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BACTERIAL DISEASES OF RICE AND THEIR MANAGEMENT BACTERIAL DISEASES OF RICE AND THEIR MANAGEMENT Edited by Deepti Srivastava, PhD Md. Shamim, PhD Malik Mobeen Ahmad, PhD K. N. Singh, PhD First edition published 2023 Apple Academic Press Inc. CRC Press 1265 Goldenrod Circle, NE, 6000 Broken Sound Parkway NW, Palm Bay, FL 32905 USA Suite 300, Boca Raton, FL 33487-2742 USA 760 Laurentian Drive, Unit 19, 4 Park Square, Milton Park, Burlington, ON L7N 0A4, CANADA Abingdon, Oxon, OX14 4RN UK © 2023 by Apple Academic Press, Inc. Apple Academic Press exclusively co-publishes with CRC Press, an imprint of Taylor & Francis Group, LLC Reasonable efforts have been made to publish reliable data and information, but the authors, editors, and publisher cannot assume responsibility for the validity of all materials or the consequences of their use. 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For works that are not available on CCC please contact [email protected] Trademark notice: Product or corporate names may be trademarks or registered trademarks and are used only for identification and explanation without intent to infringe. Library and Archives Canada Cataloguing in Publication Title: Bacterial diseases of rice and their management / edited by Deepti Srivastava, PhD, Md. Shamim, PhD, Malik Mobeen Ahmad, PhD, K.N. Singh, PhD Names: Srivastava, Deepti, editor. | Shamim, Md., 1985- editor. | Ahmad, Malik Mobeen, editor. | Singh, K. N. (Kapildeo Narayan), 1956- editor. Description: Includes bibliographical references and index. Identifiers: Canadiana (print) 20220479135 | Canadiana (ebook) 20220479216 | ISBN 9781774911914 (hardcover) | ISBN 9781774911945 (softcover) | ISBN 9781003331629 (ebook) Subjects: LCSH: Rice—Diseases and pests. | LCSH: Rice—Diseases and pests—Control. Classification: LCC SB608.R5 B33 2023 | DDC 633.1/893—dc23 Library of Congress Cataloging-in-Publication Data CIP data on file with US Library of C ongress ISBN: 978-1-77491-191-4 (hbk) ISBN: 978-1-77491-194-5 (pbk) ISBN: 978-1-00333-162-9 (ebk) About the Editors Deepti Srivastava, PhD Assistant Professor, Department of Agriculture, Integral University, Lucknow, India Deepti Srivastava, PhD, is currently working as an Assistant Professor in the Department of Agriculture at Integral University, Lucknow, India. She is the author and co-author of 18 peer-reviewed research articles and nine chapters in reputed national and international journals. She has one authored book to her credit. Dr. Srivastava completed her graduation at Dr. Ram Manohar Lohia Avadh University, Faizabad, India, and earned MSc (Ag Biotechnology) and PhD (Agricultural Biotechnology) degrees at Narendra Deva University of Agriculture and Technology, Kumarganj, Faizabad, India. During her MSc, she assessed the diversity of various bottle gourd germplasm with DNA (deoxynucleotide acid) fingerprinting and protein profiling. Her major research area involves plant biotechnology and molecular breeding in rice. She did gene pyramiding of submergence, blast resistant, and dwarfing genes in one of the finest rice var. Kalanamak. Dr. Srivastava received Young Scientist Awards from national and international conferences for her research work in the field of molecular breeding. Before joining Integral University, Dr. Srivastava worked at the CSIR- National Botanical Research Institute, Lucknow, where she was engaged in the DBT-funded project, which involved the development of hybrids of cotton by using a novel male sterility-fertility restorer system, and DNA fingerprinting of different bottle gourd germplasms. Her current research work includes the development of drought and heat-tolerant rice varieties. Md. Shamim, PhD Assistant Professor cum Jr. Scientist, Dr. Kalam Agricultural College, Kishanganj, (Bihar Agricultural University, Sabour, Bhagalpur), Bihar–855107, India Md. Shamim, PhD, is working as an Assistant Professor cum Jr. Scientist in the Department of Molecular vi About the Editors Biology and Genetic Engineering at Bihar Agricultural University, Sabour, India. He is the author or co-author of 25 peer-reviewed journal articles, as well as book chapters and conference papers. He has one authored book and one practical book to his credit. He is an editorial board member of several national and international journals. Recently, Dr. Shamim received the Young Scientist Award 2016 for his research work on biotechnology by the Bioved Research Institute of Agriculture, Technology, and Sciences, Allahabad, India. Dr. Shamim acquired a BSc (Biology) degree from Dr. Ram Manohar Lohia Avadh University, Faizabad, India, and MSc (Biotechnology) and PhD (Agricultural Biotechnology) degrees from Narendra Deva University of Agriculture and Technology, Kumarganj, Faizabad, India, with specialization in biotic stress management in rice through molecular and proteomics tools. Dr. Shamim was awarded a Maulana Azad National Fellowship Award from the University Grants Commission, New Delhi, India, during his PhD degree program. Before joining Bihar Agricultural University, Sabour, Dr. Shamim worked at the Indian Agricultural Research Institute, New Delhi, where he engaged in heat-responsive gene regulation in wheat. Dr. Shamim also has working experience at the Indian Institute of Pulses Research, Kanpur, India, on molecular and phylogeny analysis of several Fusarium fungi of pulses and also has done research at the Biochemistry Department of Dr. Ram Manohar Lohia Institute on plant protease inhibitor isolation and their characterization. He is a member of the soil microbiology core research group at Bihar Agricultural University (BAU), where he helps with providing appropriate direction and assisting in prioritizing the research work on polyglycerol polyricinoleates (PGPRs). He has proved himself as an active scientist in the area of biotic stress management in rice, especially in yellow stem borer management, by isolating protease inhibitors from jackfruit seeds and sheath blight resistance mechanisms in wild rice, cultivated rice, and other hosts. Malik Mobeen Ahmad, PhD Assistant Professor of Microbial Biotechnology, Department of Agriculture at Integral University, Lucknow, India Malik M. Ahmad, PhD, is an Assistant Professor of Microbial Biotechnology in the Department of Agri culture at Integral University, Lucknow, India, where he has been on the faculty since 2014. With his expertise in the area of microorganisms, he oversees the development of ready-to-use diagnostic About the Editors vii kits for mycotoxins or other toxins produced in food crops of importance to developing countries. Dr. Malik received the Young Scientist Award from the Society of Biological Sciences and Rural Development, which recognizes outstanding achievement in biological research leading to the advancement of biotech nology. In 2013, he was given an International Travel Grant by the Depart ment of Science and Technology, Government of India, for attending the 35th Mycotoxin Workshop at Ghent University, Belgium, a program which was aimed at training eminent microbial biotech scientists to be more efficient in performing science and to discuss ideas with scientists working in the respective area at the international scientific forum. He was also awarded senior and junior Research Fellowships in Science for Meritorious Students (RFSMS), funded by the University Grants Commission (UGC), Govern ment of India, to carry out his doctoral studies. He has published 21 scientific papers and five chapters in national and international journals of repute. His current research focuses on the bioprospecting of novel bioactive metabolites from endophytic fungi and their biotransformation. K. N. Singh, PhD Professor and Head, Department of Plant Molecular Biology and Genetic Engineering, Narendra Deva University of Agriculture and Technology, Kumaranj, Faizabad, India K. N. Singh, PhD, is working as a Professor and Head in the Department of Plant Molecular Biology and Genetic Engineering at Narendra Deva University of Agriculture and Technology, Kumaranj, Faizabad, India, and is the author or co-author of 50 peer-reviewed journal articles, 10 chapters, and four conference papers. He has one authored book and one practical book to his credit. He is an editorial board member of many journals. Professor K. N. Singh matriculated from Bihar School Examination Board with a national scholarship. He did his BSc (Hons.) and MSc at Science College, Patna, and then did his MPhil at Jawaharlal Nehru University, New Delhi, in life sciences. He did his PhD from Cambridge University (UK) in the Government of India overseas fellowship program. He then joined The Energy and Resources Institute, TERI, New Delhi, for a year before joining Tamil Nadu Agricultural University as Assistant Professor and then an Associate Professor in the Center for Plant Molecular Biology (CPMB). He joined Narendra Deva University of Agriculture and Technology as viii About the Editors Professor and has been heading the Biotechnology Department for the last 10 years. He was a visiting scientist under the Rockefeller Program at IRRI, Philippines. He is a fellow of the Indian Society of Agricultural Biochemists and a life member of many national and international societies. Dr. Singh has proved himself as an active scientist in the area of biotic stress management in rice, pigeon pea, and sesamum. Contents Contributors .............................................................................................................xi Abbreviations ........................................................................................................xvii Preface .................................................................................................................xxiii 1. Impact of Major Rice Bacterial Diseases on Agriculture and Food Security ...................................................................................................1 Deepak Kumar, Santosh K. Arya, Deepti Srivastava, Md. Shamim, L. J. Desai, and Manjusha Tyagi 2. Current and Potential Methods for Bacterial Disease Detection in Rice ...........................................................................................29 Karansher Sandhu, Balwinder Kaur, and Jagmohan Singh 3. An Overview of the Biology of Rice Bacterial Blight Pathogens and Prospects of Conventional Methods for Their Management ....................45 Mona F. A. Dawood, Yasser S. Moursi, Abdelrazek S. Abdelrhim, and Amany A. Hassan 4. Virulence Determinants and Host Defense Factors in Xanthomonas-Rice Interaction ....................................................................73 Shashi Pandey, Prashant Mishra, Taku Monya, and Rhitu Rai 5. Challenges and Opportunities of Recent Tools for Bacterial Blight Resistance ...........................................................................91 Anurag Mishra, Rajat Chaudhary, Vandana Sharma, and Prashant Yadav 6. Reviews of Biological and Ecological Studies of Bacterial Panicle Blight Pathogen .............................................................107 Faria Fatima and Arshya Hashim 7. Insights from the Conventional Breeding and Molecular Approaches for Rice Bacterial Panicle Blight Disease Resistance .........129 Rashmi Maurya, Munna Singh, Deepti Srivastava, and Shivi Rathor 8. Understanding the Biology of Rice Bacterial Brown Stripe Pathogen and Conventional Strategies for Its Management ..................143 Deepak Baboo, Mukul Kumar, A. K. Mishra, and Mohammed Said