Bailey & Scott’s Diagnostic Microbiology

1193 Pages·2013·133.528 MB·English

by  Patricia Tille

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Simple Contents
I Basic Medical Microbiology, 1 SECTION 5 Non-Branching, Catalase-Negative,
PART
Gram-Positive Bacilli, 289
CHAPTER 1 Microbial Taxonomy, 1 CHAPTER 18 Erysipelothirix, Lactobacillus, and Similar
CHAPTER 2 Bacterial Genetics, Metabolism, and Structure, 4 Organisms, 289
CHAPTER 3 Host-Microorganism Interactions, 22 SECTION 6 Branching or Partially Acid-Fast,
Gram-Positive Bacilli, 296
PART II General Principles in Clinical CHAPTER 19 Nocardia, Streptomyces, Rhodococcus, and
Microbiology, 39 Similar Organisms, 296
SECTION 7 Gram-Negative Bacilli and
SECTION 1 Safety and Specimen Management, 39 Coccobacilli (MacConkey-Positive,
Oxidase-Negative), 307
CHAPTER 4 Laboratory Safety, 39
CHAPTER 20 Enterobacteriaceae, 307
CHAPTER 5 Specimen Management, 53
CHAPTER 21 Acinetobacter, Stenotrophomonas, and Similar
SECTION 2 Approaches to Diagnosis of Organisms, 329
Infectious Diseases, 68
SECTION 8 Gram-Negative Bacilli and
CHAPTER 6 Role of Microscopy, 68
Coccobacilli (MacConkey-Positive,
CHAPTER 7 Traditional Cultivation and Identification, 81 Oxidase-Positive), 335
CHAPTER 8 Nucleic Acid-Based Analytic Methods for CHAPTER 22 Pseudomonas, Burkholderia, and Similar
Microbial Identification and Characterization, 106
Organisms, 335
CHAPTER 9 Immunochemical Methods Used for Organism CHAPTER 23 Rhizobium, Ochrobactrum, and Similar
Detection, 133
Organisms, 348
CHAPTER 10 Serologic Diagnosis of Infectious Diseases, 142 CHAPTER 24 Chryseobacterium, Sphingobacterium, and
Similar Organisms, 354
SECTION 3 Evaluation of Antimicrobial Activity, 153
CHAPTER 25 Alcaligenes, Bordetella (Non-pertussis),
CHAPTER 11 Principles of Antimicrobial Action and
Comamonas, and Similar Organisms, 359
Resistance, 153
CHAPTER 26 Vibrio, Aeromonas, Chromobacterium, and
CHAPTER 12 Laboratory Methods and Strategies for
Related Organisms, 367
Antimicrobial Susceptibility Testing, 168
SECTION 9 Gram-Negative Bacilli and
III Bacteriology, 193 Coccobacilli (MacConkey-Negative,
PART
Oxidase-Positive), 376
CHAPTER 27 Sphingomonas paucimobilis and Similar
SECTION 1 Principles of Identification, 193
Organisms, 376
CHAPTER 13 Overview of Bacterial Identification Methods and
CHAPTER 28 Moraxella and Related Organisms, 383
Strategies, 193
CHAPTER 29 Eikenella and Similar Organisms, 387
SECTION 2 Catalase-Positive, Gram-Positive
CHAPTER 30 Pasteurella and Similar Organisms, 391
Cocci, 232
CHAPTER 31 Actinobacillus, Aggregatibacter, Kingella,
CHAPTER 14 Staphylococcus, Micrococcus, and Similar
Cardiobacterium, Capnocytophaga, and Similar
Organisms, 232
Organisms, 396
SECTION 3 Catalase-Negative, Gram-Positive
SECTION 10 Gram-Negative Bacilli and
Cocci, 247
Coccobacilli (MacConkey-Negative,
CHAPTER 15 Streptococcus, Enterococcus, and Similar Oxidase-Variable), 403
Organisms, 247
CHAPTER 32 Haemophilus, 403
SECTION 4 Non-Branching, Catalase-Positive,
SECTION 11 Gram-Negative Bacilli that Are
Gram-Positive Bacilli, 265
Optimally Recovered on Special
CHAPTER 16 Bacillus and Similar Organisms, 265 Media, 410
CHAPTER 17 Listeria, Corynebacterium, and Similar CHAPTER 33 Bartonella and Afipia, 410
Organisms, 273
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CHAPTER 34 Campylobacter, Arcobacter, and CHAPTER 60 Hyaline Molds, Mucorales (Zygomycetes),
Helicobacter, 415 Dermatophytes, and Opportunitistic and
CHAPTER 35 Legionella, 424 Systemic Mycoses, 732
CHAPTER 36 Brucella, 431 CHAPTER 61 Dematiaceious (Melanized) Molds, 759
CHAPTER 37 Bordetella pertussis, Bordetella parapertussis, CHAPTER 62 Opportunistic Atypical Fungus: Pneumocystis
jiroveci, 768
and Related Species, 436
CHAPTER 38 Francisella, 441 CHAPTER 63 The Yeasts, 771
CHAPTER 39 Streptobacillus moniliformis and Spirillum CHAPTER 64 Antifungal Susceptibility Testing, Therapy, and
Prevention, 783
minus, 446
SECTION 12 Gram-Negative Cocci, 449 VI Virology, 786
PART
CHAPTER 40 Neisseria and Moraxella catarrhalis, 449
SECTION 13 Anaerobic Bacteriology: Laboratory CHAPTER 65 Overview of the Methods and Strategies in
Considerations, 458 Virology, 786
CHAPTER 41 Overview and General Considerations, 458 CHAPTER 66 Viruses in Human Disease, 821
CHAPTER 42 Overview of Anaerobic Organisms, 473 CHAPTER 67 Antiviral Therapy, Susceptibility Testing, and
Prevention, 853
SECTION 14 Mycobacteria and Other Bacteria
with Unusual Growth
VII Diagnosis by Organ System, 860
PART
Requirements, 484
CHAPTER 43 Mycobacteria, 484 CHAPTER 68 Bloodstream Infections, 860
CHAPTER 44 Obligate Intracellular and Nonculturable Bacterial CHAPTER 69 Infections of the Lower Respiratory
Agents, 513
System, 878
CHAPTER 45 Cell Wall-Deficient Bacteria: Mycoplasma and CHAPTER 70 Upper Respiratory Tract Infections and Other
Ureaplasma, 527
Infections of the Oral Cavity and Neck, 892
CHAPTER 46 The Spirochetes, 535 CHAPTER 71 Meningitis, Encephalitis, and Other Infections of
the Central Nervous System, 899
IV Parasitology, 546
PART CHAPTER 72 Infections of the Eyes, Ears, and Sinuses, 910
CHAPTER 73 Infections of the Urinary Tract, 919
SECTION 1 Principles of Identification, 546
CHAPTER 74 Genital Tract Infections, 931
CHAPTER 47 Laboratory Methods for Diagnosis of Parasitic
CHAPTER 75 Gastrointestinal Tract Infections, 945
Infections: Overview, 546
CHAPTER 76 Skin, Soft Tissue, and Wound Infections, 961
CHAPTER 48 Intestinal Protozoa, 585
CHAPTER 77 Normally Sterile Body Fluids, Bone and Bone
CHAPTER 49 Blood and Tissue Protozoa, 624
Marrow, and Solid Tissues, 973
CHAPTER 50 Other Protozoa, 644
CHAPTER 51 Intestinal Nematodes (Roundworms), 656 VIII Clinical Laboratory
PART
CHAPTER 52 Tissue Nematodes (Roundworms), 666 Management, 982
CHAPTER 53 Blood and Tissue (Filarial) Nematodes, 672
CHAPTER 54 Intestinal Cestodes, 678 CHAPTER 78 Quality in the Clinical Microbiology
CHAPTER 55 Tissue Cestodes, 688 Laboratory, 982
CHAPTER 56 Intestinal Trematodes, 694 CHAPTER 79 Infection Control, 989
CHAPTER 57 Liver and Lung Trematodes, 697 CHAPTER 80 Sentinel Laboratory Response to
Bioterrorism, 997
CHAPTER 58 Blood Trematodes, 701
Glossary, 1003
V Mycology, 705
PART
CHAPTER 59 Overview of Fungal Identification Methods and
Strategies, 705
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Bailey & Scott’s
Diagnostic
Microbiology
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Bailey & Scott’s
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Microbiology
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T H I R T E E N T H 13 E D I T I O N
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Patricia M. Tille,
PhD, MLS(ASCP)
Program Director
Medical Laboratory Science
South Dakota State University
Brookings, South Dakota
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3251 Riverport Lane
St. Louis, Missouri 63043
BAILEY & SCOTT’S DIAGNOSTIC MICROBIOLOGY ISBN: 978-0-323-08330-0
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To my parents, whose memory continues to inspire me; to my
husband David, whose love has helped me through all of life’s ups
and downs; to our four children and their significant others,
Christina (Mike), Malissa (Kurt), DJ (Alyssa), and Katie (Milan,
Junior, and Julia), who are not only an inspiration and a joy, but
continue to support me in my professional career and in my
multiple roles as a mother, a mentor, and a friend. Not to forget my
grandson, Aedan, who loved to sit on my lap and look at the
pictures of my “bugs” every time I tried to work on this text. Lastly,
the two new additions to the family: Jayce and Maja. To my
mentors, who are too numerous to mention and have inspired me,
challenged me, and continued to support me during my journey to
continue to grow intellectually and professionally. Finally, to all my
colleagues and friends who have provided materials, contributions,
photos, and encouragement to complete this text. Without their
assistance and influence, this new edition would have been an
insurmountable undertaking.
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Reviewers
Hassan A. Aziz, PhD, MLS(ASCP) CM Rosemary Duda, MLS(ASCP), MS, SM, I
Director and Associate Professor of Biomedical Science MLS Program Director
Acting Coordinator of Graduate Program St. Margaret Hospital
College of Arts and Sciences Hammond, Indiana
Qatar University
Doha, Qatar Maribeth L. Flaws, PhD, SM(ASCP)SI
Associate Chairman and Associate Professor
Asmita Bhakta, CLS, MT(ASCP) Department of Medical Laboratory Science
Instructor of Clinical Microbiology Rush University Medical Center
Saddleback College Chicago, Illinois
Mission Viejo, California
Linda J. Graeter, PhD, MLS(ASCP)
Gloria Rudine Boyer, BS, MT(ASCP) Associate Professor
Emory University Hospital University of Cincinnati
Atlanta, Georgia Cincinnati, Ohio
Lynda Britton, PhD, MLS(ASCP) CM Theresa A. Greaves, MS, CLS, MT(ASCP)
Professor and Program Director Professor
LSU Health Sciences Center Ivy Tech Community College
Shreveport, Louisiana South Bend, Indiana
Stacie A. Brown, PhD Michele G. Harms, MS, MLS(ASCP)
Texas State University Program Director
San Marcos, Texas WCA Hospital School of Medical Technology
Jamestown, New York
Patricia Buchner, MS, CLS, ASCP
Stanford Hospital and Clinics Rita M. Heuertz, PhD, MT(ASCP)
Palo Alto, California Professor, Director of Departmental Research
DeAnza College Department of Clinical Laboratory Science
Cupertino, California Doisy College of Health Sciences
Saint Louis University
Louisiana A. Buckhanan BS, M(ASCP) St. Louis, Missouri
Medical Technologist
Lakeland Healthcare Alissa Lehto-Hoffman, MT(ASCP)
St. Joseph, Michigan Education and Training Coordinator
Charge Technologist
Joyce A. Bulgrin, MSA, MT(ASCP) South Bend Medical Foundation
Senior Lecturer Adjunct Professor
School of Health Care Professions Ivy Tech Community College
University of Wisconsin—Stevens Point South Bend, Indiana
Stevens Point, Wisconsin Adjunct Professor
Andrews University
Delfina C. Dominguez, PhD, MLS(ASCP) Berrien Springs, Michigan
Professor
The University of Texas at El Paso Jennifer A. Lichamer, MPH, CHES, IC, MT(ASCP)
El Paso, Texas Instructor
Northern Illinois University
Donna M. Duberg, MA, MS, MT(ASCP)SM DeKalb, Illinois
Assistant Professor
Clinical Laboratory Science Department Patty Liddell, MS, MT(ASCP)SH
Saint Louis University Supervisor, Science Laboratories
St. Louis, Missouri Baptist College of Health Science
Memphis, Tennessee
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REVIEWERS vii
Kathleen Micklow, BSMT, M(ASCP), CIC Wanda C. Reygaert, PhD
Infection Preventionist Associate Professor
Einstein Healthcare Network Department of Biomedical Sciences
Philadelphia, Pennsylvania William Beaumont School of Medicine
Oakland University
Paula C. Mister, MS, MT(ASCP), SM, ASCP CM Rochester, Michigan
Educational Coordinator, Clinical Microbiology
Johns Hopkins Hospital Lauren Roberts, MS, MT(ASCP)
Adjunct Faculty stevenson University Microbiology Laboratory
Community Colleges of Baltimore County St. Joseph’s Hospital and Medical Center
Baltimore, Maryland Phoenix, Arizona
Michelle Moy, MAdEd, MT(ASCP)SC John P Seabolt, EdD, MT(ASCP)SM
CLS Program Director Seaior Academic Coordinator
School of Continuing and Professional Studies Biology Department
Institutes for Allied Health University of Kentucky
Loyola University—Chicago Lexington, Kentucky
Chicago, Illinois
Cassandra Street, MT(ASCP), MMsc
Karen Peterson, MS, MT(ASCP) Emory University Hospital
Education Coordinator Atlanta, Georgia
University of North Dakota
Grand Forks, North Dakota Connie L. Wallace, BS, M(ASCP)
Microbiologist
Lynn Poth, MS, MT(ASCP) South Bend Medical Foundation
Faculty South Bend, Indiana
Saint Paul College
St. Paul, Minnesota James L. Vossler, MS, MLS(ASCP)SM CM
Assistant Professor
Jody L. Provencher, MS, MT(ASCP) SUNY Upstate Medical University
Medical Technologist Syracuse, New York
Albert Einstein Medical Center
Clinical Laboratory Instructor
Thomas Jefferson University
Philadelphia, Pennsylvania
Jessica L. Reinhardt, MT, CLS (M, NCA)
Microbiologist, Center for Aerobiological Sciences
U.S. Army Medical Research Institute of Infectious
Diseases
Frederick, Maryland
Adjunct Instructor in Pathology
School of Medicine and Health Sciences
The George Washington University
Washington, D.C.
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