular proteins (Chalikian, T.V. (51) Arotinoids; Conformational analysis; Drug—receptor interac- 89) tion; Rotational barriers (Bonchev, D. (51) 59) DRISM theory Gibbs and Helmholtz energies Thermodynamics; Aqueous salt solutions (Perkyns, J. (51) Solvation; Large molecules (Ben-Naim, A. (51) 203) 129) Globular proteins Drug-receptor interaction Partial compressibility; Hydration; Charged, polar, and non- Arotinoids; Conformational analysis; Geometry optimization; polar atomic groups; DNA duplexes (Chalikian, T.V. (51) 89) Rotational barriers (Bonchev, D. (51) 59) Glycolysis Eigenspectra Oscillations; Ultrafiltering continuous flow stirred tank reac- Factor analysis; Real spectra; Constraints; Absorption spec- tor (Hocker, C.G. (51) 21) troscopy; Amphotericin B; Lauroyl sucrose; Aggregation; Monomer; Oligomer (Chapados, C. (51) 71) Hydration Partial compressibility; Charged, polar, and nonpolar atomic Elasticity modulus groups; Globular proteins; DNA duplexes (Chalikian, T.V. Pentoxifylline; Model membranes; Quasi-elastic light scatter- (51) 89) ing (Azize, B. (51) 45) Thermodynamics; Continuum studies (Rashin, A.A. (51) 167) Electrostatics Molecular mechanics; Solvation; Linear response theory Model peptide compounds; Protein stability; Convergence (Figueirido, F. (S51) 235) temperature (Barone, G. (51) 193) Electrostriction Monte Carlo simulation; Polarization; Nucleotide bases (Gao, Model for ion hydration; Thermodynamic functions of hydra- J. (51) 253) tion; Water structure making, breaking (Marcus, Y. (51) 111) Interactions; Protein; Unfolding; Thermodynamics (Makha- Enthalpy tadze, G.I. (51) 291) Entropy; Compensation; Hydrophobic; Thermodynamic (Lee, B. (51) 271) Entropy; Hydrogen bonding; Protein stability; Convergence temperature (Murphy, K.P. (51) 311) Entropy Enthalpy; Compensation; Hydrophobic; Thermodynamic (Lee, B. (51) 271) Partial molar entropy; Solute—solvent correlation (Paulaitis, M.E. (51) 349) Hydration; Hydrogen bonding; Protein stability; Convergence temperature (Murphy, K.P. (51) 311) Continuum model; Thermodynamics (Rashin, A.A. (51) 359) Subject Index / Biophysical Chemistry 51 (1994) 413-417 Hydrocarbon Model peptide compounds Solvation free energy; Surface tension; Alkane (Sitkoff, D. Hydration; Protein stability; Convergence temperature (51) 397) (Barone, G. (51) 193) Hydrogen bonding Molecular dynamics Hydration; Entropy; Protein stability; Convergence tempera- Water; Floating polynomial force field; Interpolating electro- ture (Murphy, K.P. (51) 311) static field representation (Cachau, R.E. (51) 217) Hydrophobic Molecular mechanics Enthalpy; Entropy; Compensation; Thermodynamic (Lee, B. Electrostatics; Solvation; Linear response theory (Figueirido, (51) 271) F. (51) 235) Molten globule state Hydrophobicity Proteins; Structural determinants (Freire, E. (51) 243) Volume correction; Standard state (Lee, B. (51) 263) Water structure; Cavity free energy; Simulation (Madan, B. Monomer Factor analysis; Eigenspectra; Real spectra; Constraints; (51) 279) Absorption spectroscopy; Amphotericin B; Lauroyl sucrose; Aggregation; Oligomer (Chapados, C. (51) 71) Proteins; Residues; Accessibility (Nauchitel, V.V. (51) 327) Monte Carlo simulation Antigen; Antibody; Recognition; Proteins; Residues; Accessi- Hydration; Polarization; Nucleotide bases (Gao, J. (51) 253) bility (Nauchitel, V.V. (51) 337) N-acetylgalactosaminuronic acid Interactions O-acetylation; Potentiometric titration; Binding free energy; Hydration; Protein; Unfolding; Thermodynamics (Makha- Circular dichroism (Bystricky, S. (51) 1) tadze, G.I. (51) 291) Nitella flexilis Interpolating electrostatic field representation Plant cell wall; Polyelectrolyte; Poisson—Boltzmann cell model; Molecular dynamics; Water; Floating polynomial force field Counterion binding; Polygalacturonic acid (Voué, M. (51) 9) (Cachau, R.E. (51) 217) Nucleotide bases Ion pair potentials-of-mean force Monte Carlo simulation; Hydration; Polarization (Gao, J. (51) Alkali halide; Water (Pratt, L.R. (51) 147) 253) Large molecules O-acetylation Solvation; Gibbs and Helmholtz energies (Ben-Naim, A. (51) N-acetylgalactosaminuronic acid; Potentiometric titration; 203) Binding free energy; Circular dichroism (Bystricky, S. (51) 1) Lauroyl sucrose Oligomer Factor analysis; Eigenspectra; Real spectra; Constraints; Factor analysis; Eigenspectra; Real spectra; Constraints; Absorption spectroscopy; Amphotericin B; Aggregation; Absorption spectroscopy; Amphotericin B; Lauroyl sucrose; Monomer; Oligomer (Chapados, C. (51) 71) Aggregation; Monomer (Chapados, C. (51) 71) Lennard-Jones mixtures Ornstein-Zernike equation Thermodynamics; Ornstein—Zernike equation; Solute—solvent Thermodynamics; Lennard-Jones mixtures; Solute—solvent interactions (Schmidt, A.B. (51) 393) interactions (Schmidt, A.B. (51) 393) Linear response theory Oscillations Molecular mechanics; Electrostatics; Solvation (Figueirido, F. Glycolysis; Ultrafiltering continuous flow stirred tank reactor (51) 235) (Hocker, C.G. (51) 21) Model for ion hydration Partial compressibility Thermodynamic functions of hydration; Electrostriction; Hydration; Charged, polar, and nonpolar atomic groups; Water structure making, breaking (Marcus, Y. (51) 111) Globular proteins; DNA duplexes (Chalikian, T.V. (51) 89) Model membranes Partial molar entropy Pentoxifylline; Elasticity modulus; Quasi-elastic light scatter- Hydration; Solute—solvent correlation (Paulaitis, M.E. (51) ing (Azize, B. (51) 45) 349) 416 Subject Index / Biophysical Chemistry 51 (1994) 413-417 Pentoxifylline Hydration; Entropy; Hydrogen bonding; Convergence temper- Model membranes; Elasticity modulus; Quasi-elastic light ature (Murphy, K.P. (51) 311) scattering (Azize, B. (51) 45) Quasi-elastic light scattering Permanent / induced dipole Pentoxifylline; Model membranes; Elasticity modulus (Azize, DNA double helix; Frequency domain electrooptics; Phase B. (51) 45) dependence (Porschke, D. (51) 37) Reaction field effects Phase dependence Density functional calculations; Solvation effects (Rashin, A.A. DNA double helix; Frequency domain electrooptics; Perma- (51) 375) nent /induced dipole (Porschke, D. (51) 37) Real spectra Factor analysis; Eigenspectra; Constraints; Absorption spec- Plant cell wall troscopy; Amphotericin B; Lauroyl sucrose; Aggregation; Polyelectrolyte; Poisson—Boltzmann cell model; Counterion binding; Polygalacturonic acid; Nitella flexilis (Voué, M. (51) Monomer; Oligomer (Chapados, C. (51) 71) 9) Recognition Antigen; Antibody; Proteins; Residues; Accessibility; Hydro- Poisson—Boltzmann cell model phobicity (Nauchitel, V.V. (51) 337) Plant cell wall; Polyelectrolyte; Counterion binding; Poly- galacturonic acid; Nitella flexilis (Voué, M. (51) 9) Recombinant hemoglobin Subunit assembly; Differential gel filtration (Fronticelli, C. Polarization (51) 53) Monte Carlo simulation; Hydration; Nucleotide bases (Gao, J. (51) 253) Residues Proteins; Accessibility; Hydrophobicity (Nauchitel, V.V. (51) Polyelectrolyte 327) Plant cell wall; Poisson—Boltzmann cell model; Counterion binding; Polygalacturonic acid; Nitella flexilis (Voué, M. (51) Antigen; Antibody; Recognition; Proteins; Accessibility; 9) Hydrophobicity (Nauchitel, V.V. (51) 337) Polygalacturonic acid Rotational barriers Plant cell wall; Polyelectrolyte; Poisson—Boltzmann cell model; Arotinoids; Conformational analysis; Drug—receptor interac- Counterion binding; Nitella flexilis (Voué, M. (51) 9) tion; Geometry optimization (Bonchev, D. (51) 59) Potentiometric titration Simulation N-acetylgalactosaminuronic acid; O-acetylation; Binding free Hydrophobicity; Water structure; Cavity free energy (Madan, energy; Circular dichroism (Bystricky, S. (51) 1) B. (51) 279) Protein Solute-solvent correlation Hydration; Interactions; Unfolding; Thermodynamics Partial molar entropy; Hydration (Paulaitis, M.E. (51) 349) (Makhatadze, G.I. (51) 291) Solute-solvent interactions Proteins Thermodynamics; Ornstein—Zernike equation; Lennard-Jones Molten globule state; Structural determinants (Freire, E. (51) mixtures (Schmidt, A.B. (51) 393) 243) Solvation Residues; Accessibility; Hydrophobicity (Nauchitel, V.V. (51) Large molecules; Gibbs and Helmholtz energies (Ben-Naim, 327) A. (51) 203) Antigen; Antibody; Recognition; Residues; Accessibility; Molecular mechanics; Electrostatics; Linear response theory Hydrophobicity (Nauchitel, V.V. (51) 337) (Figueirido, F. (51) 235) Protein stability Solvation effects Hydration; Model peptide compounds; Convergence tempera- Reaction field effects; Density functional calculations (Rashin, ture (Barone, G. (51) 193) A.A. (51) 375) Subject Index / Biophysical Chemistry 51 (1994) 413-417 417 Solvation free energy Ornstein—Zernike equation; Lennard-Jones mixtures; Solute— Surface tension; Hydrocarbon; Alkane (Sitkoff, D. (51) 397) solvent interactions (Schmidt, A.B. (51) 393) Standard state Ultrafiltering continuous flow stirred tank reactor Volume correction; Hydrophobicity (Lee, B. (51) 263) Glycolysis; Oscillations (Hocker, C.G. (51) 21) Structural determinants Unfolding Molten globule state; Proteins (Freire, E. (51) 243) Hydration; Interactions; Protein; Thermodynamics (Makha- tadze, G.I. (51) 291) Subunit assembly Recombinant hemoglobin; Differential gel filtration (Fronti- Volume correction celli, C. (51) 53) Standard state; Hydrophobicity (Lee, B. (51) 263) Successive stability constants Water Zn(11)-serum albumin; Equilibrium dialysis; Zn**-induced Ion pair potentials-of-mean force; Alkali halide (Pratt, L.R. cross-linking self-association (Yonggia, Z. (51) 81) (51) 147) Surface tension Molecular dynamics; Floating polynomial force field; Interpo- Solvation free energy; Hydrocarbon; Alkane (Sitkoff, D. (51) lating electrostatic field representation (Cachau, R.E. (51) 397) 217) Thermodynamic Water structure Enthalpy; Entropy; Compensation; Hydrophobic (Lee, B. (51) Hydrophobicity; Cavity free energy; Simulation (Madan, B. 271) (51) 279) Thermodynamic functions of hydration Water structure making, breaking Model for ion hydration; Electrostriction; Water structure Model for ion hydration; Thermodynamic functions of hydra- making, breaking (Marcus, Y. (51) 111) tion; Electrostriction (Marcus, Y. (51) 111) Thermodynamics Zn(I})-serum albumin Aqueous salt solutions; DRISM theory (Perkyns, J. (51) 129) Equilibrium dialysis; Successive stability constants; Zn**- Hydration; Continuum studies (Rashin, A.A. (51) 167) induced cross-linking self-association (Yongqia, Z. (51) 81) Hydration; Interactions; Protein; Unfolding (Makhatadze, G.I. Zn? *-induced cross-linking self-association (51) 291) Zn(11)-serum albumin; Equilibrium dialysis; Successive stabil- ity constants (Yonggia, Z. (51) 81) Hydration; Continuum model (Rashin, A.A. (51) 359)

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